mRNA_H-elongata_contig58225.13303.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58225.13303.1
Unique NamemRNA_H-elongata_contig58225.13303.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: D8LK79_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK79_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.130e-32
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 LMAQSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            L  QS+ECV AVTERL+KMGIAGHQTTAGAERQVD A  +M +L  K E  FG   +E P L +V ECMD+FRQAAELYSAA DPRHEEVLA +H FLQ+  V++ L
Sbjct:  335 LTPQSYECVQAVTERLEKMGIAGHQTTAGAERQVDHASSLMAALGRK-EAQFGV--RERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSAL 438          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A6H5KXF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.760e-32
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 LMAQSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            L  QS+ECV AVTERL+KMGIAGHQTTAGAER+VD A  +M +L  K E  FG   +E P L +V ECMD+FRQAAELYSAA DPRHEEVLA +H FLQ+  V++ L
Sbjct:  363 LTPQSYECVKAVTERLEKMGIAGHQTTAGAERRVDHASSLMAALGRK-EAQFGA--RERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSAL 466          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A6S9CL72_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9CL72_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.060e-13
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   10 QSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            QS  CV  +   L++ G+ G  T A  +R +  A  ++  ++ K + +        PS+  V   MD++RQAAE +  AGDPRHEEV+  +H+FL +P+VI++L
Sbjct:  399 QSALCVQEIQTVLKRHGVKGKHTNAATQRAIQMALSLVSEIQTKEKALANS-----PSVEKVDNIMDLYRQAAEKFEVAGDPRHEEVMTHMHKFLAKPLVISIL 497          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A7S2DZK0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZK0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.070e-13
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   10 QSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            QS   V  +   L++ G+ G  T A  +R +  A  ++  ++ K + +  G     P++  V E MD++RQAAE +  AGDPRHEEV++ +H+FL +P+V+++L
Sbjct:  425 QSASAVQEIQAVLKRHGVKGKHTNAATQRAIQMALALVAEIQTKEKSLVNG-----PTVEKVDEIMDLYRQAAEKFEVAGDPRHEEVMSHMHKFLAKPLVMSIL 523          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A7R9WHH8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHH8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.850e-12
Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   10 QSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            +S +CV  +   L++ G+ G  T A  +R +  A  I+  ++ +   +     + +P++A V E MD++RQAAE +  AGDPRHEEV+  + +FL +P+  ++L
Sbjct:  151 ESADCVQQIQTVLKRHGVRGKHTNAATQRSIQAALSIVAEIQRRERAL-----ESNPTVAAVNEIMDLYRQAAEKFEQAGDPRHEEVMGHMRKFLAKPLTASIL 249          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A6U6D8Y3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6D8Y3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.190e-11
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   13 SHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            S ECV  +   L++ G+ G  T A  +R +  A  I+  ++ +  ++     +  P++  V E MD++RQAAE +  AGDPRHEEV+  + +FL +P+  ++L
Sbjct:  488 SAECVQQIQTVLKRHGVRGKHTNAATQRSIQAALSIVAEIQRRERQL-----ESTPTVESVNEIMDLYRQAAEKFEQAGDPRHEEVMGHMRKFLAKPLTASIL 585          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A7S2LQS3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQS3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.970e-10
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   46 LQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            L++ G+ G  T A  +R +  A  ++  ++ K +E+      + P++  V E MD++RQAAE + +AGDPRHEEV+A +  FL Q    ++L
Sbjct:  468 LKQKGVKGKHTNAATQRAIQMALNLVALIQEKEKELL-----DQPTVDRVNEIMDLYRQAAEKFESAGDPRHEEVMAHMKRFLNQKFTTSIL 554          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: K0R738_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R738_THAOC)

HSP 1 Score: 63.9 bits (154), Expect = 1.260e-9
Identity = 32/92 (34.78%), Postives = 54/92 (58.70%), Query Frame = 1
Query:   46 LQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            L++ G+ G  T A  ++ V  A  ++  ++ K +E+      +HP+   V E MD++RQAAE + +AGDPRH EV++ +  FL Q    ++L
Sbjct:  425 LKRHGVKGKHTNAATQKAVQMALNLVALIQHKEKELI-----DHPTTDRVNEIMDLYRQAAEKFESAGDPRHSEVMSHMQRFLSQQFTTSIL 511          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A1Z5JD16_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD16_FISSO)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-9
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   13 SHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            S + V  +   L+  G+ G  T A A R +++A  ++  ++ K  E+   A +  P++  V E MD++RQAAE + AAGD RHEEV+  + +FL  P+ +++L
Sbjct:  353 SADAVHQIQSVLKDHGVRGKHTNAAAYRAINEAMQLVQEIQTK--EL---ALKHDPTVNRVNEIMDLYRQAAERFEAAGDLRHEEVVIHMRKFLALPLTVSIL 450          
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: B8BS43_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS43_THAPS)

HSP 1 Score: 61.6 bits (148), Expect = 8.210e-9
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   46 LQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
            L+  G+ G  T A  +R V  A  ++  ++ K  E+      ++P++  V E MD++RQAAE +  AGDPRH EV+A +  FL Q    ++L
Sbjct:  492 LKSHGVKGKHTNAATQRAVQMALNMVQLIQQKEAELI-----DNPNVDRVNEIMDLYRQAAEKFEQAGDPRHTEVMAHMKRFLNQAFTTSIL 578          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LK79_ECTSI1.130e-3266.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXF8_9PHAE1.760e-3265.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S9CL72_9STRA2.060e-1336.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2DZK0_9STRA2.070e-1335.58Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9WHH8_9STRA2.850e-1233.65Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U6D8Y3_9STRA1.190e-1133.98Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2LQS3_9STRA4.970e-1035.87Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0R738_THAOC1.260e-934.78Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5JD16_FISSO4.310e-934.95Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B8BS43_THAPS8.210e-935.87Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58225contigH-elongata_contig58225:1847..3315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue7.5e-28
Seed eggNOG ortholog2880.D8LK79
EggNOG OGs2CDVM@1,2SBA9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size321
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58225.13303.1prot_H-elongata_contig58225.13303.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58225 1847..3312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.6399715-CDS-H-elongata_contig58225:1846..19001622930944.6399715-CDS-H-elongata_contig58225:1846..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58225 1847..1900 -
1691679635.1984-CDS-H-elongata_contig58225:1846..19001691679635.1984-CDS-H-elongata_contig58225:1846..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58225 1847..1900 -
1622930944.657012-CDS-H-elongata_contig58225:2569..26951622930944.657012-CDS-H-elongata_contig58225:2569..2695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58225 2570..2695 -
1691679635.2107708-CDS-H-elongata_contig58225:2569..26951691679635.2107708-CDS-H-elongata_contig58225:2569..2695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58225 2570..2695 -
1622930944.674806-CDS-H-elongata_contig58225:3174..33121622930944.674806-CDS-H-elongata_contig58225:3174..3312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58225 3175..3312 -
1691679635.219611-CDS-H-elongata_contig58225:3174..33121691679635.219611-CDS-H-elongata_contig58225:3174..3312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58225 3175..3312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.6916084-UTR-H-elongata_contig58225:3312..33151622930944.6916084-UTR-H-elongata_contig58225:3312..3315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58225 3313..3315 -
1691679635.2285712-UTR-H-elongata_contig58225:3312..33151691679635.2285712-UTR-H-elongata_contig58225:3312..3315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58225 3313..3315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58225.13303.1

>prot_H-elongata_contig58225.13303.1 ID=prot_H-elongata_contig58225.13303.1|Name=mRNA_H-elongata_contig58225.13303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MAQSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEM
FGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQP
VVIAVL
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mRNA from alignment at H-elongata_contig58225:1847..3315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58225.13303.1 ID=mRNA_H-elongata_contig58225.13303.1|Name=mRNA_H-elongata_contig58225.13303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-elongata_contig58225:1847..3315- (Himanthalia elongata Himel1 dioecious)
CTAATGGCGCAGTCTCACGAGTGTGTGGTGGCCGTGACGGAACGGCTACA GAAGATGGGCATAGCGGGACACCAGACCACGGCAGGGGCGGAGCGACAGG TGGACCAAGCCAAGTTCATCATGGATTCCCTCAAGATAAAGGTGGCGTTA TTTTTAAGGGTATGGGGGATATTTATCGTATTCTGGGAAGGCGTGCAGTA CAGCAAGAGGGAGTGTTGAAGAGGGTAGGTACACGTAGCGCAGATATATA CGTCATTATTAGACCCTCCGTACGTATTCATGTAACGTGTTTATACGCGT TCATATACGGCTGCAGTTGGACATCGAGGTTGTAGGAATTTCGTGAGGCG TTTCTTTTAACACGGCCCGGAGGTCATCGGCTGTGTTTGCGCATGTACAG ATATATGTGGTTAGGCAGGCAAGTAAGGATGTGTGTGTTGTGTACCCGTG TGTTTTATGTATCTGAATGTCTTGTTTATGTCTTGGGTCCACCTGAATGT CTTGTTTATGTATGAATACGTCTATTCGTCTAACTCTGCATGTATCTGTG TTTAATGAATTGTGCGACATATTAAATTTTACATAACCGTGTGTGTGTTT TTGGGGGGTAGGCTGCACAGCTGGAGGAGATGTTCGGCGGTGCGGACCAA GAGCACCCGTCTCTGGCGATGGTCGGAGAGTGCATGGACATGTTCAGGCA GGCCGCCGAGCTGTACTCGGCTGCCGGGGACCCACGCCACGAAGAGGTCA GAGAGACACTAACCATAACCCTACACTCATACGTTGCAAATTATCGACGA AAAGTATGTTCCTCCCTCAGGACAGGCAGGCATTGAGAGGCGTCTAATGC TGATGGTGATGGTCATATTGGATTCCTGGGGAAAAAACAGACGGGCTCGT GGCCTCTGGGTGTTTTTCTTTTCCATGATGCCCCCCTCCCGACTCTTCGG TAAACATAACACTCTGAAACTTTTCTCATAGTGTAGGGCAGCGTTTTGTG TGAGATAATGATGTCGTCGTCCGTGTTCCATGAGGCCGTGCGGCCATGGT GACAAAGCTATCCCTCGGTTGGTGTTATCGATCCGCCATCCCCCCTTTAT TTCATTTTTGGTATTGTTTTGAATCTCGCGGTGACTCGTGCACGATAAGA GGGTCTTATATTAATATCAATATTATATGTACTATATACTATATATGCTA TAGAAACAATAAAAAGGATTGATGATGTCAAGAGAGCCGTTGTCAGTTGT CAGTTGGGAGGCAGCTTACTTTTCCCGGCAATTTCCTTGCCTTTCCCCCC TAGACCCCTATAACCCTAGAGCAGCGAAACTATATGTATAGAAATATATT TGTTTGTTTTATCTCGTGTGTGAGGGCCTTGGGTGTTTCGCCTCGTCCTG AACTAACCCTAACAGGTGCTGGCACAGCTGCACGAGTTCCTCCAGCAGCC CGTTGTAATCGCTGTTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig58225:1847..3315-

>mRNA_H-elongata_contig58225.13303.1 ID=mRNA_H-elongata_contig58225.13303.1|Name=mRNA_H-elongata_contig58225.13303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig58225:1847..3315- (Himanthalia elongata Himel1 dioecious)
ATGGCGCAGTCTCACGAGTGTGTGGTGGCCGTGACGGAACGGCTACAGAA
GATGGGCATAGCGGGACACCAGACCACGGCAGGGGCGGAGCGACAGGTGG
ACCAAGCCAAGTTCATCATGGATTCCCTCAAGATAAAGATGGCGCAGTCT
CACGAGTGTGTGGTGGCCGTGACGGAACGGCTACAGAAGATGGGCATAGC
GGGACACCAGACCACGGCAGGGGCGGAGCGACAGGTGGACCAAGCCAAGT
TCATCATGGATTCCCTCAAGATAAAGCTGGAGGAGATGTTCGGCGGTGCG
GACCAAGAGCACCCGTCTCTGGCGATGGTCGGAGAGTGCATGGACATGTT
CAGGCAGGCCGCCGAGCTGTACTCGGCTGCCGGGGACCCACGCCACGAAG
AGCTGGAGGAGATGTTCGGCGGTGCGGACCAAGAGCACCCGTCTCTGGCG
ATGGTCGGAGAGTGCATGGACATGTTCAGGCAGGCCGCCGAGCTGTACTC
GGCTGCCGGGGACCCACGCCACGAAGAGGTGCTGGCACAGCTGCACGAGT
TCCTCCAGCAGCCCGTTGTAATCGCTGTTCTTGTGCTGGCACAGCTGCAC
GAGTTCCTCCAGCAGCCCGTTGTAATCGCTGTTCTT
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