mRNA_H-elongata_contig58093.13284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58093.13284.1
Unique NamemRNA_H-elongata_contig58093.13284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 4.790e-69
Identity = 111/222 (50.00%), Postives = 150/222 (67.57%), Query Frame = -1
Query:  298 FWRWALEHKVVDAGSSLCAPLFTHSHRIPGRHYLSDASLDAVGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLM 963
            F+RWA+EH+++ AG SL AP +    R P R YLSDAS DA+GG+CPE +VFWRY L  + A  LK ++       + INLLEL GM MTAW++  ++ D+P+   DPVL+RGDN +AV W NRCGGA+++RAC +MR+LGRLEI  +W + AKHIPG +N LADGISRWP   + + V R TN   WR+  +G  G  +   +L++   +   D TLW+LM
Sbjct: 1333 FFRWAIEHELLTAGESLNAPCYGVVKRQPKRLYLSDASFDAIGGFCPEKRVFWRYDLPLDFATELKQKAARRETCSVTINLLELVGMVMTAWVMHSLVGDRPKNNNDPVLMRGDNMAAVTWSNRCGGARDKRACLMMRMLGRLEISGEWSYEAKHIPGVKNTLADGISRWPRSELADRVQRFTNTNDWREIPLGSRGEKVCSFVLQKKNLQPRHDRTLWNLM 1554          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KVY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.420e-42
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = -1
Query:  298 LLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLM 636
            ++RGDN SAV+W+NRCGG+++RRA  LMRLLGR+EI N WCHVAKHIPG EN LADGISRW +E V  NV RLT+   WR QDIG + R   E +L+E    + +D  +WS M
Sbjct:    1 MMRGDNVSAVSWVNRCGGSRDRRAGLLMRLLGRMEIENGWCHVAKHIPGRENTLADGISRWKSEDVEVNVERLTHSNNWRMQDIGDTARETIEMILQEKLQNQRMDGLVWSRM 113          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.730e-36
Identity = 82/227 (36.12%), Postives = 124/227 (54.63%), Query Frame = -1
Query:  286 FWRWALEHKVVDAGS-SLCAPLFTHSHRIPGRHYLSDASLDAVGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLMKQTT 963
            FWR  +       G   L APL     + P R  +SDAS D +GG+C E   +WR     ++ A L+ +  +     + +N+ EL GM +TAW + +    +P   G  +L+RGDN SAV W+N+C GAK  R+ TLMR+LG LE+R++W   AKHI G  N LADGISRW  + +  N+     ++ W++Q +G    +I   +L  +  E+ L   L  + +Q +
Sbjct:  804 FWRKVMAMATGPDGIVKLEAPLLCSFLQAPSRTLVSDASGDGMGGFCLESGQWWRIDFTDDIRARLRNRVFSRD--DLSMNVFELLGMVVTAWALTVQAGVKPEYPGQSILMRGDNMSAVHWVNKCRGAKEPRSGTLMRMLGCLEMRSEWRFRAKHIKGVANTLADGISRWKHDEIASNLHSYRPDIRWQEQHLGQEALDITFAVLASSSSEDQLRTRLNDVTRQVS 1028          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.570e-32
Identity = 68/191 (35.60%), Postives = 107/191 (56.02%), Query Frame = -1
Query:  268 VGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLRENWPEEMLDETLWSLMKQTTQT*GSP 840
            +GGYC E   +WR     ++ A L+ +    +   + +N+ EL GM MTAW + +   D+P   G  VL+RGDN SAV W+N+C GAK  R+  LMR++G LE+RN+W   AKHI G  N LA+GISRW  + +   +     ++ W++Q +G    ++   +L  +  ++ L   L ++ +Q      SP
Sbjct:    1 MGGYCLETGWWWRIDFSADVRARLRNRV--CKRDDLSMNVFELLGMVMTAWALTVHAGDRPEYPGQSVLMRGDNMSAVHWVNKCRGAKEPRSGALMRMMGCLEMRNEWRFRAKHIKGLANTLANGISRWKHDEITAKLRSYRPDICWQEQHLGQEALDLTSAVLDSSSSDDQLQSRLNAVTRQVEIDTSSP 189          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5L2H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.620e-28
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = -1
Query:  346 FWRYALDPNLAASLKTQSENTRARKICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCG--GAKNRRACTLMRLLGRLEIRNKWCHVAKHIPGAENVLADGISRWPAERVHENVTRLTNELGWRQQDIGPSGRNIFEHLLR 810
            FWRY L   +        +      ICIN+LEL  M MTA+++ +   D+P  EG+ V++R DN SAV+W+ + G  G K  R   LMR++G L+    WC   +H+PG EN +ADGI+RW  E + +NV   +    W+ Q++    + +   +LR
Sbjct:    6 FWRYELPEEVQGRTIRARQKGEGDFICINVLELMTMVMTAYVMVISRGDKPEREGEAVMMRADNESAVSWVKKWGWEGKKKARIGALMRMMGALKTIGGWCFQTRHVPGVENRVADGITRWKEEEIADNVQSESPGTRWQVQELKAEEQQLCAEILR 162          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KZM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.150e-14
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = -1
Query:  733 FWRWALEHKVVDAGSSLCAPLFTHSHRIPGRHYLSDASLDAVGGYCPEIKVFWRYALDPNLAASLKTQSENTRARKI 963
            FW+WAL   +   G SL A    H  R P R +LSDAS  A+GGYCPE+K+FWRY +D +L+A LK +++      I
Sbjct:  416 FWKWALNQPLALRGESLSASFLLHVKRAPSRLHLSDASFTAIGGYCPELKIFWRYTIDSSLSAELKPKAQEKETSDI 492          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5K7E5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.510e-13
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = -1
Query:  487 ICINLLELAGMCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNKW-CHVAKHIPGA 735
            + IN+LEL GM M AW++ +    QP E GD V LRGDN +A AWI RC G    R+  L+RLLG LE+ + W  H    + GA
Sbjct:   27 VSINVLELLGMVMGAWMLVLGRSHQPVEAGDCVRLRGDNEAATAWIERCRGGLEPRSGALVRLLGALEVASGWHFHATXMVMGA 110          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JQT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.880e-9
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = -1
Query:  541 MCMTAWLVQMVLRDQPREEGDPVLLRGDNASAVAWINRCGGAKNRRACTLMRLLG 705
            M MTAW+VQM+L+D+P EEG  VL+RGDN SAV+W  +  G   +    +MRL+G
Sbjct:    1 MFMTAWVVQMILKDRPVEEGQSVLMRGDNVSAVSWTQQVWGVARQARSLIMRLMG 55          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5JMW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.380e-8
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = -1
Query:  457 LLRGDNASAVAWINRCGGAKNRRACTLMRLLGRLEIRNK---WCHVAK--HIPGAENVLADGISR 636
            ++RGDN SAV+W+NRCGG+ +RRA  LMRLLGR+EI      W + ++   IP     L DG  R
Sbjct:    1 MMRGDNVSAVSWVNRCGGSSDRRAGLLMRLLGRMEIETDGVTWRNTSRDARIPSRTGYL-DGSQR 64          
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Match: A0A6H5KKV1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.540e-7
Identity = 44/96 (45.83%), Postives = 50/96 (52.08%), Query Frame = 2
Query:  548 SLMSVQARLFFAPPHRLIHATALALSPRRSTGSPSSRGWSRSTICTSQAVMHIPASSKRLMQIFRALVFSDCVFR--EAARLGSRA*RQNTFISGQ 829
            SL    ARL   PPH L+  TA  LSPR +T  PSS G S   ICT+ AVM++PASS RL  I R+ V   C      A    S    Q  F SGQ
Sbjct:    2 SLTMRLARLSRDPPHLLVQLTADTLSPRINTDCPSSIGLSFKIICTTHAVMNMPASSNRL--IVRSAVSFSCALHLSSADNDDSIVYLQKVFSSGQ 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58093.13284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JGT0_9PHAE4.790e-6950.00Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVY8_9PHAE4.420e-4259.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK1_9PHAE2.730e-3636.12Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI7_9PHAE3.570e-3235.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2H9_9PHAE1.620e-2836.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZM1_9PHAE1.150e-1446.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E5_9PHAE4.510e-1347.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQT6_9PHAE1.880e-952.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW9_9PHAE3.380e-849.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV1_9PHAE2.540e-745.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58093contigH-elongata_contig58093:29..1071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size963
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58093.13284.1prot_H-elongata_contig58093.13284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58093 407..910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.7122579-UTR-H-elongata_contig58093:28..1071622930941.7122579-UTR-H-elongata_contig58093:28..107Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58093 29..107 +
1691679633.8645685-UTR-H-elongata_contig58093:28..1071691679633.8645685-UTR-H-elongata_contig58093:28..107Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58093 29..107 +
1622930941.7289584-UTR-H-elongata_contig58093:187..4061622930941.7289584-UTR-H-elongata_contig58093:187..406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58093 188..406 +
1691679633.8800657-UTR-H-elongata_contig58093:187..4061691679633.8800657-UTR-H-elongata_contig58093:187..406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58093 188..406 +
1622930941.7576551-UTR-H-elongata_contig58093:910..10711622930941.7576551-UTR-H-elongata_contig58093:910..1071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58093 911..1071 +
1691679633.90297-UTR-H-elongata_contig58093:910..10711691679633.90297-UTR-H-elongata_contig58093:910..1071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58093 911..1071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.7433975-CDS-H-elongata_contig58093:406..9101622930941.7433975-CDS-H-elongata_contig58093:406..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58093 407..910 +
1691679633.8936121-CDS-H-elongata_contig58093:406..9101691679633.8936121-CDS-H-elongata_contig58093:406..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58093 407..910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58093.13284.1

>prot_H-elongata_contig58093.13284.1 ID=prot_H-elongata_contig58093.13284.1|Name=mRNA_H-elongata_contig58093.13284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
MRLQRVSSNISSGQFSRNRCSNMFLPDGPMSCWRQPSSLVSRVTFSWTRS
AGHREMPSASTFSAPGICFATWHHLLRISRRPNSLMSVQARLFFAPPHRL
IHATALALSPRRSTGSPSSRGWSRSTICTSQAVMHIPASSKRLMQIFRAL
VFSDCVFREAARLGSRA*
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mRNA from alignment at H-elongata_contig58093:29..1071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58093.13284.1 ID=mRNA_H-elongata_contig58093.13284.1|Name=mRNA_H-elongata_contig58093.13284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig58093:29..1071+ (Himanthalia elongata Himel1 dioecious)
CATTTCATTTTTGCCTCCTCCGGAGGACTTGCATGTGGTAAGCGCTTAAA CATTTCATTTTTGCCTCCTCCGGAGGACTTGCATGTGGTAAGCGCTTAAC CATTTCATTTTTGCCTCCTCCGGAGGACTTGCATGTGGTAAGCGCTTAAA CATTTCATCTTTGCCTCCTCCGGAGGACTTTCTACCTTTCACATACCAGG GGCAATCGAGGTGCCCCGCATTGAGGGCTCGCCGCTTGCCCTTCTCGAGT ACTTACGGATTCTACCGTGGATCGCACAGTCTGGGCTTGCGGGCTTTTGA AAGGTGCGGAAACGAATGCGACAGCTGCTTGTGCGCGGTAGCCCTGCTGG GCTCCCCTACGTTTGAGTGGTCTGTTTCATGAGGCTCCAGAGGGTCTCAT CTAACATCTCTTCTGGCCAGTTCTCCCGCAATAGATGCTCGAATATGTTC CTGCCGGATGGACCGATGTCCTGCTGGCGCCAACCTAGTTCGTTAGTCAG TCGCGTCACGTTCTCGTGGACGCGCTCGGCCGGCCATCGCGAGATGCCGT CTGCTAGCACGTTCTCGGCTCCGGGTATATGTTTTGCTACGTGGCACCAT TTGTTACGGATTTCCAGGCGCCCTAATAGTCTCATGAGCGTACAGGCTCG TCTATTCTTTGCACCGCCGCACCGGTTAATCCATGCCACCGCACTGGCGT TGTCTCCGCGGAGGAGCACCGGGTCTCCTTCCTCGCGGGGTTGGTCTCGC AGTACCATCTGCACGAGCCAGGCCGTCATGCACATACCGGCTAGTTCCAA GAGGTTAATGCAGATTTTTCGCGCTCTCGTGTTTTCGGATTGCGTCTTTA GAGAGGCTGCGAGGTTGGGGTCCAGGGCGTAACGCCAGAATACCTTTATC TCGGGGCAGTAGCCCCCTACCGCGTCAAGGCTCGCGTCCGACAAATAGTG TCTGCCCGGTATCCTATGTGAGTGCGTGAACAGTGGGGCGCAGAGAGATG ACCCTGCGTCTACGACCTTGTGCTCCAGAGCCCAGCGCCAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig58093:29..1071+

>mRNA_H-elongata_contig58093.13284.1 ID=mRNA_H-elongata_contig58093.13284.1|Name=mRNA_H-elongata_contig58093.13284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig58093:29..1071+ (Himanthalia elongata Himel1 dioecious)
ATGAGGCTCCAGAGGGTCTCATCTAACATCTCTTCTGGCCAGTTCTCCCG
CAATAGATGCTCGAATATGTTCCTGCCGGATGGACCGATGTCCTGCTGGC
GCCAACCTAGTTCGTTAGTCAGTCGCGTCACGTTCTCGTGGACGCGCTCG
GCCGGCCATCGCGAGATGCCGTCTGCTAGCACGTTCTCGGCTCCGGGTAT
ATGTTTTGCTACGTGGCACCATTTGTTACGGATTTCCAGGCGCCCTAATA
GTCTCATGAGCGTACAGGCTCGTCTATTCTTTGCACCGCCGCACCGGTTA
ATCCATGCCACCGCACTGGCGTTGTCTCCGCGGAGGAGCACCGGGTCTCC
TTCCTCGCGGGGTTGGTCTCGCAGTACCATCTGCACGAGCCAGGCCGTCA
TGCACATACCGGCTAGTTCCAAGAGGTTAATGCAGATTTTTCGCGCTCTC
GTGTTTTCGGATTGCGTCTTTAGAGAGGCTGCGAGGTTGGGGTCCAGGGC
GTAAATGAGGCTCCAGAGGGTCTCATCTAACATCTCTTCTGGCCAGTTCT
CCCGCAATAGATGCTCGAATATGTTCCTGCCGGATGGACCGATGTCCTGC
TGGCGCCAACCTAGTTCGTTAGTCAGTCGCGTCACGTTCTCGTGGACGCG
CTCGGCCGGCCATCGCGAGATGCCGTCTGCTAGCACGTTCTCGGCTCCGG
GTATATGTTTTGCTACGTGGCACCATTTGTTACGGATTTCCAGGCGCCCT
AATAGTCTCATGAGCGTACAGGCTCGTCTATTCTTTGCACCGCCGCACCG
GTTAATCCATGCCACCGCACTGGCGTTGTCTCCGCGGAGGAGCACCGGGT
CTCCTTCCTCGCGGGGTTGGTCTCGCAGTACCATCTGCACGAGCCAGGCC
GTCATGCACATACCGGCTAGTTCCAAGAGGTTAATGCAGATTTTTCGCGC
TCTCGTGTTTTCGGATTGCGTCTTTAGAGAGGCTGCGAGGTTGGGGTCCA
GGGCGTAA
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