mRNA_H-elongata_contig5821.13302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5821.13302.1
Unique NamemRNA_H-elongata_contig5821.13302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5821.13302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5821contigH-elongata_contig5821:10204..11184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size291
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5821.13302.1prot_H-elongata_contig5821.13302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5821 10204..11184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.5461822-CDS-H-elongata_contig5821:10203..102671622930944.5461822-CDS-H-elongata_contig5821:10203..10267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 10204..10267 +
1691679635.1630359-CDS-H-elongata_contig5821:10203..102671691679635.1630359-CDS-H-elongata_contig5821:10203..10267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 10204..10267 +
1622930944.5582352-CDS-H-elongata_contig5821:10532..106281622930944.5582352-CDS-H-elongata_contig5821:10532..10628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 10533..10628 +
1691679635.1738608-CDS-H-elongata_contig5821:10532..106281691679635.1738608-CDS-H-elongata_contig5821:10532..10628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 10533..10628 +
1622930944.5746102-CDS-H-elongata_contig5821:10910..110061622930944.5746102-CDS-H-elongata_contig5821:10910..11006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 10911..11006 +
1691679635.181746-CDS-H-elongata_contig5821:10910..110061691679635.181746-CDS-H-elongata_contig5821:10910..11006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 10911..11006 +
1622930944.5919633-CDS-H-elongata_contig5821:11149..111841622930944.5919633-CDS-H-elongata_contig5821:11149..11184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 11150..11184 +
1691679635.189335-CDS-H-elongata_contig5821:11149..111841691679635.189335-CDS-H-elongata_contig5821:11149..11184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5821 11150..11184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5821.13302.1

>prot_H-elongata_contig5821.13302.1 ID=prot_H-elongata_contig5821.13302.1|Name=mRNA_H-elongata_contig5821.13302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
ANRATGTHAHSATSVSAYDTTCHTTFSATDSIAHGATGTHAHTGASLGAY
DATGHTTFSATDSIPHRATGTHAHSATSFGAYDATGHTTFSATDSIA
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mRNA from alignment at H-elongata_contig5821:10204..11184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5821.13302.1 ID=mRNA_H-elongata_contig5821.13302.1|Name=mRNA_H-elongata_contig5821.13302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at H-elongata_contig5821:10204..11184+ (Himanthalia elongata Himel1 dioecious)
GCCAACAGAGCCACCGGCACTCACGCCCACAGCGCCACAAGCGTCAGCGC
CTACGATACAACCTGTAAGTTCAACTACGCCGCTCGCGCCACGGTCCACG
GAGGCGCCACCTGTGCCACCGGCAACGGTACTCTCGAAGGCTCACGTCAC
ACGCTTCTGTCGTGCCACATGTAGCACCGCCCACAGAGCCACCAGCACCC
ATGCCCACAGCGACGCCAGGTGTGCCACCCGTGACTTCACCTGTTTCTCC
GCCTTCGGCGCCACCGGCAGCCACACTCTCTACGCCCCCCGTAACCGCCG
CAACGTCAAACTCGTCCGCTGCACCACAGGTCACACCACCTTCAGCGCCA
CCGATAGTATCGCCCACGGAGCCACCGGCACCCACGCCCACACCGGCGCC
AGCCTCGGCGCCTACGACGCCACCGGTAAGTCTTCACTGCCTACGTCGCA
GGCAGTTTCTGCACCTGTACCACGGGCAACGGTACTCTCGAAGGCTCCCG
TCACACGCTTCTGTCGTGCCACATGTAGCATCGCCCACAGAGCCACCGGC
ACCCATGCCTACAGCGACGCCAGGTGTGCCAACCGCGATTTCAATGGTTT
CTCCGCCTACGTCGCAGCCGATTTCTTCGCCTTCGGCGCCACCGGCAGCC
GCACTCTCTACACTCCCCGTAACCGCCGCAACGTCAAACTCGTCCGCTGC
ACCACAGGTCACACCACCTTCAGCGCCACCGATAGTATCCCCCACAGAGC
TACCGGCACCCACGCCCACAGCGCAACCAGCTTCGGCGCCTACGACGCCA
CCGGTAAGTCTTCCCTCAGCGACGCCAGGTGTGCCAACCGCCGCAGCCGG
TTTCTTCGCCTTCGGCGCCACCGGCAGCCGCCGGCAGCCGCACTCTCTAC
ACTACCCGTAACCGCCGCAACGTCAAACCTGTCCGCTGCACCACAGGTCA
CACCACCTTCAGCGCCACCGATAGCATCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig5821:10204..11184+

>mRNA_H-elongata_contig5821.13302.1 ID=mRNA_H-elongata_contig5821.13302.1|Name=mRNA_H-elongata_contig5821.13302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig5821:10204..11184+ (Himanthalia elongata Himel1 dioecious)
GCCAACAGAGCCACCGGCACTCACGCCCACAGCGCCACAAGCGTCAGCGC
CTACGATACAACCTGCCAACAGAGCCACCGGCACTCACGCCCACAGCGCC
ACAAGCGTCAGCGCCTACGATACAACCTGTCACACCACCTTCAGCGCCAC
CGATAGTATCGCCCACGGAGCCACCGGCACCCACGCCCACACCGGCGCCA
GCCTCGGCGCCTACGACGCCACCGGTCACACCACCTTCAGCGCCACCGAT
AGTATCGCCCACGGAGCCACCGGCACCCACGCCCACACCGGCGCCAGCCT
CGGCGCCTACGACGCCACCGGTCACACCACCTTCAGCGCCACCGATAGTA
TCCCCCACAGAGCTACCGGCACCCACGCCCACAGCGCAACCAGCTTCGGC
GCCTACGACGCCACCGGTCACACCACCTTCAGCGCCACCGATAGTATCCC
CCACAGAGCTACCGGCACCCACGCCCACAGCGCAACCAGCTTCGGCGCCT
ACGACGCCACCGGTCACACCACCTTCAGCGCCACCGATAGCATCGCCGTC
ACACCACCTTCAGCGCCACCGATAGCATCGCC
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