mRNA_H-elongata_contig58121.13288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58121.13288.1
Unique NamemRNA_H-elongata_contig58121.13288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58121.13288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58121contigH-elongata_contig58121:314..1736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1018
Cds size1011
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58121.13288.1prot_H-elongata_contig58121.13288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58121 319..1736 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.7866642-UTR-H-elongata_contig58121:313..3181622930942.7866642-UTR-H-elongata_contig58121:313..318Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58121 314..318 +
1691679634.4176877-UTR-H-elongata_contig58121:313..3181691679634.4176877-UTR-H-elongata_contig58121:313..318Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58121 314..318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.8073578-CDS-H-elongata_contig58121:318..5001622930942.8073578-CDS-H-elongata_contig58121:318..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 319..500 +
1691679634.429068-CDS-H-elongata_contig58121:318..5001691679634.429068-CDS-H-elongata_contig58121:318..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 319..500 +
1622930942.8279912-CDS-H-elongata_contig58121:898..13081622930942.8279912-CDS-H-elongata_contig58121:898..1308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 899..1308 +
1691679634.4385502-CDS-H-elongata_contig58121:898..13081691679634.4385502-CDS-H-elongata_contig58121:898..1308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 899..1308 +
1622930942.8423066-CDS-H-elongata_contig58121:1317..17361622930942.8423066-CDS-H-elongata_contig58121:1317..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 1318..1736 +
1691679634.4485347-CDS-H-elongata_contig58121:1317..17361691679634.4485347-CDS-H-elongata_contig58121:1317..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 1318..1736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58121.13288.1

>prot_H-elongata_contig58121.13288.1 ID=prot_H-elongata_contig58121.13288.1|Name=mRNA_H-elongata_contig58121.13288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=337bp
MVDGTPPHSGTPSRMVIKGDWGSLPVDETPISISRSSSSGPFPGSTRVPF
QPGEEVLQHRGVITIPLSSPNGRRACVPGTEVGGGHSSDSGSSAASSPTP
RNRVAEDQMSIIAMGRVGSGGGGAAVREYEGSPTTTMAGVAVAPPRVSVN
TRYWGWGRKQDLSQPGTSPGTTLWRPLKESNPEVDAKCAAKVERGSGGSP
VGEGNSSRVESENGSGGSRDGDGSLKSTVGSLSPPQVRVPHAVESSLSVS
GAASRDSSTDCRPSLSPTGPCGVDGSISPPAISMSARSVGRLIPQAPAHP
RRESSRYSAPWQAQDSSSKSTRGGEVGAQHGPRIPPG
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mRNA from alignment at H-elongata_contig58121:314..1736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58121.13288.1 ID=mRNA_H-elongata_contig58121.13288.1|Name=mRNA_H-elongata_contig58121.13288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1423bp|location=Sequence derived from alignment at H-elongata_contig58121:314..1736+ (Himanthalia elongata Himel1 dioecious)
AGCTGATGGTGGACGGCACGCCGCCGCACTCGGGGACACCCAGTCGGATG
GTGATAAAGGGAGATTGGGGCAGCCTCCCCGTGGACGAAACGCCCATCTC
GATCTCGCGGTCGTCTTCATCGGGACCTTTCCCGGGTAGTACGAGAGTAC
CGTTTCAGCCCGGCGAGGAAGTTCTGCAGCACCGCGGGTGGGTGTAATCC
CCCCCCCCCCGTTTTCCATTTGCTTGTTGCTGCTGCTGCTGATATTGTTG
ATACTGTCATTGACGTATTCTGCGATGCATGACGAGCTTCGTCGCCTTCT
AAGGCCTGGTCTCTCTCGAAAAAGACAGCGTAAAATATGTACTGCAATAT
AACTTGCTAACGCACAGTGTGCATTTTTTTTGTGCCAGATGCAGCTTTCA
TACCCGCCGTCGCAATCTAAAATCGAAACCACAACCGCAGACGAAGGGAA
ATAGCATTCTCGCCGCCCCCTAGGGTATATTATGTACCCCAAACCAAGCG
TTCGTCAAATAACAACCGTTCCGCCTTCCCTTACACCTTCCCCTTCTTTT
GCTTTCCCAACCCCCCATTCCTCTCTTCCAAGCAGCGTGATCACCATACC
CCTTAGCTCTCCCAATGGGCGCCGGGCATGCGTCCCCGGGACCGAGGTCG
GGGGGGGACACTCCAGTGACAGCGGCAGCTCCGCGGCATCTTCCCCCACG
CCGCGCAACCGCGTCGCTGAAGACCAGATGAGCATCATCGCGATGGGGCG
TGTGGGTAGCGGTGGTGGCGGCGCAGCGGTGAGGGAGTACGAAGGATCGC
CTACCACGACTATGGCAGGGGTCGCCGTCGCCCCGCCCCGAGTCTCTGTC
AATACCAGGTACTGGGGCTGGGGAAGGAAGCAAGACCTCTCTCAACCGGG
AACTTCTCCGGGGACTACGCTCTGGCGACCGCTGAAGGAAAGCAATCCAG
AGGTGGATGCGAAATGTGCGGCGAAAGTGGAGCGAGGCAGCGGAGGTTCC
GGAGGGTCCCCAGTTGGAGAAGGAAACTCCTCCCGTGTCGAAAGCGAAAA
CGGAAGTGGAGGAAGTCGCGATGGTGACGGGAGCCTAAAATCAACCGTTG
GGAGCCTATCGCCCCCGCAGGTTCGCGTCCCACACGCTGTTGAATCATCA
CTCTCTGTCTCCGGAGCTGCATCGCGCGACTCTTCCACCGACTGCCGCCC
CTCCCTGTCCCCGACGGGACCCTGCGGTGTGGATGGAAGCATATCTCCGC
CGGCGATATCGATGTCCGCGAGAAGCGTAGGGAGACTGATCCCGCAGGCG
CCGGCGCACCCTCGCCGAGAAAGCTCTCGGTATTCTGCTCCTTGGCAAGC
TCAGGATTCATCTTCGAAGAGTACCCGCGGCGGCGAGGTCGGGGCTCAGC
ACGGCCCGCGAATCCCGCCGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig58121:314..1736+

>mRNA_H-elongata_contig58121.13288.1 ID=mRNA_H-elongata_contig58121.13288.1|Name=mRNA_H-elongata_contig58121.13288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2022bp|location=Sequence derived from alignment at H-elongata_contig58121:314..1736+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGACGGCACGCCGCCGCACTCGGGGACACCCAGTCGGATGGTGAT
AAAGGGAGATTGGGGCAGCCTCCCCGTGGACGAAACGCCCATCTCGATCT
CGCGGTCGTCTTCATCGGGACCTTTCCCGGGTAGTACGAGAGTACCGTTT
CAGCCCGGCGAGGAAGTTCTGCAGCACCGCGGATGGTGGACGGCACGCCG
CCGCACTCGGGGACACCCAGTCGGATGGTGATAAAGGGAGATTGGGGCAG
CCTCCCCGTGGACGAAACGCCCATCTCGATCTCGCGGTCGTCTTCATCGG
GACCTTTCCCGGGTAGTACGAGAGTACCGTTTCAGCCCGGCGAGGAAGTT
CTGCAGCACCGCGGCGTGATCACCATACCCCTTAGCTCTCCCAATGGGCG
CCGGGCATGCGTCCCCGGGACCGAGGTCGGGGGGGGACACTCCAGTGACA
GCGGCAGCTCCGCGGCATCTTCCCCCACGCCGCGCAACCGCGTCGCTGAA
GACCAGATGAGCATCATCGCGATGGGGCGTGTGGGTAGCGGTGGTGGCGG
CGCAGCGGTGAGGGAGTACGAAGGATCGCCTACCACGACTATGGCAGGGG
TCGCCGTCGCCCCGCCCCGAGTCTCTGTCAATACCAGGTACTGGGGCTGG
GGAAGGAAGCAAGACCTCTCTCAACCGGGAACTTCTCCGGGGACTACGCT
CTGGCGACCGCTGAAGGAAAGCAATCCAGAGGTGGATGCGAAATGTGCGG
CGAAAGTGGAGCGAGGCAGCGGAGCGTGATCACCATACCCCTTAGCTCTC
CCAATGGGCGCCGGGCATGCGTCCCCGGGACCGAGGTCGGGGGGGGACAC
TCCAGTGACAGCGGCAGCTCCGCGGCATCTTCCCCCACGCCGCGCAACCG
CGTCGCTGAAGACCAGATGAGCATCATCGCGATGGGGCGTGTGGGTAGCG
GTGGTGGCGGCGCAGCGGTGAGGGAGTACGAAGGATCGCCTACCACGACT
ATGGCAGGGGTCGCCGTCGCCCCGCCCCGAGTCTCTGTCAATACCAGGTA
CTGGGGCTGGGGAAGGAAGCAAGACCTCTCTCAACCGGGAACTTCTCCGG
GGACTACGCTCTGGCGACCGCTGAAGGAAAGCAATCCAGAGGTGGATGCG
AAATGTGCGGCGAAAGTGGAGCGAGGCAGCGGAGGGTCCCCAGTTGGAGA
AGGAAACTCCTCCCGTGTCGAAAGCGAAAACGGAAGTGGAGGAAGTCGCG
ATGGTGACGGGAGCCTAAAATCAACCGTTGGGAGCCTATCGCCCCCGCAG
GTTCGCGTCCCACACGCTGTTGAATCATCACTCTCTGTCTCCGGAGCTGC
ATCGCGCGACTCTTCCACCGACTGCCGCCCCTCCCTGTCCCCGACGGGAC
CCTGCGGTGTGGATGGAAGCATATCTCCGCCGGCGATATCGATGTCCGCG
AGAAGCGTAGGGAGACTGATCCCGCAGGCGCCGGCGCACCCTCGCCGAGA
AAGCTCTCGGTATTCTGCTCCTTGGCAAGCTCAGGATTCATCTTCGAAGA
GTACCCGCGGCGGCGAGGTCGGGGCTCAGCACGGCCCGCGAATCCCGCCG
GGTGGTCCCCAGTTGGAGAAGGAAACTCCTCCCGTGTCGAAAGCGAAAAC
GGAAGTGGAGGAAGTCGCGATGGTGACGGGAGCCTAAAATCAACCGTTGG
GAGCCTATCGCCCCCGCAGGTTCGCGTCCCACACGCTGTTGAATCATCAC
TCTCTGTCTCCGGAGCTGCATCGCGCGACTCTTCCACCGACTGCCGCCCC
TCCCTGTCCCCGACGGGACCCTGCGGTGTGGATGGAAGCATATCTCCGCC
GGCGATATCGATGTCCGCGAGAAGCGTAGGGAGACTGATCCCGCAGGCGC
CGGCGCACCCTCGCCGAGAAAGCTCTCGGTATTCTGCTCCTTGGCAAGCT
CAGGATTCATCTTCGAAGAGTACCCGCGGCGGCGAGGTCGGGGCTCAGCA
CGGCCCGCGAATCCCGCCGGGT
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