mRNA_H-elongata_contig58191.13299.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58191.13299.1 vs. uniprot
Match: D7FKH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH6_ECTSI) HSP 1 Score: 298 bits (763), Expect = 5.090e-93 Identity = 163/242 (67.36%), Postives = 193/242 (79.75%), Query Frame = 3
Query: 3 VYRAVYKGEENASFASTLHNLGMTFRAMAEESSKLERIPLLERGAEAFSRCVQIREKTLTNNHPDLQLARSRLAMIQSLLGG-EKEETEAKLRAALDGLQMAVGDDNASTANAMTNLALFLKGEGQYEEATNLFTAALDTRLELYGPKHVDALVSMHNLSMVHHAAGREDEAVELQEEIARIGEELGMTEEERVEAGDVSTERMNEDLDVTREDGKR-PGKEIDQKQEEGNNVGDSTTTWRP 722
VYRAVYKGEENASFASTLHNLGM FRAMAE+S KLE+IPL+ER AE+F RCVQIREK LTNNHPDLQLARSRLA +Q +LGG EKE TEA+LRAALDGLQMAVG+D+ASTANA TNLALFLKGEG+ EAT+L+T L+TR +LYG KH D LVSMHNLSM HH AGREDEA++L++EIA+IGEE+GMT EE+ EA + + + +E+GK+ P K+ DS +TW+P
Sbjct: 205 VYRAVYKGEENASFASTLHNLGMLFRAMAEDSKKLEKIPLMERAAESFERCVQIREKILTNNHPDLQLARSRLATVQDMLGGGEKEGTEARLRAALDGLQMAVGNDDASTANAKTNLALFLKGEGKLAEATDLYTDVLETRKKLYGRKHFDVLVSMHNLSMTHHVAGREDEAIKLRDEIAKIGEEMGMTPEEQSEASGAAGGAVK----LAQEEGKKAPEKK----------KNDSGSTWKP 432
BLAST of mRNA_H-elongata_contig58191.13299.1 vs. uniprot
Match: W4GGN5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGN5_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.110e-18 Identity = 59/177 (33.33%), Postives = 94/177 (53.11%), Query Frame = 3
Query: 15 VYK---GEENASFASTLHNLGMTFRAMAEESSKLERIPLLERGAEAFSRCVQIREKTLTNNHPDLQLARSRLAMIQSLLGGEKEETEAKLRAALDGLQMAVGDDNASTANAMTNLALFLKGEGQYEEATNLFTAALDTRLELYGPKHVDALVSMHNLSMVHHAAGREDEAVELQEEI 536
VYK GE +AS+A+TLHNLG +R A S ++++ ++ E F +++R L +HPD+ ++ + M+ +K + E L A + L+ VG + TA A NL + K G+++ A LF A R G HV+ + +MHN + A GRED+A +Q+EI
Sbjct: 124 VYKSCVGENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFEESLRVRRDILAPDHPDIAISMCNVGMLYWHTH-KKAKAEEILVEAAERLESKVGPTSPLTALAWNNLGIVYKELGKFDAAVELFAKATAVRKASLGDMHVETITTMHNWAEALRAGGREDDAAVIQKEI 299
BLAST of mRNA_H-elongata_contig58191.13299.1 vs. uniprot
Match: M4BVV7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVV7_HYAAE) HSP 1 Score: 68.2 bits (165), Expect = 1.580e-9 Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 3
Query: 24 GEENASFASTLHNLGMTFRAMAEESSKLERIPLLERGAEAFSRCVQIREKTLTNNHPDLQLARSRLAMIQSLLGGEKEETEAKLRAALDGLQMAVGDDNASTANAMTNLA 353
GE++ASFA+TL+NLG+ +RA+A SS L+R+ L R + ++IR + L HPD+ L+ S L ++ + ++ A L A++ L+ G ++ TA NLA
Sbjct: 23 GEQHASFATTLYNLGLVYRALALASSSLDRVTALHRALDCIQESLKIRREILEPGHPDIALSLSNLGVLY-WQNKQPDKAFAVLAEAVEMLERKTGPESVLTALVKNNLA 131
BLAST of mRNA_H-elongata_contig58191.13299.1 vs. uniprot
Match: A0A397DE51_9STRA (EF-hand domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DE51_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.320e-9 Identity = 46/147 (31.29%), Postives = 74/147 (50.34%), Query Frame = 3
Query: 15 VYK---GEENASFASTLHNLGMTFRAMAEESSKLERIPLLERGAEAFSRCVQIREKTLTNNHPDLQLARSRLAMIQSLLGGEKEETEAKLRAALDGLQMAVGDDNASTANAMTNLALFLKGEGQYEEATNLFTAALDTRLELYGPKH 446
VYK GE +AS+A+TLHNLG +R A S ++++ ++ E F +++R L +HPD+ ++ + M+ +K + E L A + L+ VG + TA A NL + K G+++ A LF A R G H
Sbjct: 121 VYKSCVGENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFEESLRVRRDILAPDHPDIAISMCNVGMLYWHTH-KKAKAEEILVEAAERLESKVGPTSPLTALAWNNLGIVYKELGKFDAAVELFAKATAVRKASLGDMH 266
BLAST of mRNA_H-elongata_contig58191.13299.1 vs. uniprot
Match: A0A485LCH3_9STRA (Aste57867_19411 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCH3_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 3.870e-8 Identity = 49/181 (27.07%), Postives = 83/181 (45.86%), Query Frame = 3
Query: 3 VYRAVYKGEENASFASTLHNLGMTFRAMAEESSKLERIPLLERGAEAFSRCVQIREKTLTNNHPDLQLARSRLAMIQSLLGGEKEETEAKLRAALDGLQMAVGDDNASTANAMTNLALFLKGEGQYEEATNLFTAALDTRLELYGPKHVDALVSMHNLSMVHHAAGREDEAVELQEEIARI 545
VY+A GE +AS+A+TLHNLG R + + +++I L+ E F +++R L +HPD+ ++ + ++ +K + E L A++ L+ VG + TA A V+ + +MHNL+ AAGR+DEA ++QE I +
Sbjct: 130 VYKACV-GENHASWATTLHNLGGVHRLHSHALTGMKKIESLDLALECFEESLRVRRDILAADHPDIAISMCNVGILYWHTH-KKAKAEDMLVDAVERLEAKVGPSSPLTALAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETITTMHNLAETLRAAGRDDEATKIQEAILEL 308
BLAST of mRNA_H-elongata_contig58191.13299.1 vs. uniprot
Match: A0A024UG34_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG34_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 6.900e-6 Identity = 45/177 (25.42%), Postives = 77/177 (43.50%), Query Frame = 3
Query: 15 VYK---GEENASFASTLHNLGMTFRAMAEESSKLERIPLLERGAEAFSRCVQIREKTLTNNHPDLQLARSRLAMIQSLLGGEKEETEAKLRAALDGLQMAVGDDNASTANAMTNLALFLKGEGQYEEATNLFTAALDTRLELYGPKHVDALVSMHNLSMVHHAAGREDEAVELQEEI 536
VYK GE +AS+A+TLHNLG +R A S ++++ L+ E F +++R + L +HPD+ ++ + M+ +KE+ E L A++ L+ VG + +MHN + A+GR+D+A E+Q+ I
Sbjct: 123 VYKSCVGENHASWATTLHNLGGVYRLQAHSLSGMKKVEGLDHALECFEESLRVRREILAADHPDIAMSMCNVGMLYWHTH-KKEKAEEMLVEAVERLEAKVGATSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTMHNWAEALRASGRDDDAAEIQKTI 298 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58191.13299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58191.13299.1 >prot_H-elongata_contig58191.13299.1 ID=prot_H-elongata_contig58191.13299.1|Name=mRNA_H-elongata_contig58191.13299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp MTFRAMAEESSKLERIPLLERGAEAFSRCVQIREKTLTNNHPDLQLARSRback to top mRNA from alignment at H-elongata_contig58191:61..2806- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58191.13299.1 ID=mRNA_H-elongata_contig58191.13299.1|Name=mRNA_H-elongata_contig58191.13299.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2746bp|location=Sequence derived from alignment at H-elongata_contig58191:61..2806- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58191:61..2806- >mRNA_H-elongata_contig58191.13299.1 ID=mRNA_H-elongata_contig58191.13299.1|Name=mRNA_H-elongata_contig58191.13299.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig58191:61..2806- (Himanthalia elongata Himel1 dioecious)back to top |