mRNA_H-elongata_contig58194.13300.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58194.13300.1
Unique NamemRNA_H-elongata_contig58194.13300.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58194.13300.1 vs. uniprot
Match: A0A6H5KK48_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK48_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 4.690e-136
Identity = 222/327 (67.89%), Postives = 263/327 (80.43%), Query Frame = 1 
Query:    1 VGNLRDLMAPLIYTVDANGIELFSRADGRLRVLDRMLDPSEQALAEKVKRVVFQLREAEACRTRVEQRSRFEGGPGGK-EDASLLHHWVEELDQFAEDEQRFMDKMRRIVNDFVNDWGEAMLGPLAEHFLEETSTGEVASEVESGLDR--EGLAGLWPRLSKICESMQGLEASRTKVELARQMVVDQSNPESIAHALVKIQDLLIDAEEENVGLGEELLQETHGDLNSLEDCLNRAGWKLEKLVESLPTLPITLEEVEQRTAKWKDLSRKHGVLPERLGSMQAQLRVELDDLIVAEEALPLAIERETHWRIMAERAAGELSGIRRRS 972
            +G LR+LM+PLIYTVDAN  ELFSRADGR+R LDRM  P+E ALA+K + VV QL++AEA R R+EQR RFEGGPGG  +DASLLHHWVEELD+F E E  FMD+MR IV  FV+DWGE +LGPLAE FL  T   +   + E GL    EGL+ LWPRLS++ E M+ LEASRTKVELARQ+ V+QSNP+SIAHA+VKI+ LLIDAE+ENVGL ++LL+ TH DLNSL+D +   G KLE+ VESLP LPITLEEVE+RT KW+DL+RKHGV PERLGSMQAQLRVELD+L+VA EALPLA E+E  WR  AE AAGELS +RRR+
Sbjct:  269 LGALRELMSPLIYTVDANAFELFSRADGRMRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPGGSADDASLLHHWVEELDEFREGEMAFMDRMRSIVERFVDDWGEDILGPLAEPFLSGTLLSD--KDAEEGLRGGVEGLSDLWPRLSRVREGMEDLEASRTKVELARQLAVEQSNPDSIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWRDLARKHGVPPERLGSMQAQLRVELDELVVAAEALPLAREKEERWRAAAEEAAGELSAVRRRA 593
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58194.13300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KK48_9PHAE4.690e-13667.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58194contigH-elongata_contig58194:559..2748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score413.7
Seed ortholog evalue7.8e-113
Seed eggNOG ortholog2880.D8LCA1
EggNOG free text desc.May be involved in recombinational repair of damaged DNA
EggNOG OGs2RZ0Y@2759,COG0497@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_005520.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size972
Cds size951
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.3142283-UTR-H-elongata_contig58194:558..5791622930944.3142283-UTR-H-elongata_contig58194:558..579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58194 559..579 +
1691679635.063383-UTR-H-elongata_contig58194:558..5791691679635.063383-UTR-H-elongata_contig58194:558..579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58194 559..579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.326528-CDS-H-elongata_contig58194:579..6991622930944.326528-CDS-H-elongata_contig58194:579..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 580..699 +
1691679635.0730827-CDS-H-elongata_contig58194:579..6991691679635.0730827-CDS-H-elongata_contig58194:579..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 580..699 +
1622930944.3412614-CDS-H-elongata_contig58194:952..11281622930944.3412614-CDS-H-elongata_contig58194:952..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 953..1128 +
1691679635.0809412-CDS-H-elongata_contig58194:952..11281691679635.0809412-CDS-H-elongata_contig58194:952..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 953..1128 +
1622930944.3597314-CDS-H-elongata_contig58194:1456..17271622930944.3597314-CDS-H-elongata_contig58194:1456..1727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 1457..1727 +
1691679635.0898397-CDS-H-elongata_contig58194:1456..17271691679635.0898397-CDS-H-elongata_contig58194:1456..1727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 1457..1727 +
1622930944.375251-CDS-H-elongata_contig58194:1968..20751622930944.375251-CDS-H-elongata_contig58194:1968..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 1969..2075 +
1691679635.0987132-CDS-H-elongata_contig58194:1968..20751691679635.0987132-CDS-H-elongata_contig58194:1968..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 1969..2075 +
1622930944.3908796-CDS-H-elongata_contig58194:2280..23711622930944.3908796-CDS-H-elongata_contig58194:2280..2371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 2281..2371 +
1691679635.107641-CDS-H-elongata_contig58194:2280..23711691679635.107641-CDS-H-elongata_contig58194:2280..2371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 2281..2371 +
1622930944.4066973-CDS-H-elongata_contig58194:2562..27481622930944.4066973-CDS-H-elongata_contig58194:2562..2748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 2563..2748 +
1691679635.1185517-CDS-H-elongata_contig58194:2562..27481691679635.1185517-CDS-H-elongata_contig58194:2562..2748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58194 2563..2748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58194.13300.1prot_H-elongata_contig58194.13300.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58194 580..2748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58194.13300.1

>prot_H-elongata_contig58194.13300.1 ID=prot_H-elongata_contig58194.13300.1|Name=mRNA_H-elongata_contig58194.13300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MAPLIYTVDANGIELFSRADGRLRVLDRMLDPSEQALAEKVKRVVFQLRE
AEACRTRVEQRSRFEGGPGGKEDASLLHHWVEELDQFAEDEQRFMDKMRR
IVNDFVNDWGEAMLGPLAEHFLEETSTGEVASEVESGLDREGLAGLWPRL
SKICESMQGLEASRTKVELARQMVVDQSNPESIAHALVKIQDLLIDAEEE
NVGLGEELLQETHGDLNSLEDCLNRAGWKLEKLVESLPTLPITLEEVEQR
TAKWKDLSRKHGVLPERLGSMQAQLRVELDDLIVAEEALPLAIERETHWR
IMAERAAGELSGIRRRS
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mRNA from alignment at H-elongata_contig58194:559..2748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58194.13300.1 ID=mRNA_H-elongata_contig58194.13300.1|Name=mRNA_H-elongata_contig58194.13300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2190bp|location=Sequence derived from alignment at H-elongata_contig58194:559..2748+ (Himanthalia elongata Himel1 dioecious)
GTGGGCAACCTCCGTGACCTCATGGCTCCTCTCATCTATACCGTGGACGC
CAACGGTATCGAGCTCTTCTCGCGTGCGGATGGCCGCCTGCGGGTGTTGG
ATCGCATGCTGGACCCTTCGGAACAAGCCCTGGCGGAGAAGGTAAGCGAT
GTCTGACACTTTAGCGCTTTCCATGAACCCTGATAGCTGCCAACTTTACA
TGACACGTGCGGGATAACGGGAGACAAGGAGCGAGAGCAGTATGCGCGTG
AGTTGTTGTGCCAACTGCTCCCTTCCTTCCTAAATGCGAGGCTCGACCCT
GTAGCCGCGTTCTCCCGTGTGTATACTCTTGATCCTCTCCTGTTATTTTG
TTTGATATTCGTTTTCCGGGTCATCGGCCTTCGTCTCTTACTAGGTAAAA
CGAGTGGTTTTCCAGCTGAGGGAGGCAGAGGCGTGTCGTACGAGGGTAGA
ACAAAGGTCTCGTTTCGAAGGAGGTCCAGGAGGAAAAGAAGACGCATCAC
TGCTGCATCACTGGGTGGAGGAATTGGATCAGTTCGCAGAAGACGAGCAG
AGGTTTATGGACAAGATGAGGTGATAAAACATTAAACATTTTTTGCATTC
CATTTAGAAGGTAAGGACACAACCCGAACCACGGGAGTACCAGGAGCATT
TCGTAACTAATTTGATCGTTTGCTCGTCCGTGTTCTCTCAAAAGACCTCG
CACGTGCGGGACCTAAATCAGCAATGTTGTATTGATGATTTCGCCTTCTG
CGCGGCAAATGCAAGAAGCATTTGGGAGCCTGAGGAAAATTCTCTTGTCC
GCGTGCAGCAATTCCCACGTCCACTCGCCGACCCTCTTCTTTTTATGCTT
CAACTGTTGCTCCTCTTCCCAAATCTGGCCGATTCATGCATGCACCAGGC
GCATCGTGAACGACTTCGTGAACGACTGGGGCGAGGCAATGCTTGGTCCT
CTCGCGGAACATTTTCTTGAGGAAACATCAACCGGCGAGGTTGCCAGTGA
AGTAGAGTCGGGACTCGATCGAGAGGGTTTGGCGGGGCTGTGGCCGCGTC
TATCGAAAATCTGCGAATCAATGCAAGGGTTGGAGGCTAGCCGCACAAAG
GTGGAGCTGGCGAGGCAGATGGTAGTTGATCAATCCAACCCCGAGAGCAT
CGCACACGCTCTAGTCAAGGTGCGGTATCTGTGCCATCGGTGTGTTTGTT
CAAGGTTTCAATGTAGCGATTTCCGCCACTTGACGCTCTCCGTGGTAACT
AGCAATTAACAATTTCCCGCGGGAAGTGTGGCCTCTACGGTGTGTCCTTT
TGGGATGGCGAACACTCGCTGCGACCGCGGTCGCTTCATTTTGGCTTTGG
TGTGCTGCAAGTGATGTATATCAGATGTCTCTCTAACTGTATAGTCCACC
GTCATCGCAGATTCAGGATCTTTTGATCGATGCAGAGGAGGAGAACGTTG
GGCTCGGCGAGGAGCTTCTGCAGGAGACGCACGGAGATCTGAACTCGTTG
GAAGATTGTTTGAATAGGTGATGATAACTCTCTACAAGGGAACGATTCGC
ATTGCACTTTCTCGAGAGCAGGGCGTGACGGAGCACCACGTCCTCACCGT
CTACGTCTTTGGTCAGACCCTCACGTTCGATGTAGTAAGGCGTTATTATT
TTAATTAGCCGTTCTTATTGTTTCCGTGGACTGGTCCCATTTCTCGCGCA
CCATCTACCATCTATCTAACAGGGCTGGCTGGAAGCTAGAAAAACTGGTG
GAGAGCTTACCGACGCTTCCGATAACATTGGAGGAAGTCGAACAAAGGAC
TGCTAAGTGGAAGGTGAGAAACAAGCGACTGCCAATCTGGGTAGGCGCGT
GATGTGATAACTCCTATTATATTAATAGTACCTTCCTACTATAGCATCTA
GCGCTTCAGTTTACCGACGAAGGTGATCAATATTGCATGATGATTCGGTT
GTATCACCGTCTCGTACCTTTCGACACCCTTTTCATGACCCGTACCTTTT
GCAGGATTTGTCTCGAAAGCATGGGGTCTTGCCGGAGCGGCTGGGTTCCA
TGCAGGCGCAGCTTAGGGTGGAGCTCGATGACCTCATCGTTGCGGAAGAG
GCCTTGCCTCTCGCCATAGAACGAGAGACCCACTGGAGAATCATGGCGGA
GCGGGCAGCAGGAGAACTTTCAGGGATACGTCGAAGGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig58194:559..2748+

>mRNA_H-elongata_contig58194.13300.1 ID=mRNA_H-elongata_contig58194.13300.1|Name=mRNA_H-elongata_contig58194.13300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig58194:559..2748+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCCTCTCATCTATACCGTGGACGCCAACGGTATCGAGCTCTTCTC
GCGTGCGGATGGCCGCCTGCGGGTGTTGGATCGCATGCTGGACCCTTCGG
AACAAGCCCTGGCGGAGAAGATGGCTCCTCTCATCTATACCGTGGACGCC
AACGGTATCGAGCTCTTCTCGCGTGCGGATGGCCGCCTGCGGGTGTTGGA
TCGCATGCTGGACCCTTCGGAACAAGCCCTGGCGGAGAAGGTAAAACGAG
TGGTTTTCCAGCTGAGGGAGGCAGAGGCGTGTCGTACGAGGGTAGAACAA
AGGTCTCGTTTCGAAGGAGGTCCAGGAGGAAAAGAAGACGCATCACTGCT
GCATCACTGGGTGGAGGAATTGGATCAGTTCGCAGAAGACGAGCAGAGGT
TTATGGACAAGATGAGGTAAAACGAGTGGTTTTCCAGCTGAGGGAGGCAG
AGGCGTGTCGTACGAGGGTAGAACAAAGGTCTCGTTTCGAAGGAGGTCCA
GGAGGAAAAGAAGACGCATCACTGCTGCATCACTGGGTGGAGGAATTGGA
TCAGTTCGCAGAAGACGAGCAGAGGTTTATGGACAAGATGAGGCGCATCG
TGAACGACTTCGTGAACGACTGGGGCGAGGCAATGCTTGGTCCTCTCGCG
GAACATTTTCTTGAGGAAACATCAACCGGCGAGGTTGCCAGTGAAGTAGA
GTCGGGACTCGATCGAGAGGGTTTGGCGGGGCTGTGGCCGCGTCTATCGA
AAATCTGCGAATCAATGCAAGGGTTGGAGGCTAGCCGCACAAAGGTGGAG
CTGGCGAGGCAGATGGTAGTTGATCAATCCAACCCCGAGAGCATCGCACA
CGCTCTAGTCAAGGCGCATCGTGAACGACTTCGTGAACGACTGGGGCGAG
GCAATGCTTGGTCCTCTCGCGGAACATTTTCTTGAGGAAACATCAACCGG
CGAGGTTGCCAGTGAAGTAGAGTCGGGACTCGATCGAGAGGGTTTGGCGG
GGCTGTGGCCGCGTCTATCGAAAATCTGCGAATCAATGCAAGGGTTGGAG
GCTAGCCGCACAAAGGTGGAGCTGGCGAGGCAGATGGTAGTTGATCAATC
CAACCCCGAGAGCATCGCACACGCTCTAGTCAAGATTCAGGATCTTTTGA
TCGATGCAGAGGAGGAGAACGTTGGGCTCGGCGAGGAGCTTCTGCAGGAG
ACGCACGGAGATCTGAACTCGTTGGAAGATTGTTTGAATAGATTCAGGAT
CTTTTGATCGATGCAGAGGAGGAGAACGTTGGGCTCGGCGAGGAGCTTCT
GCAGGAGACGCACGGAGATCTGAACTCGTTGGAAGATTGTTTGAATAGGG
CTGGCTGGAAGCTAGAAAAACTGGTGGAGAGCTTACCGACGCTTCCGATA
ACATTGGAGGAAGTCGAACAAAGGACTGCTAAGTGGAAGGGCTGGCTGGA
AGCTAGAAAAACTGGTGGAGAGCTTACCGACGCTTCCGATAACATTGGAG
GAAGTCGAACAAAGGACTGCTAAGTGGAAGGATTTGTCTCGAAAGCATGG
GGTCTTGCCGGAGCGGCTGGGTTCCATGCAGGCGCAGCTTAGGGTGGAGC
TCGATGACCTCATCGTTGCGGAAGAGGCCTTGCCTCTCGCCATAGAACGA
GAGACCCACTGGAGAATCATGGCGGAGCGGGCAGCAGGAGAACTTTCAGG
GATACGTCGAAGGTCCGATTTGTCTCGAAAGCATGGGGTCTTGCCGGAGC
GGCTGGGTTCCATGCAGGCGCAGCTTAGGGTGGAGCTCGATGACCTCATC
GTTGCGGAAGAGGCCTTGCCTCTCGCCATAGAACGAGAGACCCACTGGAG
AATCATGGCGGAGCGGGCAGCAGGAGAACTTTCAGGGATACGTCGAAGGT
CC
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