mRNA_H-elongata_contig5809.13281.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5809.13281.1
Unique NamemRNA_H-elongata_contig5809.13281.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: D8LSQ9_ECTSI (Similar to kinesin-C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ9_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 9.190e-42
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            Q LRKKYWNMMEDMKGKIRV+ARCRP AQYEL ++CKRAVR +D++TVEVDGHHGAKQFVFD+VF+EEH Q  IF++TRNLVQS+LDG++
Sbjct: 1661 QSLRKKYWNMMEDMKGKIRVFARCRPLAQYELNQDCKRAVRFVDDSTVEVDGHHGAKQFVFDSVFSEEHGQAAIFEDTRNLVQSALDGFN 1750          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A6V1MSS8_HETAK (Kinesin-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSS8_HETAK)

HSP 1 Score: 134 bits (336), Expect = 5.030e-35
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            Q LRKKYWNMMEDMKGKIRVYARCRP A+YELER C++AVR +DETT+E++  HG KQFV+D VF+  + Q  +F++T+NL+QS LDGY+
Sbjct:  139 QALRKKYWNMMEDMKGKIRVYARCRPMAKYELERGCQQAVRFVDETTIEINSAHGPKQFVYDAVFSPANTQEDVFEDTKNLMQSCLDGYN 228          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A2R5GRQ6_9STRA (Kinesin-like protein KIN-14E n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRQ6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.360e-29
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            Q LRK+YWNMMEDMKGKIRV+ARCRP AQYEL+RNC + V   DE T++V  + G KQFV+D  F  +  Q  IF++T+NL+QSSLDGY+
Sbjct:  955 QKLRKEYWNMMEDMKGKIRVFARCRPMAQYELDRNCHQVVSFPDEFTLDVVSNKGPKQFVYDRCFGPDSTQDSIFEDTQNLIQSSLDGYN 1044          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A7S1U107_9STRA (Kinesin-like protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U107_9STRA)

HSP 1 Score: 113 bits (282), Expect = 8.570e-28
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            + LR+KYWNMMEDMKGKIRVYARCRPFAQYE ER   + V  +DE+T+ VD   G ++F +DNVF     Q  +F E  +L+QS+LDGY+
Sbjct:   34 KTLRRKYWNMMEDMKGKIRVYARCRPFAQYEKERGASQVVTFVDESTLAVDTSRGPREFTYDNVFAPGSTQQEVFDECSSLMQSALDGYN 123          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A7S0U2Q0_HEMAN (Kinesin-like protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U2Q0_HEMAN)

HSP 1 Score: 112 bits (280), Expect = 3.850e-27
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVD-GHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            Q LRKKY+N +EDMKGKIRVYARCRPFA+YE E+NC++AV+ +D+ + EVD G  G K+F FD VF E+  Q  IF+   +LVQS++DGY+
Sbjct:  100 QQLRKKYYNQIEDMKGKIRVYARCRPFAKYEKEKNCQQAVKFLDDMSCEVDVGKKGKKEFTFDEVFREDSRQEQIFEGVSHLVQSAVDGYN 190          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A7S2H4N7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4N7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.070e-26
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    7 LRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVD--GHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            LRKKY+N +EDMKGKIRV+ARCRP A+YELE+NC++ +R +DE  +E++  G+   K+F FD  F     Q  +F++ RNLVQS +DGY+
Sbjct:    3 LRKKYYNKIEDMKGKIRVFARCRPMAKYELEKNCEQIIRFVDEQEMEIETSGNRDNKKFTFDASFDPMSTQEAVFEDCRNLVQSCMDGYN 92          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A1V9ZIU4_9STRA (Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIU4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.880e-26
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            Q LRKKY+N +EDMKGKIRVY RCRP +  ELER C+ AVR +DE T+E+D   G K F +D VF   + Q  +F++T+NL+QS+LDGY+
Sbjct:  296 QTLRKKYYNTIEDMKGKIRVYCRCRPMSGSELERGCQSAVRFLDECTLELDTPRGPKSFAYDQVFNPANTQEQVFEDTKNLLQSALDGYN 385          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A2D4BUC0_PYTIN (Kinesin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUC0_PYTIN)

HSP 1 Score: 110 bits (275), Expect = 3.020e-26
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            Q LRKKY+N +EDMKGKIRVYARCRP +Q E ER C   VR +DE ++E+   HG K F +D VFT    Q  +F++T+NL+QS+LDGY+
Sbjct: 1158 QTLRKKYYNQIEDMKGKIRVYARCRPMSQSETERGCAPCVRFLDEFSLELKTSHGPKTFAYDQVFTPSSTQEQVFEDTKNLLQSALDGYN 1247          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: C3YQ47_BRAFL (Kinesin motor domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YQ47_BRAFL)

HSP 1 Score: 110 bits (274), Expect = 4.080e-26
Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            +VLRKKY+NM+EDMKGKIRVY R RP +  ELER   + +R  DE T++VD + G K+F FD++F EEH+Q  IF++T NL+QS++DGY+
Sbjct:  731 RVLRKKYYNMVEDMKGKIRVYCRARPLSGSELERGNVKIIRSPDEYTIQVDSNRGTKEFQFDSIFGEEHSQDKIFEDTNNLIQSAVDGYN 820          
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Match: A0A1V9YU11_9STRA (Kinesin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YU11_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.620e-26
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 QVLRKKYWNMMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQFVFDNVFTEEHNQGVIFQETRNLVQSSLDGYD 270
            Q LRKKY+N +EDMKGKIRVY RCRP +  ELER C+ AVR +DE T+E++   G K F +D VF   + Q  +F++T+NL+QS+LDGY+
Sbjct: 1014 QALRKKYYNTIEDMKGKIRVYCRCRPMSGSELERGCQSAVRFLDEYTLELETSRGPKSFAYDQVFNPSNTQDQVFEDTKNLLQSALDGYN 1103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5809.13281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSQ9_ECTSI9.190e-4277.78Similar to kinesin-C n=1 Tax=Ectocarpus siliculosu... [more]
A0A6V1MSS8_HETAK5.030e-3566.67Kinesin-like protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R5GRQ6_9STRA2.360e-2962.22Kinesin-like protein KIN-14E n=1 Tax=Hondaea ferme... [more]
A0A7S1U107_9STRA8.570e-2857.78Kinesin-like protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0U2Q0_HEMAN3.850e-2759.34Kinesin-like protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S2H4N7_9STRA2.070e-2653.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1V9ZIU4_9STRA2.880e-2656.67Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]
A0A2D4BUC0_PYTIN3.020e-2656.67Kinesin-like protein n=1 Tax=Pythium insidiosum Ta... [more]
C3YQ47_BRAFL4.080e-2656.67Kinesin motor domain-containing protein n=1 Tax=Br... [more]
A0A1V9YU11_9STRA5.620e-2655.56Kinesin n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5809contigH-elongata_contig5809:93..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue7.3e-31
Seed eggNOG ortholog2880.D8LSQ9
KEGG koko:K10406
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-15_002950.1
Exons2
Model size270
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5809.13281.1prot_H-elongata_contig5809.13281.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5809 93..515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.4627514-CDS-H-elongata_contig5809:92..2761622930941.4627514-CDS-H-elongata_contig5809:92..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5809 93..276 -
1691679633.7546341-CDS-H-elongata_contig5809:92..2761691679633.7546341-CDS-H-elongata_contig5809:92..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5809 93..276 -
1622930941.4777205-CDS-H-elongata_contig5809:456..5151622930941.4777205-CDS-H-elongata_contig5809:456..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5809 457..515 -
1691679633.765367-CDS-H-elongata_contig5809:456..5151691679633.765367-CDS-H-elongata_contig5809:456..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5809 457..515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.4931588-UTR-H-elongata_contig5809:515..5421622930941.4931588-UTR-H-elongata_contig5809:515..542Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5809 516..542 -
1691679633.7751324-UTR-H-elongata_contig5809:515..5421691679633.7751324-UTR-H-elongata_contig5809:515..542Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5809 516..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5809.13281.1

>prot_H-elongata_contig5809.13281.1 ID=prot_H-elongata_contig5809.13281.1|Name=mRNA_H-elongata_contig5809.13281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MMEDMKGKIRVYARCRPFAQYELERNCKRAVRLIDETTVEVDGHHGAKQF
VFDNVFTEEHNQGVIFQETRNLVQSSLDGYD
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mRNA from alignment at H-elongata_contig5809:93..542-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5809.13281.1 ID=mRNA_H-elongata_contig5809.13281.1|Name=mRNA_H-elongata_contig5809.13281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig5809:93..542- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGCGCAAGAAATACTGGAATATGATGGAGGACATGAAGGGAAA AATCAGGGTGTACGCACGCTGCAGGCCGTTCGCACAGTAAGTCGCACATG TAAAGCTGGCTCTCCTGTTCTGGCAGACCGTGAAGAACGCGAAACGAGGG ATATCATGTTGTTGCTCGCGTAGCGAGAGAGCTGCCTGTACGATCTGAAA CCGTATTTGGAAGAGTGGGACACGAAGTCTCAGAAGCCGACCCCAGCATG CGCCCGAAACGACAAGGTATGAACTTGAACGAAACTGCAAGCGGGCTGTT CGCCTGATTGACGAGACCACGGTCGAGGTGGACGGACACCACGGGGCCAA ACAGTTCGTGTTCGATAATGTCTTCACCGAAGAGCACAACCAAGGCGTCA TCTTCCAAGAAACGAGGAACCTCGTCCAATCGTCTCTCGATGGGTATGAT
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Coding sequence (CDS) from alignment at H-elongata_contig5809:93..542-

>mRNA_H-elongata_contig5809.13281.1 ID=mRNA_H-elongata_contig5809.13281.1|Name=mRNA_H-elongata_contig5809.13281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig5809:93..542- (Himanthalia elongata Himel1 dioecious)
ATGATGGAGGACATGAAGGGAAAAATCAGGGTGTACGCACGCTGCAGGCC
GTTCGCACAATGATGGAGGACATGAAGGGAAAAATCAGGGTGTACGCACG
CTGCAGGCCGTTCGCACAGTATGAACTTGAACGAAACTGCAAGCGGGCTG
TTCGCCTGATTGACGAGACCACGGTCGAGGTGGACGGACACCACGGGGCC
AAACAGTTCGTGTTCGATAATGTCTTCACCGAAGAGCACAACCAAGGCGT
CATCTTCCAAGAAACGAGGAACCTCGTCCAATCGTCTCTCGATGGGTATG
ATGTATGAACTTGAACGAAACTGCAAGCGGGCTGTTCGCCTGATTGACGA
GACCACGGTCGAGGTGGACGGACACCACGGGGCCAAACAGTTCGTGTTCG
ATAATGTCTTCACCGAAGAGCACAACCAAGGCGTCATCTTCCAAGAAACG
AGGAACCTCGTCCAATCGTCTCTCGATGGGTATGAT
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