mRNA_H-elongata_contig58374.13322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58374.13322.1
Unique NamemRNA_H-elongata_contig58374.13322.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58374.13322.1 vs. uniprot
Match: D8LKL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL3_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 4.870e-98
Identity = 161/224 (71.88%), Postives = 177/224 (79.02%), Query Frame = 1 
Query:    1 KTWGPEAFARRTRTKIHNFGAPLPPWEDKRVRPTPQARGIPKSINVILLGPTGSGKSSLIYTWWRALSGSVTGKEEFFAENVHNSFLERLRVGWNAEREEDARRRIQPSAS------ALAAGESS-APVTASAGVSSTGGVPESDGGGSVRVGEALMRAAPRHGTSGLDAFQLQAPNPHRGSAGITVHDTKGQQFFTEDEERFAEKMLEGKVKEGGAVDKQNYK 651
            +TWGPEAFARRTRTKIHN GAPLPPWE K  RPTP ARGIPKSIN+ILLGPTGSGKSSL+YTWWRALSGSVTGKEEF AE+VH+SFL+RLRVGWNA+  E+AR+R Q          ALA G SS AP TA              GGG      AL++AAPRHGT GLDAFQLQAP+PHRG  GITVHDTKGQQFFTE+EERFAE+ML+GKV+EG AVDKQNYK
Sbjct:   24 ETWGPEAFARRTRTKIHNLGAPLPPWESKEQRPTPAARGIPKSINIILLGPTGSGKSSLVYTWWRALSGSVTGKEEFLAEHVHDSFLQRLRVGWNAKEGEEARQRAQXXXXXXXXXPALATGASSVAPPTA-------------PGGG------ALLKAAPRHGTKGLDAFQLQAPDPHRGCTGITVHDTKGQQFFTEEEERFAEQMLQGKVEEGSAVDKQNYK 228
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BLAST of mRNA_H-elongata_contig58374.13322.1 vs. uniprot
Match: A0A7R9U7I7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7I7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.300e-36
Identity = 87/219 (39.73%), Postives = 116/219 (52.97%), Query Frame = 1 
Query:    1 KTWGPEAFARRTRTKIHNFGAPLPPWEDKRVRPTPQARGIPKSINVILLGPTGSGKSSLIYTWWRALSGSVTGKEE--FFAENVHNSFLERLRVGWNAEREEDARRRIQPSASALAAGESSAPVTASAGVSSTGGVPESDGGGSVRVGEALMRAAPRHGTSGLDAFQLQAPNPHRGSAGITVHDTKGQQFFTEDEERFAEKMLEGKVKEGGAVDKQNYK 651
            + WGPEAFA+R R ++ +    LPP  ++       +  +P+  NV+LLGPTG+GKSSL+YTWWRAL+G+   ++   F     H+S L RL++GW AE  EDA R  Q                                          + AAPRHGT+ L AF+LQA +   G   I +HDTKGQQFFTE+EE FA  MLEGKV  G   D  +++
Sbjct:   19 EAWGPEAFAKRLRARLKSAQVQLPPELERS-----DSSELPRGFNVLLLGPTGAGKSSLVYTWWRALAGTQAREDRASFLKNFAHHSLLRRLQLGWTAE-SEDAGRSDQ------------------------------------------LSAAPRHGTTALTAFELQAASDACGH--IQIHDTKGQQFFTEEEESFANDMLEGKVLPGSTPDAVHWR 187
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BLAST of mRNA_H-elongata_contig58374.13322.1 vs. uniprot
Match: A0A6H5K4Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.640e-29
Identity = 59/90 (65.56%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:  442 ALMRAAPRHGTSGLDAFQLQAPNPHRGSAGITVHDTKGQQFFTEDEER--------------------FAEKMLEGKVKEGGAVDKQNYK 651
            AL++AAPRHGT GLDAFQLQAP+PHRG  GITVHDTKGQQFFTE+EER                    FAE+ML+GKV+EG AVDKQNYK
Sbjct:    6 ALLKAAPRHGTKGLDAFQLQAPDPHRGCTGITVHDTKGQQFFTEEEERCGATALFGGMVGKVGMLHNGFAEQMLQGKVEEGSAVDKQNYK 95
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BLAST of mRNA_H-elongata_contig58374.13322.1 vs. uniprot
Match: A0A835Z504_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z504_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.160e-14
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:  433 VGEALMRAAPRHGTSGLDAFQLQAPNPHRGSAGITVHDTKGQQFFTEDEERFAEKMLEGKVKEGGAVDKQNYK 651
            V  +++ AA RHGT+ L+AF+L+   P  G AGI VHDTKGQQFFT +EERFAE +LEGK+  G   + +NY+
Sbjct:  324 VPPSVLEAAARHGTTRLEAFELRPAGPS-GVAGIAVHDTKGQQFFTHEEERFAEHLLEGKLLPGSTAESRNYR 395
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BLAST of mRNA_H-elongata_contig58374.13322.1 vs. uniprot
Match: A0A7S2STS1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STS1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 8.980e-12
Identity = 79/232 (34.05%), Postives = 106/232 (45.69%), Query Frame = 1 
Query:    1 KTWGPEAFARRTRTKIHNF----GAPLPPWEDKRVRPTPQARGIPKSINVILLGPTGSGKSSLIYTWWRAL----SGSVTGKEEFFAENVHNSFLERLRVGWNAEREEDARRRIQPSASALAAGESSAPVTASAGVSSTGGVPESDGGGSVRVGEALMRAAP-------RHGTSGLDAFQLQAPNPHRGSAGITVHDTKGQQFFTEDEERFAEKMLEGKVKEGGAVDKQNYK 651
            + WG  AFAR  R ++       G  LP     R+   P+        N+++LGP GSGKSSLIYT WRAL    SG+ T  E    ++   S       G  ++  ED+   +  SA   A G SS         S    +P  D    + V  +L   AP       RHGT GL    +  P+     AGI+VHDTKGQQFF + E R A  +L G   EG   +++N +
Sbjct:   51 EVWGAPAFARAIRGRLVARQLCDGEGLPQGTSTRLPSPPR-------WNLLVLGPAGSGKSSLIYTLWRALHHHESGTRTQSEALGGQDPEAS------TGGESQSPEDSSPCLG-SAHQPADGPSS---------SVADDLPAED---KMAVELSLGWEAPTGTSLRARHGTKGLRVVDILEPDGCH--AGISVHDTKGQQFFDDAEGRHAGHLLHGTALEGSNQEQENLR 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58374.13322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LKL3_ECTSI4.870e-9871.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U7I7_9STRA1.300e-3639.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5K4Q7_9PHAE1.640e-2965.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z504_9STRA3.160e-1454.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2STS1_9STRA8.980e-1234.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58374contigH-elongata_contig58374:491..3533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-16_003400.1
Exons4
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58374.13322.1prot_H-elongata_contig58374.13322.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58374 491..3533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.5815527-CDS-H-elongata_contig58374:490..6471622930946.5815527-CDS-H-elongata_contig58374:490..647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 491..647 +
1691679635.8687427-CDS-H-elongata_contig58374:490..6471691679635.8687427-CDS-H-elongata_contig58374:490..647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 491..647 +
1622930946.6015697-CDS-H-elongata_contig58374:2019..21141622930946.6015697-CDS-H-elongata_contig58374:2019..2114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 2020..2114 +
1691679635.879003-CDS-H-elongata_contig58374:2019..21141691679635.879003-CDS-H-elongata_contig58374:2019..2114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 2020..2114 +
1622930946.624825-CDS-H-elongata_contig58374:2618..29501622930946.624825-CDS-H-elongata_contig58374:2618..2950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 2619..2950 +
1691679635.8908703-CDS-H-elongata_contig58374:2618..29501691679635.8908703-CDS-H-elongata_contig58374:2618..2950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 2619..2950 +
1622930946.6479034-CDS-H-elongata_contig58374:3463..35331622930946.6479034-CDS-H-elongata_contig58374:3463..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 3464..3533 +
1691679635.9014359-CDS-H-elongata_contig58374:3463..35331691679635.9014359-CDS-H-elongata_contig58374:3463..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58374 3464..3533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58374.13322.1

>prot_H-elongata_contig58374.13322.1 ID=prot_H-elongata_contig58374.13322.1|Name=mRNA_H-elongata_contig58374.13322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
KTWGPEAFARRTRTKIHNFGAPLPPWEDKRVRPTPQARGIPKSINVILLG
PTGSGKSSLIYTWWRALSGSVTGKEEFFAENVHNSFLERLRVGWNAEREE
DARRRIQPSASALAAGESSAPVTASAGVSSTGGVPESDGGGSVRVGEALM
RAAPRHGTSGLDAFQLQAPNPHRGSAGITVHDTKGQQFFTEDEERFAEKM
LEGKVKEGGAVDKQNYK*
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mRNA from alignment at H-elongata_contig58374:491..3533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58374.13322.1 ID=mRNA_H-elongata_contig58374.13322.1|Name=mRNA_H-elongata_contig58374.13322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3043bp|location=Sequence derived from alignment at H-elongata_contig58374:491..3533+ (Himanthalia elongata Himel1 dioecious)
AAGACATGGGGACCGGAGGCCTTCGCGCGCCGCACACGAACCAAGATTCA
CAACTTCGGAGCACCGCTCCCGCCCTGGGAGGACAAGAGAGTCCGTCCGA
CCCCTCAGGCTAGGGGAATTCCCAAGTCTATCAATGTCATCTTGTTGGGA
CCCACAGGTGCGTGGATGATAAATCACTCACCAAATCAATCACCAAATCA
ATCACCCCGCGTAATGCCGAATTTTACCTACCGGTAGGCAGTAGTGCAGT
ATGGAGGAGTGGTGCGATGATCGGGAAAGAGGTAAAAATCGAAAAATCCT
ACAGGAAAAAAAAAGGCCTGGGGGGGACTAGAGTTTTTTTGTACATATTG
TGGCCCGACTGCGCTCTCTTGGTTGACGCCGTTGCTTTGGCTGACCAGGT
TTATTTTAGGGATGGATAGTTCGTCATATTATGGCGTCCCCATATGAAGA
AGAATCACATACTTGTATGATGATTTTGTGCCTAGATGTAGTTAAAATGT
CCACGTTCGAACATGACGATAGTTGGTCCCCTGGACTACACCTCTCATGG
TGCTAAGAAGGCGTGGATGTTCGAAAGGTTCGAATGAGTTCATTTGTTTT
TTAATAATAATCTGACTATATTGCAACAGCGGTCTTGAGGGGTGGGGGGT
ATCGGTGATCAAGCGTGACCCTAGGAGAGCAACGGCGGAAGACTTTTCTT
AAGATGCAGAAAGGTAGAGAACGGAGAGGTGTGGGGTCGTGGTTGGTGCA
TGGGAAGTCGAGCGGCGTGTCGTAGAACGTGTTTAGAGATATCCCGGGAT
GGAAATTTGCCAGTACCCCCCCCCCCCCTAAATTGGTATCTATATCAGAG
CCGGGGGGCAATTAGACGATAGCTATTATTAAGAAACAGTATCACGTCCT
TGAGAATATTTTGATATATTTCTAGCTCCCCACTGTTTGCTCGGTGGTGG
TGTCGGGGAGGGATACGCATGCTCCGTTTCCCCGTGTTTCTCCTAGGCTT
TGGCACATTCGTCACCGAAAGGGCAGCGGTCAAGCTTATCACTCGAGTAT
AAAAATGACTGCAGCCGGTAGCGCTTCGTACAGGAATACAACACAGGAAG
ACTGAGCACCATGTTGTGATGGAATGGTAGATGGGCGTATCCCATAAGGA
ACTTTTCACACACACACACACACACACAATCGCCTTCGCGAGGGTGAGAA
AGGTTATGTCACAGCGAACCACGAACGGTACCCTCCCGCGACGACGCCGC
CTCGAGTCACTTGCCCCTCGCATTGAGAAGCATGCCTGAAAATGTTTAGG
AACTCCCGCGCTCATTTCATCGTCCAAAAGTTTTTTGTTTTTTTTTCTTT
CCTTGCTTCCTAGCTCTACGAAGCAGCTCGCACGTTTCTTCGCGCGCACG
ATAGTAGCAGAAAGTTCACCTTATTTTATTTGCGATGACGGGAGCGGGGT
CTGCCGGCTGTGTGTGATGCTTTTGCTCATTTCCTGTGTAATTTTTTTTT
ATATGAAAAATGAAAAACATACAAATCAGGATCTGGCAAGTCTTCTCTGA
TCTACACCTGGTGGAGAGCGCTCAGCGGAAGCGTCACTGGCAAGGAGGAG
TTCTTCGCGGAGAACGTTCACAACGTGCGTTGTGCTCGGCTACGTACGCA
CACGAGGTCGAAAATAAGTAAAGAAGAAAAAAATAAGCAGAAACCCGGAG
AGTAGAAACCCCGAAAGCCCAAGGCAACGCGTATTGATTAGTCGCTTTGT
CATAGACGAGGGAAAATGGAGGTTGTGGGGATGGTCCAAATTGGTCCAAA
TTGGCGCCCGATGCCGCAAAGGACGAAAGCTTTAGCGTGGTCGTGGTTTC
CTTCTCAAGGGTCCTGAGATTCAGAGTTGTCGGCTCCGTGCAATCATATG
CTTCGAACCATTTTCTTCAGTAGTAGCTGGCACACTGAGTGCTCCAACAT
CACCCTTCAGAAAAAAGTCAGAGTAAATGCGTAAAAGTTACTTCTATCTA
TTGTTTGATTATGTGTTAAACCTGTATAAATCCACCCTTGTGGTGGGTGT
CTATTTGTATTTATGTTCTCGCGTCCCCCGTCCTTTCCCCCCTCCCCTTG
ATCGCTTTCTCCCCCCCCAAACAAAAAGTCGTTCCTGGAGCGATTGCGAG
TCGGGTGGAACGCTGAGCGAGAGGAAGATGCTCGTCGGCGAATACAGCCG
TCGGCGTCAGCCCTTGCCGCGGGCGAGAGCTCGGCGCCAGTCACGGCATC
AGCAGGCGTTTCTTCGACGGGGGGGGTCCCGGAGTCGGATGGGGGGGGTA
GCGTCAGAGTGGGAGAAGCCCTGATGAGAGCCGCGCCGAGGCATGGCACG
TCGGGGCTCGATGCGTTCCAGCTGCAAGCCCCGAATCCTCATAGGGGGTC
GGCCGGGATCACGGTGCACGACACCAAGGGGCAGCAGTTTTTCACCGAGG
ATGAGGAGAGGTGACGCCTTGAGGAGAATTTTAGGGGGGAGAGGGCAGAG
TCGGAAGACTTGTGTTACGCACTCGTGTCTGGCTCGCCGGAGTGTGTTTG
GGGGTGGGGGGAGTGTCTTTCGCGTCCTGACCCCGCTCGTGTTCCCTGGC
GGAACCTCGGGGTTTTGTGATGACAATGACATTAATGAACTCCACCTGGA
AGTGTGCGCCGAATGCGTCAGCTCTAGATTGGCTTAGCTAGCTGGTTACG
CCACTTCGCTGATAGGATTATTTTTTACCTCGGATCCATCTGCGACACGG
CCTCGTTCTTCGTCTCCCCACACACACATGCACACGATATTCTGCACGCA
CTTTTTGGTGCCTAAGTACGCGCCTTCTCTGTACAGTATCCGAAAATTCC
GTGTTTTTTTTTTTTTTTTTTACAACGCTGCAGGTAGTGCAAAGAGTAAA
ATTGAATCGTTTGTTTTTCTCGGGTGGCGTGGGGGCGGGGGCGTGATTGG
GTGGGGATGTTGGTGTTACGCAGATTCGCGGAGAAGATGCTGGAGGGCAA
GGTGAAGGAGGGCGGCGCGGTGGACAAGCAAAACTACAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig58374:491..3533+

>mRNA_H-elongata_contig58374.13322.1 ID=mRNA_H-elongata_contig58374.13322.1|Name=mRNA_H-elongata_contig58374.13322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig58374:491..3533+ (Himanthalia elongata Himel1 dioecious)
AAGACATGGGGACCGGAGGCCTTCGCGCGCCGCACACGAACCAAGATTCA
CAACTTCGGAGCACCGCTCCCGCCCTGGGAGGACAAGAGAGTCCGTCCGA
CCCCTCAGGCTAGGGGAATTCCCAAGTCTATCAATGTCATCTTGTTGGGA
CCCACAGAAGACATGGGGACCGGAGGCCTTCGCGCGCCGCACACGAACCA
AGATTCACAACTTCGGAGCACCGCTCCCGCCCTGGGAGGACAAGAGAGTC
CGTCCGACCCCTCAGGCTAGGGGAATTCCCAAGTCTATCAATGTCATCTT
GTTGGGACCCACAGGATCTGGCAAGTCTTCTCTGATCTACACCTGGTGGA
GAGCGCTCAGCGGAAGCGTCACTGGCAAGGAGGAGTTCTTCGCGGAGAAC
GTTCACAACGATCTGGCAAGTCTTCTCTGATCTACACCTGGTGGAGAGCG
CTCAGCGGAAGCGTCACTGGCAAGGAGGAGTTCTTCGCGGAGAACGTTCA
CAACTCGTTCCTGGAGCGATTGCGAGTCGGGTGGAACGCTGAGCGAGAGG
AAGATGCTCGTCGGCGAATACAGCCGTCGGCGTCAGCCCTTGCCGCGGGC
GAGAGCTCGGCGCCAGTCACGGCATCAGCAGGCGTTTCTTCGACGGGGGG
GGTCCCGGAGTCGGATGGGGGGGGTAGCGTCAGAGTGGGAGAAGCCCTGA
TGAGAGCCGCGCCGAGGCATGGCACGTCGGGGCTCGATGCGTTCCAGCTG
CAAGCCCCGAATCCTCATAGGGGGTCGGCCGGGATCACGGTGCACGACAC
CAAGGGGCAGCAGTTTTTCACCGAGGATGAGGAGAGTCGTTCCTGGAGCG
ATTGCGAGTCGGGTGGAACGCTGAGCGAGAGGAAGATGCTCGTCGGCGAA
TACAGCCGTCGGCGTCAGCCCTTGCCGCGGGCGAGAGCTCGGCGCCAGTC
ACGGCATCAGCAGGCGTTTCTTCGACGGGGGGGGTCCCGGAGTCGGATGG
GGGGGGTAGCGTCAGAGTGGGAGAAGCCCTGATGAGAGCCGCGCCGAGGC
ATGGCACGTCGGGGCTCGATGCGTTCCAGCTGCAAGCCCCGAATCCTCAT
AGGGGGTCGGCCGGGATCACGGTGCACGACACCAAGGGGCAGCAGTTTTT
CACCGAGGATGAGGAGAGATTCGCGGAGAAGATGCTGGAGGGCAAGGTGA
AGGAGGGCGGCGCGGTGGACAAGCAAAACTACAAGTGAATTCGCGGAGAA
GATGCTGGAGGGCAAGGTGAAGGAGGGCGGCGCGGTGGACAAGCAAAACT
ACAAGTGA
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