mRNA_H-elongata_contig58447.13329.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58447.13329.1
Unique NamemRNA_H-elongata_contig58447.13329.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58447.13329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58447contigH-elongata_contig58447:411..2439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size768
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58447.13329.1prot_H-elongata_contig58447.13329.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58447 412..2439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.7710881-CDS-H-elongata_contig58447:411..5461622930947.7710881-CDS-H-elongata_contig58447:411..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 412..546 -
1691679636.3547618-CDS-H-elongata_contig58447:411..5461691679636.3547618-CDS-H-elongata_contig58447:411..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 412..546 -
1622930947.7918754-CDS-H-elongata_contig58447:835..8861622930947.7918754-CDS-H-elongata_contig58447:835..886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 836..886 -
1691679636.3669946-CDS-H-elongata_contig58447:835..8861691679636.3669946-CDS-H-elongata_contig58447:835..886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 836..886 -
1622930947.8176413-CDS-H-elongata_contig58447:1245..15601622930947.8176413-CDS-H-elongata_contig58447:1245..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 1246..1560 -
1691679636.3813927-CDS-H-elongata_contig58447:1245..15601691679636.3813927-CDS-H-elongata_contig58447:1245..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 1246..1560 -
1622930947.841846-CDS-H-elongata_contig58447:2018..20661622930947.841846-CDS-H-elongata_contig58447:2018..2066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 2019..2066 -
1691679636.3918452-CDS-H-elongata_contig58447:2018..20661691679636.3918452-CDS-H-elongata_contig58447:2018..2066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 2019..2066 -
1622930947.8707972-CDS-H-elongata_contig58447:2223..24391622930947.8707972-CDS-H-elongata_contig58447:2223..2439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 2224..2439 -
1691679636.4034517-CDS-H-elongata_contig58447:2223..24391691679636.4034517-CDS-H-elongata_contig58447:2223..2439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58447 2224..2439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58447.13329.1

>prot_H-elongata_contig58447.13329.1 ID=prot_H-elongata_contig58447.13329.1|Name=mRNA_H-elongata_contig58447.13329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
PTTVPPATTPTTVPVSQPSAPPVTPTTQTPAASPSTPPSDTLPTALPAAP
TTSTAPQIAPPSAPPASTPSVQPVVASSPPASTPAASEAPAVTAPIAPPT
QQPAAPVVPTIPPVTDPPVTTLPPVPTPPEPEPPTSPPLVAPTTPPEAPV
SAPVSPTQGPATPPTGTETPNTTPPVALSTVQPVEEISTSPALTPTAPTV
PPAIEASTQQPAAVPTSTTPPMGGPTSGTTPPVASPTAVTAPPDASPTTP
PATAS
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mRNA from alignment at H-elongata_contig58447:411..2439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58447.13329.1 ID=mRNA_H-elongata_contig58447.13329.1|Name=mRNA_H-elongata_contig58447.13329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2029bp|location=Sequence derived from alignment at H-elongata_contig58447:411..2439- (Himanthalia elongata Himel1 dioecious)
CCGACCACGGTGCCACCAGCGACGACACCTACGACGGTACCGGTGAGTCA
GCCTTCTGCACCGCCTGTGACCCCTACCACCCAGACGCCAGCTGCCTCAC
CTTCTACGCCGCCGTCAGATACTCTACCCACCGCATTACCGGCTGCGCCC
ACTACGTCGACGGCGCCACAGATTGCGCCGCCTTCAGCACCACCGGCATC
GACACCTTCGGTGCAGGTGAGCTGTCAGGTAGTCGCTTTTGTTTTGCGGC
TGCCTGTAGGTTTCTCTAAAAATGAAACCGGCGTGACTATCATTGCTTTA
AATTTATAATATTACGCTCTCTCTCTCCCTCTTCTCCCTTCCCGCTCGTC
TGATTTGTGCAAAATTGCCGCAGCCGGTAGTTGCGTCCTCACCGCCCGCT
TCTACGCCTGCCGCATCCGAGGTATGCATGCTTTGAATGACGCGTAGCAG
GTGTACTCGATAGCTTCCCGCCGTGCGAACAGAGGATAAGAATAGTCTGC
TTGTATCTACGTAGAACACACGTGTTGGACGAAGCGTGATGCGTAGCTTT
CTTATTTTACGAGCAGGGGGTCAAATAATCGTGGACTGATCGAAAGGTGA
GCATAAGTTGTGTGCCCAGCCCCCCCCTGGCTTTGGTAAGTGCGACGTTA
CTCCCCCGTTTCTTGTCCAGTCAGGAGCACAAAAATAACTGACGTAACAT
ACCGATGAGCGGGCGAGGCGTCCAGCTGTCCCATCTATTATTTTTCGCAA
TCTCTGCTGCTCCACCCCCCCCACACATACACACACACACACACTTCTCT
CCCTCCCCTTATCGATCCACTCTTGCGTTTTCTACGTGTTTGTGACATTG
TATCACTTGATCGCTCCGTTTTTTATCAGGCCCCGGCAGTGACCGCCCCG
ATTGCACCACCCACCCAGCAGCCAGCAGCACCGGTAGTCCCAACGATACC
GCCCGTCACCGACCCGCCGGTTACCACCCTTCCCCCGGTGCCTACGCCAC
CGGAGCCTGAACCACCGACGAGCCCGCCCCTAGTCGCTCCAACTACGCCG
CCGGAGGCTCCCGTCTCTGCCCCGGTTTCTCCGACCCAAGGACCCGCGAC
GCCTCCCACGGGCACGGAGACCCCGAACACGACCCCGCCCGTCGCTCTCT
CGACCGTCCAGCCTGTCGAGGAGATATCGACGTCGCCTGCATTGGTGCGT
ACGCCTGACGTTTCGTGGATGTTGTATTGTGTGTAGATATGTGTTTGTGT
GTGTCTTTTAAGCGTCAAGCTATCCGCGAAGCATGCGTTACTCAGCCGTT
CGTGGTTTTGGTATTTGCTTAGCGATGTCGAATCTTTCTTGCGTCGTTTT
AACTGGATATATACAGATCAGTGCAAGGTGACACGCCTGCATTATGCTCG
TCCTCTGTTCTAGGGTCCTCCTGTAGGATGATGTTGATTCAATTATCTAG
TGTAGCCGTGGGTAACCAGGTGGGTGAGAACCCCTGTTAATTTGTTCCCT
GATGTCAAAGCGACCTCGCCCTTTCCGTCCCTCGCCTTCCGTGTTACGTG
TAGACTCCGACGGCGCCAACTGTCCCGCCGGCTATCGAGGCCTCGACGCA
ACAGGTCCGTACATTCTCTCGGTTTCTCGTATTGTGGGTTGCGATATGAA
GCGTGTGCTAGATTTTCTTTTGGTTGCATATACAATAATAGAAGCAAGAT
AACGCGAGTTAAACGTCATAGTGCGCTTTCTTTTGGGCCCAGGAAAGCAA
CACCTCCCACCTCCTGTCGTTTTACGTATTTTAGCACATGTCAAATCCTC
CACAGTTTCTTACTCGCGCCCCTATATGTGACCCTCATCATCCACCCCCT
CAAAACTTTATCCTCCCCCAAACACCATGATGTCTAAACGCAGCCGGCGG
CCGTTCCGACCTCGACAACGCCACCGATGGGGGGCCCCACCAGCGGAACG
ACGCCCCCTGTTGCATCTCCAACAGCGGTTACGGCCCCACCCGATGCATC
CCCGACGACGCCACCGGCCACCGCGTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig58447:411..2439-

>mRNA_H-elongata_contig58447.13329.1 ID=mRNA_H-elongata_contig58447.13329.1|Name=mRNA_H-elongata_contig58447.13329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig58447:411..2439- (Himanthalia elongata Himel1 dioecious)
CCGACCACGGTGCCACCAGCGACGACACCTACGACGGTACCGGTGAGTCA
GCCTTCTGCACCGCCTGTGACCCCTACCACCCAGACGCCAGCTGCCTCAC
CTTCTACGCCGCCGTCAGATACTCTACCCACCGCATTACCGGCTGCGCCC
ACTACGTCGACGGCGCCACAGATTGCGCCGCCTTCAGCACCACCGGCATC
GACACCTTCGGTGCAGCCGACCACGGTGCCACCAGCGACGACACCTACGA
CGGTACCGGTGAGTCAGCCTTCTGCACCGCCTGTGACCCCTACCACCCAG
ACGCCAGCTGCCTCACCTTCTACGCCGCCGTCAGATACTCTACCCACCGC
ATTACCGGCTGCGCCCACTACGTCGACGGCGCCACAGATTGCGCCGCCTT
CAGCACCACCGGCATCGACACCTTCGGTGCAGCCGGTAGTTGCGTCCTCA
CCGCCCGCTTCTACGCCTGCCGCATCCGAGCCGGTAGTTGCGTCCTCACC
GCCCGCTTCTACGCCTGCCGCATCCGAGGCCCCGGCAGTGACCGCCCCGA
TTGCACCACCCACCCAGCAGCCAGCAGCACCGGTAGTCCCAACGATACCG
CCCGTCACCGACCCGCCGGTTACCACCCTTCCCCCGGTGCCTACGCCACC
GGAGCCTGAACCACCGACGAGCCCGCCCCTAGTCGCTCCAACTACGCCGC
CGGAGGCTCCCGTCTCTGCCCCGGTTTCTCCGACCCAAGGACCCGCGACG
CCTCCCACGGGCACGGAGACCCCGAACACGACCCCGCCCGTCGCTCTCTC
GACCGTCCAGCCTGTCGAGGAGATATCGACGTCGCCTGCATTGGCCCCGG
CAGTGACCGCCCCGATTGCACCACCCACCCAGCAGCCAGCAGCACCGGTA
GTCCCAACGATACCGCCCGTCACCGACCCGCCGGTTACCACCCTTCCCCC
GGTGCCTACGCCACCGGAGCCTGAACCACCGACGAGCCCGCCCCTAGTCG
CTCCAACTACGCCGCCGGAGGCTCCCGTCTCTGCCCCGGTTTCTCCGACC
CAAGGACCCGCGACGCCTCCCACGGGCACGGAGACCCCGAACACGACCCC
GCCCGTCGCTCTCTCGACCGTCCAGCCTGTCGAGGAGATATCGACGTCGC
CTGCATTGACTCCGACGGCGCCAACTGTCCCGCCGGCTATCGAGGCCTCG
ACGCAACAGACTCCGACGGCGCCAACTGTCCCGCCGGCTATCGAGGCCTC
GACGCAACAGCCGGCGGCCGTTCCGACCTCGACAACGCCACCGATGGGGG
GCCCCACCAGCGGAACGACGCCCCCTGTTGCATCTCCAACAGCGGTTACG
GCCCCACCCGATGCATCCCCGACGACGCCACCGGCCACCGCGTCGCCGGC
GGCCGTTCCGACCTCGACAACGCCACCGATGGGGGGCCCCACCAGCGGAA
CGACGCCCCCTGTTGCATCTCCAACAGCGGTTACGGCCCCACCCGATGCA
TCCCCGACGACGCCACCGGCCACCGCGTCG
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