mRNA_H-elongata_contig58068.13280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58068.13280.1
Unique NamemRNA_H-elongata_contig58068.13280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58068.13280.1 vs. uniprot
Match: A0A836CDK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.710e-5
Identity = 36/116 (31.03%), Postives = 54/116 (46.55%), Query Frame = -2 
Query:   21 SEADSLAEALLCEGEGRFVVHWHGDVEVSRPVLVWNGKTLNVTGFSKDADDTEAGAAIIGNNTNRLVDVNNGSSVLLTRLTF---------SDGDGALKLFGGSSAEIKDCAFLNN 341
            + A  L  A  C  +    V W G V ++ P++V  G TL +TG   D++     AAI G N  +L+ V   ++V L  L           SDG GA+++ GG    ++ C F  N
Sbjct:   44 ASAMKLTAAAACRHQ-TIKVKWRGFVNLTEPIIVAAGTTLEITGVGTDSEP----AAISGQNKTQLLRVRKAAAVTLRNLRLRDGFVQTDGSDGGGAIRISGGGRLVLEACRFWFN 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58068.13280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDK5_9STRA6.710e-531.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58068contigH-elongata_contig58068:1198..1605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.407505-CDS-H-elongata_contig58068:1197..16051622930941.407505-CDS-H-elongata_contig58068:1197..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58068 1198..1605 +
1691679633.7411423-CDS-H-elongata_contig58068:1197..16051691679633.7411423-CDS-H-elongata_contig58068:1197..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58068 1198..1605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58068.13280.1prot_H-elongata_contig58068.13280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58068 1198..1605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58068.13280.1

>prot_H-elongata_contig58068.13280.1 ID=prot_H-elongata_contig58068.13280.1|Name=mRNA_H-elongata_contig58068.13280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
PPYEVELLLRKAQSLISADDPPKSFSAPSPSENVKRVSSTLEPLLTSTRR
FVLFPMMAAPASVSSASFEKPVTFRVLPFHTSTGRDTSTSPCQWTTNLPS
PSQSRASASESASDVVPTMMVSVLLEHGTASSIGT*
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mRNA from alignment at H-elongata_contig58068:1198..1605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58068.13280.1 ID=mRNA_H-elongata_contig58068.13280.1|Name=mRNA_H-elongata_contig58068.13280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig58068:1198..1605+ (Himanthalia elongata Himel1 dioecious)
CCTCCATATGAAGTAGAGTTGTTGTTGAGGAAGGCGCAGTCCTTGATCTC
CGCGGATGATCCGCCGAAGAGTTTCAGCGCTCCGTCACCGTCTGAAAATG
TTAAGCGCGTAAGCAGCACGCTTGAGCCATTATTGACGTCAACTAGACGA
TTCGTGTTATTTCCGATGATGGCCGCTCCTGCCTCCGTGTCATCAGCGTC
TTTCGAGAAGCCCGTCACGTTCAGAGTTTTGCCGTTCCACACGAGTACAG
GCCGAGATACCTCAACGTCGCCATGCCAGTGGACAACAAACCTTCCTTCG
CCTTCGCAAAGTAGGGCCTCGGCAAGCGAATCCGCCTCCGACGTGGTTCC
CACGATGATGGTGTCCGTGCTATTGGAGCATGGAACCGCATCTTCTATCG
GCACATAG
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Coding sequence (CDS) from alignment at H-elongata_contig58068:1198..1605+

>mRNA_H-elongata_contig58068.13280.1 ID=mRNA_H-elongata_contig58068.13280.1|Name=mRNA_H-elongata_contig58068.13280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig58068:1198..1605+ (Himanthalia elongata Himel1 dioecious)
CCTCCATATGAAGTAGAGTTGTTGTTGAGGAAGGCGCAGTCCTTGATCTC
CGCGGATGATCCGCCGAAGAGTTTCAGCGCTCCGTCACCGTCTGAAAATG
TTAAGCGCGTAAGCAGCACGCTTGAGCCATTATTGACGTCAACTAGACGA
TTCGTGTTATTTCCGATGATGGCCGCTCCTGCCTCCGTGTCATCAGCGTC
TTTCGAGAAGCCCGTCACGTTCAGAGTTTTGCCGTTCCACACGAGTACAG
GCCGAGATACCTCAACGTCGCCATGCCAGTGGACAACAAACCTTCCTTCG
CCTTCGCAAAGTAGGGCCTCGGCAAGCGAATCCGCCTCCGACGTGGTTCC
CACGATGATGGTGTCCGTGCTATTGGAGCATGGAACCGCATCTTCTATCG
GCACATAGCCTCCATATGAAGTAGAGTTGTTGTTGAGGAAGGCGCAGTCC
TTGATCTCCGCGGATGATCCGCCGAAGAGTTTCAGCGCTCCGTCACCGTC
TGAAAATGTTAAGCGCGTAAGCAGCACGCTTGAGCCATTATTGACGTCAA
CTAGACGATTCGTGTTATTTCCGATGATGGCCGCTCCTGCCTCCGTGTCA
TCAGCGTCTTTCGAGAAGCCCGTCACGTTCAGAGTTTTGCCGTTCCACAC
GAGTACAGGCCGAGATACCTCAACGTCGCCATGCCAGTGGACAACAAACC
TTCCTTCGCCTTCGCAAAGTAGGGCCTCGGCAAGCGAATCCGCCTCCGAC
GTGGTTCCCACGATGATGGTGTCCGTGCTATTGGAGCATGGAACCGCATC
TTCTATCGGCACATAG
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