mRNA_H-elongata_contig5818.13295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5818.13295.1
Unique NamemRNA_H-elongata_contig5818.13295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5818.13295.1 vs. uniprot
Match: D7FVY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVY0_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.420e-60
Identity = 158/377 (41.91%), Postives = 198/377 (52.52%), Query Frame = 1 
Query:    1 RSQPIHVDSRSLVDLKAVVYEKEQKVKVDGRGGF--SGGGLRALXXXXXXXXXXGGGSARKDPFAKKNRGVEDRSHRDELERVTESSKKKAAERRLAAKSSLYEKMAKGEVD-SSRAESLVDFSRKTGSDLALLDA--------RREKRGRDRDGTRQDGDDNYEVEDID------------------------------------------GVEVTIVDEFGRDRSVTRGSAVHRVYLEAKRATKEREAQEQAESES--------------YDERYSYRGNKGTAAPAPVG-----------------------------SAGKWAWSSGTGRGADEGDFETREGQDRRANKKMKKLLEEEGGFEKVTEESGAKVR 843
            +S+PI VD RSLVDLKA+VY KEQK K++G GG   + GGLR L          GG  ARKDPFA+ NRGVEDRS RDE+ERVT S+K+KA +R +AAKSSLYEK+AKGE+  ++RA SLVDFSRKTG DLALL+A        R +  G+      + GD                                                   G EV IVDEFGR R+VTRG   HR +L+A++   E E++ +   ++              +D+RYSYRGN G                                     +AG WAWSSG GRGADEGDFETREG++RRA K M +LL  E G  K  +++GAK+R
Sbjct:   15 KSKPIKVDGRSLVDLKAIVYAKEQKAKLEGGGGSGSASGGLRGLRGKRSSGDRDGG--ARKDPFARSNRGVEDRSQRDEIERVTASTKRKAGQRVMAAKSSLYEKLAKGEIGGATRAGSLVDFSRKTGDDLALLEAKAVEPRKLRHKDDGKPGSSASEAGDSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGGEVEIVDEFGRHRTVTRGGREHREHLKARKRAAEIESERREFEQNAXXXXXXXXXXQANFDDRYSYRGNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDGPTAGGWAWSSGAGRGADEGDFETREGEERRAKKGMAELLGREAGG-KGDDDAGAKIR 388
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BLAST of mRNA_H-elongata_contig5818.13295.1 vs. uniprot
Match: A0A1V9ZLH9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZLH9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.630e-9
Identity = 60/192 (31.25%), Postives = 93/192 (48.44%), Query Frame = 1 
Query:    1 RSQPIHVDSRSLVDLKAVVYEKEQKVKVDGRGGFSGGGLRALXXXXXXXXXXGGGSARKDPFAKKNRGVEDRSHRDELERVT---ESSKKKAAERRLAAKSSLYEKMAKGEVDSSRAESLVDFSRKTGSDLALLDARREKRGRDRDGTRQDGDDNYEVEDIDGVEVTIVDEFGRDRSVTRGSAVHRVYLEAK 567
            +++PI VDS+SLVDLKA+V+ ++++ K          GLR            G  S         N G+E R  RDE +++    E +KKK +   L  K+ +Y++MA+GE  +S  + LV+F+ KT                 RD    +       ED D VE+T  DEFGR + +++ S  ++ YL  K
Sbjct:   15 KAKPIKVDSKSLVDLKAIVFHEQERKKATSEST----GLR---------YKRGARSKASSTKNDVNAGIEKRRQRDEEDKLLGDDEKAKKKRSRHMLIEKAKIYDQMARGERPASSQDLLVNFNTKTNH---------------RDHEFTETSKKQTQEDDDSVEIT--DEFGRTKKISKKSDEYQAYLREK 176
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BLAST of mRNA_H-elongata_contig5818.13295.1 vs. uniprot
Match: A0A8K1C3M6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3M6_PYTOL)

HSP 1 Score: 56.2 bits (134), Expect = 1.750e-5
Identity = 67/219 (30.59%), Postives = 98/219 (44.75%), Query Frame = 1 
Query:    1 RSQPIHVDSRSLVDLKAVVYEKEQKVK----------------VDGRGGFSGGGLRALXXXXXXXXXXGGGSARKDPFAKKNRGVEDRSHRDELER---VTESSKKKAAERR----LAAKSSLYEKMAKGEVDSSR----------AESLVDFSRKTGSDLALLDARREKRGRDRDGTRQDGDDNYEVEDIDGVEVTIVDEFGRDRSVTRGSAVHRVYL 558
            +++ I VDS+SL+DLKAVVY+KEQ+ +                  GRG ++   L+A           GG +         NRGV+ R  RDE E+   V + +   A +R+    L  K+ LYE M +G+    R          AESLVDF  K  S +A+ ++    R ++               D+    V I DEFGR R V +GS  +  Y+
Sbjct:   15 KAKEIKVDSKSLLDLKAVVYKKEQERRERQRRLKEALHQEEEEAPGRGKYAR--LKAKKRKGSDEDRLGGTA---------NRGVDKRRKRDESEKELDVDDDADDAALQRKSREMLEKKARLYEAMMQGKTMEDREGNGMSAAAMAESLVDFDEKKRSGMAMKESALWSRSKN---------------DM----VEIADEFGRSRLVEKGSKEYEEYM 203
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BLAST of mRNA_H-elongata_contig5818.13295.1 vs. uniprot
Match: A0A1V9YWT8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWT8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.240e-5
Identity = 56/179 (31.28%), Postives = 87/179 (48.60%), Query Frame = 1 
Query:    1 RSQPIHVDSRSLVDLKAVVYEKEQKVKVDGRGGFSGGGLRALXXXXXXXXXXGGGSARKDPFAKKNRGVEDRSHRDE----LERVTESSKKKAAERRLAAKSSLYEKMAKGEVDSSRAESLVDFSRKTGSDLALLDARREKRGRDRDGTRQDGDDNYEVEDIDGVEVTIVDEFGRDRSV 525
            +++ I +DS+SLVDLKA+V+ ++++ K D        GLR+            G  A++    + N G+E R  RDE    L    E +KKK +   L  K+ LY+++A+GE  +S A  L++F  KT        A R+    +      +GDD  E+          VDEFGR + V
Sbjct:   15 KAKAIKIDSKSLVDLKALVFREQERKKAD----IDALGLRSKR----------GARAKESGKKESNAGIEKRRQRDEEAEELLGDDERAKKKRSRAALIEKAKLYDQIARGERPASGAH-LINFDEKT--------AHRDHEFNEAPVLNPEGDDMVEI----------VDEFGRTKRV 160
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BLAST of mRNA_H-elongata_contig5818.13295.1 vs. uniprot
Match: A0A662WGR2_9STRA (Uncharacterized protein n=3 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGR2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.530e-5
Identity = 69/213 (32.39%), Postives = 95/213 (44.60%), Query Frame = 1 
Query:    1 RSQPIHVDSRSLVDLKAVVYEKEQK--------VKVDGRGGFSG---GGLRALXXXXXXXXXXGGGSA----RKDPFAKK---NRGVEDRSHRDE----LERVTESSKK---KAAERRLAAKSSLYEKMAKGEVDSSRAES--LVDFSRKTGSDLALLDARREKRGRDRDGTRQDGDDNYEVEDIDGVEVTIVDEFGRDRSVTRGSAVHRVYL 558
            +++PI VD++SLVDLKAVV++K+Q+        +  D  GG SG   G    L          G  S+    R +  A +   NRGVE R+ RDE    LE   E   +   K +   L  K+ LYE+MA+GE  S++A    LVDF  K  S                           E +  + VE+T  DEFGR R V   S  +  +L
Sbjct:   15 KAKPIQVDAKSLVDLKAVVFQKDQERQRRLRDALTADDEGGHSGRRLGKYAHLRGGNKSRKRLGASSSSALSRDEERAGRSFCNRGVEARNRRDEEAQELETPDEDDDRAWHKRSTEMLRKKARLYEEMARGEGASAQASGDFLVDFEAKRSSTAG-----------------------GETKQTELVEIT--DEFGRSRRVATDSEEYTAFL 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5818.13295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVY0_ECTSI1.420e-6041.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9ZLH9_9STRA2.630e-931.25Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A8K1C3M6_PYTOL1.750e-530.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YWT8_9STRA2.240e-531.28Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A662WGR2_9STRA3.530e-532.39Uncharacterized protein n=3 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5818contigH-elongata_contig5818:2433..4209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue1.8e-52
Seed eggNOG ortholog2880.D7FVY0
EggNOG OGs2CZ35@1,2S85D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002570.1
Exons2
Model size843
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.7046359-CDS-H-elongata_contig5818:2432..27451622930943.7046359-CDS-H-elongata_contig5818:2432..2745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 2433..2745 +
1691679634.8296297-CDS-H-elongata_contig5818:2432..27451691679634.8296297-CDS-H-elongata_contig5818:2432..2745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 2433..2745 +
1622930943.7386136-CDS-H-elongata_contig5818:3679..42091622930943.7386136-CDS-H-elongata_contig5818:3679..4209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 3680..4209 +
1691679634.8412876-CDS-H-elongata_contig5818:3679..42091691679634.8412876-CDS-H-elongata_contig5818:3679..4209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5818 3680..4209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5818.13295.1prot_H-elongata_contig5818.13295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5818 2433..4209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5818.13295.1

>prot_H-elongata_contig5818.13295.1 ID=prot_H-elongata_contig5818.13295.1|Name=mRNA_H-elongata_contig5818.13295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
RSQPIHVDSRSLVDLKAVVYEKEQKVKVDGRGGFSGGGLRALRGKRGKSG
EAGGGSARKDPFAKKNRGVEDRSHRDELERVTESSKKKAAERRLAAKSSL
YEKMAKGEVDSSRAESLVDFSRKTGSDLALLDARREKRGRDRDGTRQDGD
DNYEVEDIDGVEVTIVDEFGRDRSVTRGSAVHRVYLEAKRATKEREAQEQ
AESESYDERYSYRGNKGTAAPAPVGSAGKWAWSSGTGRGADEGDFETREG
QDRRANKKMKKLLEEEGGFEKVTEESGAKVR
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mRNA from alignment at H-elongata_contig5818:2433..4209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5818.13295.1 ID=mRNA_H-elongata_contig5818.13295.1|Name=mRNA_H-elongata_contig5818.13295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1777bp|location=Sequence derived from alignment at H-elongata_contig5818:2433..4209+ (Himanthalia elongata Himel1 dioecious)
CGTTCCCAGCCCATTCATGTGGACAGCCGCTCTCTAGTTGACCTGAAGGC
GGTAGTCTATGAGAAGGAGCAAAAGGTCAAGGTTGACGGCCGCGGCGGGT
TTTCGGGCGGAGGTCTCCGAGCCCTGCGCGGAAAGCGAGGTAAGTCAGGC
GAGGCTGGAGGGGGCTCGGCCCGGAAAGATCCCTTCGCAAAGAAGAACCG
AGGCGTGGAGGATCGATCGCACCGCGATGAATTGGAAAGGGTGACGGAGT
CGTCTAAGAAGAAAGCCGCCGAGCGACGCCTGGCCGCGAAATCGAGTCTG
TACGAGAAAATGGGTGAGCATGAAGTCGGAGGGCGGAAAAGGGGGTCGGG
CGGGATTGGGCAGTTACACGTTGTTCACGCGACGACGGCGCGCCACCACT
GCTCTTAGGTGCGCGGCTGTTGTGCGGTCTTATTAACATTGGTCAGATCA
GGAGCTGTCAATGGATGATAATTGTTTACTCCCTCAGAGAATCCTTTAGT
CTACTCTACGCCTTCGTGGGTAAGTGGGATGAGGGATGGATGTGTAGTCG
AGTACCCTTTTTCCCGTTCGTGTATTTTCTTTATCGTAGCTACCTTCGCC
TCTTCTGAGTGGTTTTATTGGCGGCGGTGGAAATAGGGGTTCTCTCTAGA
GTGTAGTCTGGTAAGTAATTTATACTTCGTATAGTTTTATTTTATTTTAT
TATTGAAAAATACATGAAAACTCATTCCAACCCTCCGAACCTCCACACCT
TATTCGCACCCTGAGAGGTGCAGTCCAGGAGACCAACTATCGTCAGGTTA
TCTTCGTTTATTTGGAGATGTCGCTTTTTCCGAGTATCATGTATCATTGT
CGTTTCCTTTTGTACAGAATAGAGTCCACGTTCCACGACTTCTCTTCCGG
GTGATGCTTTTTTTCCTACCTTGTGACCACGGGCTGGATTTTGAGATCAG
TTTACAGTTTAGATGATAATTCACCCAATAAAAAGAAATCAGCACCAGAC
GCTAAAACTATTTTCGATCCATTATACGTGGGGGGCGCACGTATTGGAAG
GGCTATTGGTATACAGTAGCTTCACCTTGCAGTTTATACTATTAATAATA
ATAGATAAGGATTCAATAATAGGTGTTGGTGGAAATATGGAGGGGGGGAA
AGAAGGGGCACGGAAGATATAAAAATGCAAATAATCCGTGCGTTTTTCAC
AATCTCAACGGTGATAAATATCTCTGTTTCGCGCTTCTGGTCGGCAGCCA
AGGGAGAAGTGGACTCCTCCCGCGCGGAATCCCTCGTCGACTTTTCTCGA
AAGACGGGCTCCGACCTCGCGCTTCTGGACGCCAGGAGAGAGAAGCGCGG
GCGGGACCGGGACGGCACAAGACAAGACGGCGACGATAACTACGAGGTGG
AGGACATCGACGGCGTGGAGGTTACCATCGTCGACGAGTTCGGGCGCGAC
CGCTCCGTAACCCGTGGTAGCGCCGTACACCGAGTGTACCTGGAGGCGAA
GAGGGCAACAAAAGAAAGAGAGGCGCAAGAGCAAGCGGAGTCGGAGTCGT
ACGACGAGCGTTACTCGTACCGAGGCAACAAGGGAACAGCGGCTCCGGCT
CCCGTAGGGTCGGCCGGAAAGTGGGCATGGAGTTCCGGCACCGGTAGGGG
GGCGGACGAGGGCGACTTCGAGACCCGAGAAGGGCAGGACCGACGGGCGA
ATAAAAAAATGAAGAAACTGTTAGAGGAAGAGGGAGGGTTTGAGAAAGTC
ACGGAGGAGAGTGGTGCTAAGGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig5818:2433..4209+

>mRNA_H-elongata_contig5818.13295.1 ID=mRNA_H-elongata_contig5818.13295.1|Name=mRNA_H-elongata_contig5818.13295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig5818:2433..4209+ (Himanthalia elongata Himel1 dioecious)
CGTTCCCAGCCCATTCATGTGGACAGCCGCTCTCTAGTTGACCTGAAGGC
GGTAGTCTATGAGAAGGAGCAAAAGGTCAAGGTTGACGGCCGCGGCGGGT
TTTCGGGCGGAGGTCTCCGAGCCCTGCGCGGAAAGCGAGGTAAGTCAGGC
GAGGCTGGAGGGGGCTCGGCCCGGAAAGATCCCTTCGCAAAGAAGAACCG
AGGCGTGGAGGATCGATCGCACCGCGATGAATTGGAAAGGGTGACGGAGT
CGTCTAAGAAGAAAGCCGCCGAGCGACGCCTGGCCGCGAAATCGAGTCTG
TACGAGAAAATGGCGTTCCCAGCCCATTCATGTGGACAGCCGCTCTCTAG
TTGACCTGAAGGCGGTAGTCTATGAGAAGGAGCAAAAGGTCAAGGTTGAC
GGCCGCGGCGGGTTTTCGGGCGGAGGTCTCCGAGCCCTGCGCGGAAAGCG
AGGTAAGTCAGGCGAGGCTGGAGGGGGCTCGGCCCGGAAAGATCCCTTCG
CAAAGAAGAACCGAGGCGTGGAGGATCGATCGCACCGCGATGAATTGGAA
AGGGTGACGGAGTCGTCTAAGAAGAAAGCCGCCGAGCGACGCCTGGCCGC
GAAATCGAGTCTGTACGAGAAAATGGCCAAGGGAGAAGTGGACTCCTCCC
GCGCGGAATCCCTCGTCGACTTTTCTCGAAAGACGGGCTCCGACCTCGCG
CTTCTGGACGCCAGGAGAGAGAAGCGCGGGCGGGACCGGGACGGCACAAG
ACAAGACGGCGACGATAACTACGAGGTGGAGGACATCGACGGCGTGGAGG
TTACCATCGTCGACGAGTTCGGGCGCGACCGCTCCGTAACCCGTGGTAGC
GCCGTACACCGAGTGTACCTGGAGGCGAAGAGGGCAACAAAAGAAAGAGA
GGCGCAAGAGCAAGCGGAGTCGGAGTCGTACGACGAGCGTTACTCGTACC
GAGGCAACAAGGGAACAGCGGCTCCGGCTCCCGTAGGGTCGGCCGGAAAG
TGGGCATGGAGTTCCGGCACCGGTAGGGGGGCGGACGAGGGCGACTTCGA
GACCCGAGAAGGGCAGGACCGACGGGCGAATAAAAAAATGAAGAAACTGT
TAGAGGAAGAGGGAGGGTTTGAGAAAGTCACGGAGGAGAGTGGTGCTAAG
GTGAGGCCAAGGGAGAAGTGGACTCCTCCCGCGCGGAATCCCTCGTCGAC
TTTTCTCGAAAGACGGGCTCCGACCTCGCGCTTCTGGACGCCAGGAGAGA
GAAGCGCGGGCGGGACCGGGACGGCACAAGACAAGACGGCGACGATAACT
ACGAGGTGGAGGACATCGACGGCGTGGAGGTTACCATCGTCGACGAGTTC
GGGCGCGACCGCTCCGTAACCCGTGGTAGCGCCGTACACCGAGTGTACCT
GGAGGCGAAGAGGGCAACAAAAGAAAGAGAGGCGCAAGAGCAAGCGGAGT
CGGAGTCGTACGACGAGCGTTACTCGTACCGAGGCAACAAGGGAACAGCG
GCTCCGGCTCCCGTAGGGTCGGCCGGAAAGTGGGCATGGAGTTCCGGCAC
CGGTAGGGGGGCGGACGAGGGCGACTTCGAGACCCGAGAAGGGCAGGACC
GACGGGCGAATAAAAAAATGAAGAAACTGTTAGAGGAAGAGGGAGGGTTT
GAGAAAGTCACGGAGGAGAGTGGTGCTAAGGTGAGG
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