mRNA_H-elongata_contig58356.13321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58356.13321.1
Unique NamemRNA_H-elongata_contig58356.13321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58356.13321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58356contigH-elongata_contig58356:2218..2655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionNucleoporin Nup54, alpha-helical domain
Ec32 orthologEc-25_002590.1
Exons2
Model size146
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.501334-CDS-H-elongata_contig58356:2218..22841622930946.501334-CDS-H-elongata_contig58356:2218..2284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58356 2219..2284 -
1691679635.84866-CDS-H-elongata_contig58356:2218..22841691679635.84866-CDS-H-elongata_contig58356:2218..2284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58356 2219..2284 -
1622930946.5238206-CDS-H-elongata_contig58356:2577..26551622930946.5238206-CDS-H-elongata_contig58356:2577..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58356 2578..2655 -
1691679635.8586986-CDS-H-elongata_contig58356:2577..26551691679635.8586986-CDS-H-elongata_contig58356:2577..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58356 2578..2655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58356.13321.1prot_H-elongata_contig58356.13321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58356 2219..2655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58356.13321.1

>prot_H-elongata_contig58356.13321.1 ID=prot_H-elongata_contig58356.13321.1|Name=mRNA_H-elongata_contig58356.13321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
AATTDAEGSQLGSTAGEQRASIPLRKGDRQAEEVEEITDPEKLKRIFE
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mRNA from alignment at H-elongata_contig58356:2218..2655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58356.13321.1 ID=mRNA_H-elongata_contig58356.13321.1|Name=mRNA_H-elongata_contig58356.13321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig58356:2218..2655- (Himanthalia elongata Himel1 dioecious)
GCCGCCACAACAGACGCTGAAGGATCTCAACTCGGCTCTACTGCAGGCGA
GCAGCGTGCCTCCATTCCCCTGCGAAAGGTTGTTGTCACTTCGACGAACG
GAATTAATGTACGAGTTTTCTTACAATGAAGTGCCCCCCCCCATATATAC
ACCGCCATCCAAGAATTTGAGCTCTCGTTTTGCGCCGCTGTGTTAAGCGA
CTCGTTCCATGTTTCTTTTTTTATTTTGATAGATCTTGGATAAGTCTCTT
CATTAATCCCTTACCTTCGTTAGCATAAAACTTATCGTCGATCTAGTAAA
TATTGATGTTCTGTCCACGATTGCTTCTGCGCATCAAATTTTAATACGCT
CGGGTGTGTCGCTTCCGACAGGGGGATAGGCAGGCTGAGGAAGTGGAGGA
AATCACGGACCCGGAAAAACTGAAAAGGATTTTCGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig58356:2218..2655-

>mRNA_H-elongata_contig58356.13321.1 ID=mRNA_H-elongata_contig58356.13321.1|Name=mRNA_H-elongata_contig58356.13321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig58356:2218..2655- (Himanthalia elongata Himel1 dioecious)
GCCGCCACAACAGACGCTGAAGGATCTCAACTCGGCTCTACTGCAGGCGA
GCAGCGTGCCTCCATTCCCCTGCGAAAGGCCGCCACAACAGACGCTGAAG
GATCTCAACTCGGCTCTACTGCAGGCGAGCAGCGTGCCTCCATTCCCCTG
CGAAAGGGGGATAGGCAGGCTGAGGAAGTGGAGGAAATCACGGACCCGGA
AAAACTGAAAAGGATTTTCGAGGGGGATAGGCAGGCTGAGGAAGTGGAGG
AAATCACGGACCCGGAAAAACTGAAAAGGATTTTCGAG
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