mRNA_H-elongata_contig58310.13312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58310.13312.1
Unique NamemRNA_H-elongata_contig58310.13312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.100e-37
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   46 LFFLEIPSPSSRRTQVDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPELNDP 321
            LF++           VDS+L PLPV+VRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEW+PS++VLEGVVILTRNPEL+DP
Sbjct:  884 LFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDDP 975
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: A0A6A5ADN9_9STRA (RPN1_C domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ADN9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.470e-29
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:   31 NINRFLFFLEIPSPSSRRTQVDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNP 306
            N + FL+ +           VD   NPLPVSVRVGQAVE VGQAG+PK+ITGFQTH TPVLL V+DRAELAT+E++  T+VLEG+VIL +NP
Sbjct:    8 NSHYFLYCIVTAMQPRMLITVDEQGNPLPVSVRVGQAVEVVGQAGRPKSITGFQTHNTPVLLNVKDRAELATDEYIALTNVLEGIVILRKNP 99
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: A0A0H5R5N8_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R5N8_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 4.820e-29
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:   43 FLFFLEIPSPSSRR-TQVDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNP 306
            +L F  +P+  +R  T +D NLNPLPVSVRVGQAV+TVGQAG PKTIT FQTHTTPVLLG  +RAELAT+E++P +SVLEG+VIL +NP
Sbjct:  830 YLLFSLVPAIRARMLTTLDENLNPLPVSVRVGQAVDTVGQAGSPKTITSFQTHTTPVLLGYNERAELATDEYIPVSSVLEGLVILKKNP 918
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: A0A7S0G4F9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G4F9_9RHOD)

HSP 1 Score: 112 bits (281), Expect = 5.630e-29
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:   46 LFFLEIPSPSSRRTQVDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 309
            L+FL + S       VD +LNPLPV++RVGQAV+TVGQAG PKTITGFQTHT+PVLL   +RAELAT E++P  SVLEG VIL +NP+
Sbjct:  120 LYFLSLSSRPRMVFTVDEDLNPLPVNIRVGQAVDTVGQAGHPKTITGFQTHTSPVLLAAGERAELATEEYLPVASVLEGCVILKKNPD 207
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: A0A7S1TBG1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBG1_9RHOD)

HSP 1 Score: 109 bits (273), Expect = 2.010e-28
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:   46 LFFLEIPSPSSRRTQVDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPELNDP 321
            LF+L +         VD NL PL V+VRVG AV+TVGQAG+PKTITGFQTHT+PVLLG ++RAELAT+E++P ++V EGVVIL +NP    P
Sbjct:   59 LFYLALAVKPRMVYCVDENLEPLAVTVRVGTAVDTVGQAGRPKTITGFQTHTSPVLLGAKERAELATDEYIPLSAVFEGVVILRKNPSYVPP 150
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: F4Q5A0_CAVFA (26S proteasome regulatory subunit S2 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q5A0_CAVFA)

HSP 1 Score: 117 bits (293), Expect = 2.310e-28
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:   91 VDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNP 306
            +D NLNPLPVSVRVGQ+V+TVGQAGKPKTITGFQTHTTPVLLG  DRAELAT++++P +SVLEG+VIL  NP
Sbjct:  793 LDENLNPLPVSVRVGQSVDTVGQAGKPKTITGFQTHTTPVLLGYNDRAELATDDYIPLSSVLEGIVILKPNP 864
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: A0A0G4IJI4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJI4_PLABS)

HSP 1 Score: 116 bits (291), Expect = 4.230e-28
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   91 VDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 309
            +D  L PLPVSVRVGQAV+TVGQAG PKTITGFQTHTTPVLLG  DRAELAT+E++P TSVLEG VIL +NPE
Sbjct:  823 LDEELKPLPVSVRVGQAVDTVGQAGSPKTITGFQTHTTPVLLGYNDRAELATDEYIPVTSVLEGFVILKKNPE 895
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: A0A0P1AZB9_PLAHL (26s proteasome non-atpase regulatory subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AZB9_PLAHL)

HSP 1 Score: 116 bits (290), Expect = 5.770e-28
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:   91 VDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNP 306
            +D  LNPLPVSVRVGQAVE VGQAG+PK+ITGFQTHTTPVLL VRDRAELAT E++P T+VLEGVVIL +NP
Sbjct:  820 LDEELNPLPVSVRVGQAVEIVGQAGRPKSITGFQTHTTPVLLNVRDRAELATEEYLPLTNVLEGVVILRKNP 891
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BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: M4B1J0_HYAAE (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4B1J0_HYAAE)

HSP 1 Score: 116 bits (290), Expect = 5.770e-28
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   91 VDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 309
            +D  LNPLPVSVRVGQAVE VGQAG+PK+ITGFQTHTTPVLL V+DRAELAT+E++P T+VLEGVVIL +NP+
Sbjct:  822 LDEELNPLPVSVRVGQAVEIVGQAGRPKSITGFQTHTTPVLLNVKDRAELATDEYLPLTNVLEGVVILRKNPD 894
[Close]
BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Match: K3W6K9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6K9_GLOUD)

HSP 1 Score: 115 bits (289), Expect = 7.880e-28
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   91 VDSNLNPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 309
            +D  LNPLPVSVRVGQAVE VGQAG+PK+ITGFQTHTTPVLL V+DRAELAT E++P T+VLEGVVIL +NP+
Sbjct:  823 LDEELNPLPVSVRVGQAVEIVGQAGRPKSITGFQTHTTPVLLNVKDRAELATEEYLPLTNVLEGVVILRKNPD 895
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58310.13312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5T2_9PHAE2.100e-3778.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A5ADN9_9STRA2.470e-2961.96RPN1_C domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A0H5R5N8_9EUKA4.820e-2968.54Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A7S0G4F9_9RHOD5.630e-2964.77Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TBG1_9RHOD2.010e-2860.87Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
F4Q5A0_CAVFA2.310e-2879.1726S proteasome regulatory subunit S2 n=1 Tax=Caven... [more]
A0A0G4IJI4_PLABS4.230e-2879.45Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0P1AZB9_PLAHL5.770e-2880.5626s proteasome non-atpase regulatory subunit 2 n=2... [more]
M4B1J0_HYAAE5.770e-2878.08Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
K3W6K9_GLOUD7.880e-2878.08Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58310contigH-elongata_contig58310:2936..3621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue4.3e-25
Seed eggNOG ortholog42099.EPrPV00000021091
Preferred nameRPN1
KEGG koko:K03028
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0001101,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010498,GO:0014070,GO:0016020,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030163,GO:0031597,GO:0032182,GO:0032991,GO:0034515,GO:0042221,GO:0042493,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045087,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051726,GO:0055044,GO:0065007,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.26S proteasome non-ATPase regulatory subunit 2. Source PGD
EggNOG OGs1MG4Q@121069,COG5110@1,KOG2005@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58310.13312.1prot_H-elongata_contig58310.13312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58310 2936..3594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.462855-CDS-H-elongata_contig58310:2935..30221622930945.462855-CDS-H-elongata_contig58310:2935..3022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58310 2936..3022 -
1691679635.4869502-CDS-H-elongata_contig58310:2935..30221691679635.4869502-CDS-H-elongata_contig58310:2935..3022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58310 2936..3022 -
1622930945.484198-CDS-H-elongata_contig58310:3384..35941622930945.484198-CDS-H-elongata_contig58310:3384..3594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58310 3385..3594 -
1691679635.5069408-CDS-H-elongata_contig58310:3384..35941691679635.5069408-CDS-H-elongata_contig58310:3384..3594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58310 3385..3594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.501486-UTR-H-elongata_contig58310:3594..36211622930945.501486-UTR-H-elongata_contig58310:3594..3621Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58310 3595..3621 -
1691679635.5210392-UTR-H-elongata_contig58310:3594..36211691679635.5210392-UTR-H-elongata_contig58310:3594..3621Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58310 3595..3621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58310.13312.1

>prot_H-elongata_contig58310.13312.1 ID=prot_H-elongata_contig58310.13312.1|Name=mRNA_H-elongata_contig58310.13312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MNINRFLFFLEIPSPSSRRTQVDSNLNPLPVSVRVGQAVETVGQAGKPKT
ITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPELNDPT
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mRNA from alignment at H-elongata_contig58310:2936..3621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58310.13312.1 ID=mRNA_H-elongata_contig58310.13312.1|Name=mRNA_H-elongata_contig58310.13312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=686bp|location=Sequence derived from alignment at H-elongata_contig58310:2936..3621- (Himanthalia elongata Himel1 dioecious)
ACAAACACACACACCCTGCTATGCTACATGAACATAAATCGTTTCTTATT
TTTTTTAGAGATTCCTTCTCCGTCCTCTCGCCGAACGCAGGTCGACTCCA
ACCTGAATCCGTTGCCGGTGAGCGTGCGGGTGGGGCAGGCGGTGGAGACG
GTAGGACAGGCCGGGAAGCCTAAGACTATCACGGGCTTCCAGACGCACAC
GACTCCGGTGCTGCTGGGAGTGCGAGACCGAGCAGAGGTGATGGTGCTTA
GGATTCGACAAGTCCGGTGCTTAGGATCCGTGAGGCTCCCCACCCCCCCT
CTAACCCTGGCCTTGAGATTTCGTAAGAGTTCAATTCGAGACCGTCAAAG
CACGCGCATTCACCTGATTGAACGTTGCAACTGCCGCCCTCCTCCCACGC
CGTCGGTTTATTTATCCCCCGTCCCCTCCTCGAAATCCCTATGTGTGTGT
TCAAACATGAATAATATTAATCTGACTTTGAAAATATGAACATTTTCCTT
CTAACTATTTATAGTCCAATGTCCCTCCCCTCCCCTCCCCTCCCCTGTCC
CCCCTCGCCAAATATCCTCAATCAATTTATCTTTTTCAACCGTGGAAAGT
TGGCGACGAACGAGTGGGTGCCCTCTACTAGCGTTCTTGAGGGCGTGGTG
ATTCTCACACGGAACCCGGAGTTGAACGACCCCACG
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Coding sequence (CDS) from alignment at H-elongata_contig58310:2936..3621-

>mRNA_H-elongata_contig58310.13312.1 ID=mRNA_H-elongata_contig58310.13312.1|Name=mRNA_H-elongata_contig58310.13312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig58310:2936..3621- (Himanthalia elongata Himel1 dioecious)
ATGAACATAAATCGTTTCTTATTTTTTTTAGAGATTCCTTCTCCGTCCTC
TCGCCGAACGCAGGTCGACTCCAACCTGAATCCGTTGCCGGTGAGCGTGC
GGGTGGGGCAGGCGGTGGAGACGGTAGGACAGGCCGGGAAGCCTAAGACT
ATCACGGGCTTCCAGACGCACACGACTCCGGTGCTGCTGGGAGTGCGAGA
CCGAGCAGAGATGAACATAAATCGTTTCTTATTTTTTTTAGAGATTCCTT
CTCCGTCCTCTCGCCGAACGCAGGTCGACTCCAACCTGAATCCGTTGCCG
GTGAGCGTGCGGGTGGGGCAGGCGGTGGAGACGGTAGGACAGGCCGGGAA
GCCTAAGACTATCACGGGCTTCCAGACGCACACGACTCCGGTGCTGCTGG
GAGTGCGAGACCGAGCAGAGTTGGCGACGAACGAGTGGGTGCCCTCTACT
AGCGTTCTTGAGGGCGTGGTGATTCTCACACGGAACCCGGAGTTGAACGA
CCCCACGTTGGCGACGAACGAGTGGGTGCCCTCTACTAGCGTTCTTGAGG
GCGTGGTGATTCTCACACGGAACCCGGAGTTGAACGACCCCACG
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