mRNA_H-elongata_contig58128.13291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58128.13291.1
Unique NamemRNA_H-elongata_contig58128.13291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: D7FWX4_ECTSI (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX4_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 3.970e-104
Identity = 180/238 (75.63%), Postives = 194/238 (81.51%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSS-GDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDS------GGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQGLRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            QVRPFSEKEK  G  CVISM  +QTKILDPAFFDSE+G+SS  DRSMWERTFNFDHSFWSHSS G G GG  F       SSQADV++ALG FL+DNAC+GFNCSLFAYGQTGSGKTYTMLGDSSDLTSA G GTAGLIPR+CV LF+RFGLS+S      G      + +GQASIQVSFCEIYNEQVRDLF EGG G GLRVREHPT+GAFVEGLSAR V  YQQVQ LLEDGMS+R
Sbjct:    5 QVRPFSEKEKLAGKRCVISMAANQTKILDPAFFDSEDGSSSPGDRSMWERTFNFDHSFWSHSSAGRGLGGGRF-------SSQADVHQALGIFLLDNACRGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAAGEGTAGLIPRICVELFERFGLSNSREADCRGAAENAFRKSGQASIQVSFCEIYNEQVRDLFAEGGSGHGLRVREHPTKGAFVEGLSARPVVCYQQVQQLLEDGMSAR 235          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: A0A8B6ET91_MYTGA (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6ET91_MYTGA)

HSP 1 Score: 154 bits (390), Expect = 3.940e-41
Identity = 90/233 (38.63%), Postives = 133/233 (57.08%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGD-GAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQG-LRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+++EK  G+ C+ISM G  T I +P     EN  +         + F+FDHS+WSH+  D    G +  + G  YS Q  VY  LG+ ++DNA QG+N +LFAYGQTGSGK+Y+M+G  S+          G++P +C  LF+    +D          + Q  +  S  EIYNEQVRDL  +    QG L++R++P  G +VEGL    V +Y++++ L+E G  +R
Sbjct:   11 RVRPFNQREKNAGSKCIISMSGQTTTIKNP-----ENNET---------KAFSFDHSYWSHTDFDENELGLNIAKAGSNYSDQRQVYNDLGKGVLDNAWQGYNAALFAYGQTGSGKSYSMIGYGSN---------KGIVPILCEELFKAVEQNDD--------KSKQLQVSFSMLEIYNEQVRDLLVKAKPQQGGLKIRQNPQSGFYVEGLRLVPVRNYKEIENLMEQGTVNR 212          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: C1MNZ0_MICPC (Kinesin-like protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MNZ0_MICPC)

HSP 1 Score: 151 bits (381), Expect = 1.590e-40
Identity = 95/242 (39.26%), Postives = 129/242 (53.31%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQ-----------GLRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            + RPF+ +EKQ  + CV+ MDG++T I +P      NG S          TF FDHSFWSH   D +GG    RGG  ++SQ  V+  LG  L++NA  G+N  L AYGQTGSGK+Y+M+G             AG++PR    +F R    DS            A ++V+  EIYNE+V+DL   GGGG            GL++R HPTRG +VEGL+      Y +V  L++ G  +R
Sbjct:    8 RCRPFNAREKQLSSPCVVKMDGARTTITNPV-----NGTS---------HTFEFDHSFWSH---DPSGGG---RGGPTHASQETVFDELGRDLLENAWAGYNVCLVAYGQTGSGKSYSMMGXXXXXXDH-----AGVVPRAAREIFDRMRGDDS------------ARVEVTMIEIYNERVKDLLNAGGGGGSTNPFAENGGGGLKIRTHPTRGPYVEGLTPCAARDYDEVVRLMDRGEKAR 212          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: A0A8B6EUL5_MYTGA (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EUL5_MYTGA)

HSP 1 Score: 154 bits (390), Expect = 4.710e-40
Identity = 90/233 (38.63%), Postives = 133/233 (57.08%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGD-GAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQG-LRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+++EK  G+ C+ISM G  T I +P     EN  +         + F+FDHS+WSH+  D    G +  + G  YS Q  VY  LG+ ++DNA QG+N +LFAYGQTGSGK+Y+M+G  S+          G++P +C  LF+    +D          + Q  +  S  EIYNEQVRDL  +    QG L++R++P  G +VEGL    V +Y++++ L+E G  +R
Sbjct:   11 RVRPFNQREKNAGSKCIISMSGQTTTIKNP-----ENNET---------KAFSFDHSYWSHTDFDENELGLNIAKAGSNYSDQRQVYNDLGKGVLDNAWQGYNAALFAYGQTGSGKSYSMIGYGSN---------KGIVPILCEELFKAVEQNDD--------KSKQLQVSFSMLEIYNEQVRDLLVKAKPQQGGLKIRQNPQSGFYVEGLRLVPVRNYKEIENLMEQGTVNR 212          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: A0A6J8EDJ7_MYTCO (Kinesin motor domain-containing protein n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EDJ7_MYTCO)

HSP 1 Score: 154 bits (388), Expect = 3.280e-39
Identity = 90/233 (38.63%), Postives = 133/233 (57.08%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGD-GAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQG-LRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+++EK  G+ C+ISM G  T I +P     EN  +         + F+FDHS+WSH+  D    G +  + G  YS Q  VY  LG+ ++DNA QG+N +LFAYGQTGSGK+Y+M+G  S+          G++P +C  LF+    +D          + Q  +  S  EIYNEQVRDL  +    QG L++R++P  G +VEGL    V +Y++++ L+E G  +R
Sbjct:   11 RVRPFNQREKNAGSKCIISMSGQTTTIKNP-----ENNET---------KAFSFDHSYWSHTDFDENELGLNVAKAGSNYSDQRQVYNDLGKGVLDNAWQGYNAALFAYGQTGSGKSYSMIGYGSN---------KGIVPILCEELFKAAEQNDD--------KSKQLQVSFSMLEIYNEQVRDLLVKAKPQQGGLKIRQNPQSGFYVEGLRLVPVRNYKEIENLMEQGTVNR 212          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: A0A6J3HFZ5_SAPAP (Kinesin-like protein n=4 Tax=Eutheria TaxID=9347 RepID=A0A6J3HFZ5_SAPAP)

HSP 1 Score: 146 bits (369), Expect = 3.730e-39
Identity = 86/231 (37.23%), Postives = 128/231 (55.41%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQGLRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+ +E    + C+I M GS T I++P            +      ++F+FD+S+WSH+S +             Y+SQ  VYR +GE ++ +A +G+N  +FAYGQTG+GK+YTM+G              G+IP++C  LF R  ++D+      S +N   S++VS+ EIY E+VRDL      G  LRVREHP  G +VE LS   V SY  +Q L++ G  +R
Sbjct:   11 RVRPFNSREMSRDSKCIIQMSGSTTTIINP------------KQPKETPKSFSFDYSYWSHTSPEDIN----------YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK-------DQQGIIPQLCEDLFSR--INDT------SNDNMSYSVEVSYMEIYCERVRDLLNPKNKGN-LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKAR 203          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: U4LC25_PYROM (Similar to Kinesin-like protein KIF1A acc. no. Q12756 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LC25_PYROM)

HSP 1 Score: 152 bits (383), Expect = 1.660e-38
Identity = 84/231 (36.36%), Postives = 138/231 (59.74%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQGLRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+ +EK+ GA C++ M  +QT +  PA  +++ GA     ++   + FNFD S+WS           F++    Y+ Q ++Y+ LGE L+DNA  G+N  +FAYGQTGSGK+Y+M+G   +          G+IP++C  +F+R  ++    DP     + + +++VS+ EIYNE+VRDL        GL+VREHP+ G +VE L+   V S+ +++ L+++G  +R
Sbjct:   13 RVRPFNSREKERGAKCIVQMKDTQTVLTPPAGSENKAGAKGGA-KNHGPQVFNFDRSYWS-----------FSKNDPTYAGQDNLYQDLGEPLLDNAFGGYNNCIFAYGQTGSGKSYSMMGYGEEY---------GVIPKICQNMFERINVAQK--DP-----HLKCTVEVSYLEIYNERVRDLLNPSTKA-GLKVREHPSTGPYVEDLAKLVVGSFAEIEHLMDEGNKAR 214          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: F4PIU5_CAVFA (Kinesin-3 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PIU5_CAVFA)

HSP 1 Score: 150 bits (380), Expect = 4.030e-38
Identity = 88/234 (37.61%), Postives = 131/234 (55.98%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQA--SIQVSFCEIYNEQVRDLFY-EGGGGQGLRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+ +EK+  A C++ M G+ T ++ P    +   A  S+D    E++F FDHS+WS  S D             ++SQ  V+  LG  ++ NA +GFNCS+FAYGQTGSGK+Y+MLG   +          G+IP +C  +F R   +        S  N Q    ++VSF EIYNE+V+DL   +     GL+VR HPT G +VE LS   V S+ +++ L+++G  +R
Sbjct:   10 RVRPFNSREKERNAECIVKMSGNSTSLVRPTALRANPLAPVSQDD---EKSFTFDHSYWSFDSDDSN-----------FASQTTVFDDLGREVLQNAWEGFNCSIFAYGQTGSGKSYSMLGYGEE---------KGIIPLVCEEMFNRINNT-------VSNENEQIVFKVEVSFMEIYNERVKDLLNPKNNKPGGLKVRNHPTTGPYVEDLSKLAVKSFPEIEMLMDEGSKAR 213          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: D3B143_POLPP (Kinesin-3 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B143_POLPP)

HSP 1 Score: 150 bits (379), Expect = 5.740e-38
Identity = 87/233 (37.34%), Postives = 135/233 (57.94%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDP-AFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFY-EGGGGQGLRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+ +EK+  A C++ M+G+ T ++ P A   + N   ++ED    E++F FDHS+WS  S D             ++SQ  V+  LG  ++ NA +GFNC++FAYGQTGSGK+Y+MLG   D          G+IP +C  +F R G + S       +      ++VSF EIYNE+V+DL   +     GL+VR +P+ G +VE LS   V S+Q+++ L+++G  +R
Sbjct:   10 RVRPFNSREKERNAECIVKMNGNTTLLVRPSALRANPNAPPTAED----EKSFTFDHSYWSFDSDDPN-----------FASQTTVFDDLGREVLQNAWEGFNCTIFAYGQTGSGKSYSMLGYGED---------KGIIPLVCEEMFNRIGNTVSN-----EREQTVFKVEVSFMEIYNERVKDLLNPKNNKPGGLKVRNNPSTGPYVEDLSKLAVKSFQEIEMLMDEGSKAR 213          
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Match: F0ZAX7_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZAX7_DICPU)

HSP 1 Score: 149 bits (376), Expect = 1.460e-37
Identity = 87/233 (37.34%), Postives = 134/233 (57.51%), Query Frame = 1
Query:    1 QVRPFSEKEKQNGAHCVISMDGSQTKILDP-AFFDSENGASSSEDRSMWERTFNFDHSFWSHSSGDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQGFNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFGLSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFY-EGGGGQGLRVREHPTRGAFVEGLSARRVASYQQVQGLLEDGMSSR 693
            +VRPF+E+EK+  A  ++ M+G+ T +  P A   +     ++ED    E++F FDHS+WS           F +    ++SQA VY  LG+ ++ NA +GFNCS+FAYGQTGSGK+Y+MLG + D          G+IP +C  +F+R   +     P  S       ++VSF EIYNE+V+DL   +     GL+VR +P+ G +VE LS   V S+ ++  L+++G  +R
Sbjct:    9 RVRPFNEREKERNAELIVDMNGNSTVLTRPSALRVNPTAPPTAED----EKSFTFDHSYWS-----------FNQSDPHFASQATVYNDLGKEVLKNAWEGFNCSIFAYGQTGSGKSYSMLGYNED---------KGIIPLVCEEMFERINAT-----PASSTEQTVFKVEVSFMEIYNEKVKDLLNPKNNKPGGLKVRNNPSTGPYVEDLSKLAVKSFAEIDMLMDEGTKAR 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58128.13291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX4_ECTSI3.970e-10475.63Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
A0A8B6ET91_MYTGA3.940e-4138.63Kinesin motor domain-containing protein (Fragment)... [more]
C1MNZ0_MICPC1.590e-4039.26Kinesin-like protein (Fragment) n=1 Tax=Micromonas... [more]
A0A8B6EUL5_MYTGA4.710e-4038.63Kinesin motor domain-containing protein (Fragment)... [more]
A0A6J8EDJ7_MYTCO3.280e-3938.63Kinesin motor domain-containing protein n=3 Tax=My... [more]
A0A6J3HFZ5_SAPAP3.730e-3937.23Kinesin-like protein n=4 Tax=Eutheria TaxID=9347 R... [more]
U4LC25_PYROM1.660e-3836.36Similar to Kinesin-like protein KIF1A acc. no. Q12... [more]
F4PIU5_CAVFA4.030e-3837.61Kinesin-3 n=1 Tax=Cavenderia fasciculata (strain S... [more]
D3B143_POLPP5.740e-3837.34Kinesin-3 n=1 Tax=Polysphondylium pallidum (strain... [more]
F0ZAX7_DICPU1.460e-3737.34Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58128contigH-elongata_contig58128:1756..3147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score343.6
Seed ortholog evalue7.2e-92
Seed eggNOG ortholog2880.D7FWX4
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0245@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-09_004810.1
Exons4
Model size693
Cds size693
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58128.13291.1prot_H-elongata_contig58128.13291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58128 1756..3147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.0830076-CDS-H-elongata_contig58128:1755..18981622930943.0830076-CDS-H-elongata_contig58128:1755..1898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 1756..1898 +
1691679634.5259707-CDS-H-elongata_contig58128:1755..18981691679634.5259707-CDS-H-elongata_contig58128:1755..1898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 1756..1898 +
1622930943.1007223-CDS-H-elongata_contig58128:2216..23981622930943.1007223-CDS-H-elongata_contig58128:2216..2398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 2217..2398 +
1691679634.5385315-CDS-H-elongata_contig58128:2216..23981691679634.5385315-CDS-H-elongata_contig58128:2216..2398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 2217..2398 +
1622930943.1189706-CDS-H-elongata_contig58128:2519..27191622930943.1189706-CDS-H-elongata_contig58128:2519..2719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 2520..2719 +
1691679634.557252-CDS-H-elongata_contig58128:2519..27191691679634.557252-CDS-H-elongata_contig58128:2519..2719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 2520..2719 +
1622930943.1354551-CDS-H-elongata_contig58128:2979..31471622930943.1354551-CDS-H-elongata_contig58128:2979..3147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 2980..3147 +
1691679634.569129-CDS-H-elongata_contig58128:2979..31471691679634.569129-CDS-H-elongata_contig58128:2979..3147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58128 2980..3147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58128.13291.1

>prot_H-elongata_contig58128.13291.1 ID=prot_H-elongata_contig58128.13291.1|Name=mRNA_H-elongata_contig58128.13291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
QVRPFSEKEKQNGAHCVISMDGSQTKILDPAFFDSENGASSSEDRSMWER
TFNFDHSFWSHSSGDGAGGTDFTRGGDCYSSQADVYRALGEFLVDNACQG
FNCSLFAYGQTGSGKTYTMLGDSSDLTSAVGGGTAGLIPRMCVGLFQRFG
LSDSGGDPGCSKNNGQASIQVSFCEIYNEQVRDLFYEGGGGQGLRVREHP
TRGAFVEGLSARRVASYQQVQGLLEDGMSSR
back to top

mRNA from alignment at H-elongata_contig58128:1756..3147+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58128.13291.1 ID=mRNA_H-elongata_contig58128.13291.1|Name=mRNA_H-elongata_contig58128.13291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1392bp|location=Sequence derived from alignment at H-elongata_contig58128:1756..3147+ (Himanthalia elongata Himel1 dioecious)
CAGGTTAGACCTTTCTCTGAAAAGGAGAAACAAAACGGCGCCCATTGCGT CATCAGCATGGACGGGAGCCAGACCAAGATCTTGGATCCTGCTTTCTTCG ACTCAGAGAATGGCGCATCTAGCTCAGAAGACCGCAGCATGTGGTGAGAA TCTTGAGTAATGAATTAAACGAGTACTACTGCTACTATTATTTTAATTAC GAATATATATTAAACAATTACAGTAATGCTATTGTTTTTGGCGGCCGCCT CCCCGAACGCCGTTCATTGACGCTATGCGTGGCCGTTGGACATACGTTTT TATGCAGTATTATTGCAAACAATGTAACAGCGAAGCAATGACCCGCGAAG AAGAAAACGTGCTAATCTCTAATCTTCGGGTTATGAATCACATCTTAGAA AGGAGCGGCAAAAAACATATCCCCTTTGCCTTGGGCCGCATACAAACATC ATACATATCAGGGAGCGGACATTCAACTTCGACCATAGCTTTTGGAGCCA CTCCTCGGGAGATGGGGCCGGTGGGACCGACTTTACGAGAGGGGGTGATT GTTACAGCAGTCAGGCGGACGTATATCGTGCCCTTGGGGAATTTCTAGTC GACAACGCTTGCCAAGGCTTCAACTGTTCGCTCTTTGCATACGGTAAGAA GTGACGATGTATTATGTGTCGCCGTCTTGAAGTTGAAGTATAAGGAAGGC TAGACATGAGACGAATCCTTATTATCAGTAGATTACGAACAAATTCGGAA ATCCCCCTTTTCAGGGCAAACCGGGTCCGGTAAAACATACACCATGCTTG GAGACAGCTCAGATTTGACTTCGGCGGTCGGAGGGGGTACGGCTGGTCTC ATCCCCCGAATGTGCGTAGGGCTCTTTCAAAGATTCGGATTATCAGATTC AGGAGGAGATCCTGGATGTTCTAAGAACAACGGCCAGGCTTCCATCCAAG TCTCATTCTGCGAGGTAACACACCGCTCTGTCTGCAGTTCGCACGTACGA TGGACAGAGTAGGCTTCGAATTGCTTATACCTGACGAGTATATTTAGGGT TCCACACGACATTGCTTTACGACATGGAAAGAGAAACGCTCTGCAAAGGA ATACACGGGCGTAATCTCAAATGAGATATGACGATATATTCACAGGATAA AATCCAAACGCTTGAACCGGAGACACTACAGTCAAAACTATTTCTTCCGT CTTCCACTCCCCAATCCCGCGCAGATTTACAACGAGCAGGTCCGTGATCT ATTTTACGAAGGGGGCGGTGGGCAGGGGTTACGGGTCAGGGAGCACCCAA CGCGAGGAGCTTTTGTGGAGGGACTGTCAGCGAGACGGGTGGCATCCTAC CAGCAGGTTCAAGGTCTCCTGGAAGATGGTATGTCCTCGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig58128:1756..3147+

>mRNA_H-elongata_contig58128.13291.1 ID=mRNA_H-elongata_contig58128.13291.1|Name=mRNA_H-elongata_contig58128.13291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig58128:1756..3147+ (Himanthalia elongata Himel1 dioecious)
CAGGTTAGACCTTTCTCTGAAAAGGAGAAACAAAACGGCGCCCATTGCGT
CATCAGCATGGACGGGAGCCAGACCAAGATCTTGGATCCTGCTTTCTTCG
ACTCAGAGAATGGCGCATCTAGCTCAGAAGACCGCAGCATGTGCAGGTTA
GACCTTTCTCTGAAAAGGAGAAACAAAACGGCGCCCATTGCGTCATCAGC
ATGGACGGGAGCCAGACCAAGATCTTGGATCCTGCTTTCTTCGACTCAGA
GAATGGCGCATCTAGCTCAGAAGACCGCAGCATGTGGGAGCGGACATTCA
ACTTCGACCATAGCTTTTGGAGCCACTCCTCGGGAGATGGGGCCGGTGGG
ACCGACTTTACGAGAGGGGGTGATTGTTACAGCAGTCAGGCGGACGTATA
TCGTGCCCTTGGGGAATTTCTAGTCGACAACGCTTGCCAAGGCTTCAACT
GTTCGCTCTTTGCATACGGGAGCGGACATTCAACTTCGACCATAGCTTTT
GGAGCCACTCCTCGGGAGATGGGGCCGGTGGGACCGACTTTACGAGAGGG
GGTGATTGTTACAGCAGTCAGGCGGACGTATATCGTGCCCTTGGGGAATT
TCTAGTCGACAACGCTTGCCAAGGCTTCAACTGTTCGCTCTTTGCATACG
GGCAAACCGGGTCCGGTAAAACATACACCATGCTTGGAGACAGCTCAGAT
TTGACTTCGGCGGTCGGAGGGGGTACGGCTGGTCTCATCCCCCGAATGTG
CGTAGGGCTCTTTCAAAGATTCGGATTATCAGATTCAGGAGGAGATCCTG
GATGTTCTAAGAACAACGGCCAGGCTTCCATCCAAGTCTCATTCTGCGAG
GGCAAACCGGGTCCGGTAAAACATACACCATGCTTGGAGACAGCTCAGAT
TTGACTTCGGCGGTCGGAGGGGGTACGGCTGGTCTCATCCCCCGAATGTG
CGTAGGGCTCTTTCAAAGATTCGGATTATCAGATTCAGGAGGAGATCCTG
GATGTTCTAAGAACAACGGCCAGGCTTCCATCCAAGTCTCATTCTGCGAG
ATTTACAACGAGCAGGTCCGTGATCTATTTTACGAAGGGGGCGGTGGGCA
GGGGTTACGGGTCAGGGAGCACCCAACGCGAGGAGCTTTTGTGGAGGGAC
TGTCAGCGAGACGGGTGGCATCCTACCAGCAGGTTCAAGGTCTCCTGGAA
GATGGTATGTCCTCGAGGATTTACAACGAGCAGGTCCGTGATCTATTTTA
CGAAGGGGGCGGTGGGCAGGGGTTACGGGTCAGGGAGCACCCAACGCGAG
GAGCTTTTGTGGAGGGACTGTCAGCGAGACGGGTGGCATCCTACCAGCAG
GTTCAAGGTCTCCTGGAAGATGGTATGTCCTCGAGG
back to top