mRNA_H-elongata_contig58092.13283.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58092.13283.1
Unique NamemRNA_H-elongata_contig58092.13283.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58092.13283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58092contigH-elongata_contig58092:158..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size658
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.638944-CDS-H-elongata_contig58092:157..4901622930941.638944-CDS-H-elongata_contig58092:157..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58092 158..490 +
1691679633.8344047-CDS-H-elongata_contig58092:157..4901691679633.8344047-CDS-H-elongata_contig58092:157..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58092 158..490 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.6529562-UTR-H-elongata_contig58092:490..8131622930941.6529562-UTR-H-elongata_contig58092:490..813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58092 491..813 +
1691679633.8479211-UTR-H-elongata_contig58092:490..8131691679633.8479211-UTR-H-elongata_contig58092:490..813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58092 491..813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58092.13283.1prot_H-elongata_contig58092.13283.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58092 158..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58092.13283.1

>prot_H-elongata_contig58092.13283.1 ID=prot_H-elongata_contig58092.13283.1|Name=mRNA_H-elongata_contig58092.13283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
WEALPETVKEQPPVDLWEASPETVKEQPPVDLWEALPETVKEQPLVDLWE
ASPGTGKGQSPVDLWEALPETGKGQPPVDLWEAPLKTRWDIPRQKIGKRN
RLKNNREELL*
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mRNA from alignment at H-elongata_contig58092:158..813+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58092.13283.1 ID=mRNA_H-elongata_contig58092.13283.1|Name=mRNA_H-elongata_contig58092.13283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=656bp|location=Sequence derived from alignment at H-elongata_contig58092:158..813+ (Himanthalia elongata Himel1 dioecious)
TGGGAGGCATTACCGGAGACGGTGAAGGAGCAGCCACCGGTGGATCTGTG
GGAGGCGTCACCGGAAACGGTGAAGGAGCAGCCACCGGTGGATCTGTGGG
AGGCATTACCGGAGACGGTGAAGGAGCAGCCACTGGTGGATCTGTGGGAG
GCGTCACCGGGGACGGGGAAGGGGCAGTCACCGGTGGATCTGTGGGAGGC
CTTACCGGAGACGGGGAAGGGGCAGCCACCGGTGGATCTGTGGGAAGCAC
CACTGAAAACACGGTGGGATATACCAAGGCAGAAAATAGGTAAGCGGAAT
CGCTTGAAGAATAACAGAGAGGAACTGCTGTAGAGCTTACTTGAAGAGCT
CCCTGTGAGATGCTTCGGTATTATAAAAGAAGGGGTGATATATAGCGGGA
CGCACGCGCAAAGGCAAAAGGACGCCACCCGCACCAAAACGATTACCGAC
AAATGCGCAGCGCCCTCTCACCTGTTAAAACCTCATAAGAACTCCAAGTG
TCGGAAGATAGATAGGACAGGGACGGTGAAGTTACCGGGGACGCCGTGGG
TGCAGCCACGGGAGTTCCAGACGTAGAAGACGCCTGTGGAAGAACCGGGT
CACAAATGGAAGCGGAAAGTTTTGCTTCAATCGAGAAGAGTTTGGTTTCA
ACCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig58092:158..813+

>mRNA_H-elongata_contig58092.13283.1 ID=mRNA_H-elongata_contig58092.13283.1|Name=mRNA_H-elongata_contig58092.13283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig58092:158..813+ (Himanthalia elongata Himel1 dioecious)
TGGGAGGCATTACCGGAGACGGTGAAGGAGCAGCCACCGGTGGATCTGTG
GGAGGCGTCACCGGAAACGGTGAAGGAGCAGCCACCGGTGGATCTGTGGG
AGGCATTACCGGAGACGGTGAAGGAGCAGCCACTGGTGGATCTGTGGGAG
GCGTCACCGGGGACGGGGAAGGGGCAGTCACCGGTGGATCTGTGGGAGGC
CTTACCGGAGACGGGGAAGGGGCAGCCACCGGTGGATCTGTGGGAAGCAC
CACTGAAAACACGGTGGGATATACCAAGGCAGAAAATAGGTAAGCGGAAT
CGCTTGAAGAATAACAGAGAGGAACTGCTGTAGTGGGAGGCATTACCGGA
GACGGTGAAGGAGCAGCCACCGGTGGATCTGTGGGAGGCGTCACCGGAAA
CGGTGAAGGAGCAGCCACCGGTGGATCTGTGGGAGGCATTACCGGAGACG
GTGAAGGAGCAGCCACTGGTGGATCTGTGGGAGGCGTCACCGGGGACGGG
GAAGGGGCAGTCACCGGTGGATCTGTGGGAGGCCTTACCGGAGACGGGGA
AGGGGCAGCCACCGGTGGATCTGTGGGAAGCACCACTGAAAACACGGTGG
GATATACCAAGGCAGAAAATAGGTAAGCGGAATCGCTTGAAGAATAACAG
AGAGGAACTGCTGTAG
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