mRNA_H-elongata_contig58291.13310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58291.13310.1
Unique NamemRNA_H-elongata_contig58291.13310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58291.13310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58291contigH-elongata_contig58291:801..1617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58291.13310.1prot_H-elongata_contig58291.13310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58291 853..1617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.3350644-UTR-H-elongata_contig58291:800..8521622930945.3350644-UTR-H-elongata_contig58291:800..852Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58291 801..852 +
1691679635.4376435-UTR-H-elongata_contig58291:800..8521691679635.4376435-UTR-H-elongata_contig58291:800..852Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58291 801..852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.3493292-CDS-H-elongata_contig58291:852..8881622930945.3493292-CDS-H-elongata_contig58291:852..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58291 853..888 +
1691679635.445961-CDS-H-elongata_contig58291:852..8881691679635.445961-CDS-H-elongata_contig58291:852..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58291 853..888 +
1622930945.3629596-CDS-H-elongata_contig58291:1380..16171622930945.3629596-CDS-H-elongata_contig58291:1380..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58291 1381..1617 +
1691679635.4547083-CDS-H-elongata_contig58291:1380..16171691679635.4547083-CDS-H-elongata_contig58291:1380..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58291 1381..1617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58291.13310.1

>prot_H-elongata_contig58291.13310.1 ID=prot_H-elongata_contig58291.13310.1|Name=mRNA_H-elongata_contig58291.13310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MAPTATSTFQRLVVMSHAVSSIEADDECVLQMDRESGTMKCKRGAADGAA
DSSRGGFSCWSRYWTFLSVARRLLGAQKIVCGSPRRSPQSA
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mRNA from alignment at H-elongata_contig58291:801..1617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58291.13310.1 ID=mRNA_H-elongata_contig58291.13310.1|Name=mRNA_H-elongata_contig58291.13310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=817bp|location=Sequence derived from alignment at H-elongata_contig58291:801..1617+ (Himanthalia elongata Himel1 dioecious)
CATTATTTAATCATCAGGGCCCTCGAGGGTTAACCTGCCAGACGCCCCAG
TGATGGCGCCAACAGCCACCAGCACATTCCAAAGACTGGTGAGTACACAC
TGCGAAACAATCGGTATCGCGTTCATCAAGTAATTTTCGAACCATTGCGT
CAAAGGCGATTTGGAATCCGCTTATGAGCGTTTGGCAAGAACAGCAAACC
ATTTATTGACCGCGGGGGTGAGGGGAGGGGGGAGGGGGGGGTCAAAGCTT
TGCTACCACCCCGGATGACACCCGCTGACTCAGCAAACAGCTCCTCTAGC
CTGCCCCATGCGGCATATGTACCCTACTTTATCCTCGATGCTTCAGTATG
CACGGACCGCGCAGTCGTCATTCCGTAACTCAGTCGAATAAGTTCATGAA
CGGGCCTCCAAATAACTTATTAGCGCCAAAAAGAATCTTCAAGAAAACAT
TCAAAATCGCGGGGGGGGGGTATCGACGCGGAACTTGGTGTTTTATTTTT
CTTCCTTTACCTGAGCAGAGCTTGCCACGGCTTGTGCTAAGAGAGGCAGC
GTCACCGTCGGCTGCACGTGTTGACGACAGGTTGTCATGTCGCACGCGGT
GAGCAGCATCGAGGCAGATGATGAGTGCGTCTTACAAATGGATCGGGAAT
CGGGGACGATGAAATGCAAACGGGGGGCAGCGGACGGCGCCGCCGACTCA
AGCCGGGGGGGATTCTCCTGTTGGTCAAGATACTGGACCTTCTTGAGTGT
CGCACGAAGACTTCTCGGAGCTCAAAAGATCGTGTGTGGTTCTCCTCGGC
GGTCTCCACAATCAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig58291:801..1617+

>mRNA_H-elongata_contig58291.13310.1 ID=mRNA_H-elongata_contig58291.13310.1|Name=mRNA_H-elongata_contig58291.13310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig58291:801..1617+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCCAACAGCCACCAGCACATTCCAAAGACTGATGGCGCCAACAGC
CACCAGCACATTCCAAAGACTGGTTGTCATGTCGCACGCGGTGAGCAGCA
TCGAGGCAGATGATGAGTGCGTCTTACAAATGGATCGGGAATCGGGGACG
ATGAAATGCAAACGGGGGGCAGCGGACGGCGCCGCCGACTCAAGCCGGGG
GGGATTCTCCTGTTGGTCAAGATACTGGACCTTCTTGAGTGTCGCACGAA
GACTTCTCGGAGCTCAAAAGATCGTGTGTGGTTCTCCTCGGCGGTCTCCA
CAATCAGCGGTTGTCATGTCGCACGCGGTGAGCAGCATCGAGGCAGATGA
TGAGTGCGTCTTACAAATGGATCGGGAATCGGGGACGATGAAATGCAAAC
GGGGGGCAGCGGACGGCGCCGCCGACTCAAGCCGGGGGGGATTCTCCTGT
TGGTCAAGATACTGGACCTTCTTGAGTGTCGCACGAAGACTTCTCGGAGC
TCAAAAGATCGTGTGTGGTTCTCCTCGGCGGTCTCCACAATCAGCG
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