mRNA_H-elongata_contig58058.13279.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58058.13279.1
Unique NamemRNA_H-elongata_contig58058.13279.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: D8LCE0_ECTSI (Glutamate synthase (NADH/NADPH-dependent), C-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE0_ECTSI)

HSP 1 Score: 457 bits (1176), Expect = 4.320e-149
Identity = 228/259 (88.03%), Postives = 250/259 (96.53%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDV+IAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVA+QDP+LR+KFTG+PEHVVN+FYLMAEE+RE+MA +GFR++EEM+GRVD+LEINP+VLHYKSRGLDLSALLTPAT+LNENHSGV+KSF+QDHGI+ RID+RIME AKDALE K PVSLKM I+NLDRTTGTILS  IST+ G
Sbjct:  787 VSEVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVVIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVATQDPILRKKFTGKPEHVVNFFYLMAEEVREMMATMGFRSVEEMIGRVDRLEINPDVLHYKSRGLDLSALLTPATSLNENHSGVSKSFEQDHGIDQRIDFRIMEEAKDALESKTPVSLKMPINNLDRTTGTILSNTISTKYG 1045          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A835YLR4_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR4_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 3.770e-140
Identity = 219/259 (84.56%), Postives = 243/259 (93.82%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRD+ IAALLGAEE+AFSTAPLIAMGC+MMRKCHLNTCPVGVA+QDP LRRKFTG+PEHVVN+FYLMAEE+R +MA++GFRT+EEMVGRVD LE+NP+VLHYKSRGLDL+ LLTPA++LNE HSG+TK  +QDHG+  RID+RI+  AKDALE+K PVSL+M ISNLDRTTGTILSY ISTR G
Sbjct: 1074 VSEVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDIAIAALLGAEEFAFSTAPLIAMGCVMMRKCHLNTCPVGVATQDPELRRKFTGKPEHVVNFFYLMAEELRGLMAEMGFRTVEEMVGRVDMLEVNPDVLHYKSRGLDLTPLLTPASSLNEAHSGLTKKMEQDHGLAARIDHRIIAAAKDALEKKTPVSLEMPISNLDRTTGTILSYEISTRYG 1332          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S2V0N1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N1_9STRA)

HSP 1 Score: 378 bits (970), Expect = 1.010e-117
Identity = 188/259 (72.59%), Postives = 221/259 (85.33%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKAKADHIT+SGHDGGTGAA WT +KGAGLPWELG+AEAQQTLVLNDLRSRV+LQTDGQ++NGRD  IAALLGAEE  F+T PLIA+GCIMMRKCHLNTCPVG+A+QDPVLR KF G+PEHVVNYF+L+AEEIRE MA+LGFRT EEM+GR D LE++   +HYKS+GLDLS LL  A +LN N+SGV K  +QDHG++  ID  ++E A+ AL+  + V L+  I+NLDRTTGTILSYNIS + G
Sbjct: 1109 VSEVGVGVVAAGVAKAKADHITISGHDGGTGAAAWTGVKGAGLPWELGIAEAQQTLVLNDLRSRVKLQTDGQIRNGRDCTIAALLGAEEMGFATGPLIALGCIMMRKCHLNTCPVGIATQDPVLRAKFKGQPEHVVNYFFLLAEEIRENMAKLGFRTFEEMIGRSDLLEVDRSAMHYKSKGLDLSPLLQTAPSLNPNNSGVYKVMEQDHGLDSVIDNELIEAARPALDHGEKVRLEYPITNLDRTTGTILSYNISKKFG 1367          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S1GQI6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQI6_CYCTE)

HSP 1 Score: 355 bits (911), Expect = 3.440e-117
Identity = 179/259 (69.11%), Postives = 215/259 (83.01%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKA ADHITVSGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN LR RV+LQTDGQLK GRDV++A LLGAEE+ F+TAPLIAMGCIMMRKCHLNTCPVGVA+QD  LRRKF+G PEHV+NYF+LMAEEIREIMA+LG+R++ EM+G+   LE+NP  LHYKSRGLDLS LLTPA+ LN + +GV     Q HG++   D  ++E A  ALE + PV ++ +++N++RT GT+LSY +S R G
Sbjct:   96 VSEVGVGVVAAGVAKALADHITVSGHDGGTGAAAWTGLKGAGLPWELGLAETQQTLVLNGLRDRVKLQTDGQLKTGRDVVVACLLGAEEFGFATAPLIAMGCIMMRKCHLNTCPVGVATQDEELRRKFSGHPEHVMNYFFLMAEEIREIMAKLGYRSMSEMIGQTQHLEVNPRGLHYKSRGLDLSPLLTPASDLNPS-AGVRNLTTQYHGLDVAKDNELIEKAMPALESQTPVVIEDEVTNINRTLGTMLSYQVSKRYG 353          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: Q40601_OCHDN (NAD(P)H-dependent glutamate synthase (Fragment) n=1 Tax=Ochromonas danica TaxID=2986 RepID=Q40601_OCHDN)

HSP 1 Score: 344 bits (882), Expect = 6.290e-115
Identity = 170/259 (65.64%), Postives = 219/259 (84.56%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKAKADHIT+SG DGGTGAA WT IKGAGLPWELG+AEAQQTLV+N+LR RVRLQTDGQ+K GRDV+IAA LGAEE+ F+TAPLI +GCIMMRKCHLNTCPVG+A+QDP+LR+KF+G+PE+V+N+F+L+AEE+RE MA+LG R+++E+VGR D LE++ +VLH K++GLDLS LLT +  LN   S + K+  Q+H +   +D +I+  A+ ALEE  PV+L+  ++NL+RT GT+LSY+IS + G
Sbjct:   27 VSEVGVGVVAAGVAKAKADHITISGGDGGTGAAAWTGIKGAGLPWELGLAEAQQTLVINNLRDRVRLQTDGQIKTGRDVVIAACLGAEEFGFATAPLITLGCIMMRKCHLNTCPVGIATQDPLLRKKFSGKPEYVINFFFLLAEEVREYMAELGVRSLDELVGRADLLEVDQQVLHEKNKGLDLSGLLTTSYELNPK-SPLKKTTQQNHMLESALDQQIIADARPALEEGVPVTLEYPVTNLNRTVGTMLSYHISKKYG 284          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A6U4IAI1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IAI1_9STRA)

HSP 1 Score: 342 bits (877), Expect = 5.390e-113
Identity = 167/247 (67.61%), Postives = 207/247 (83.81%), Query Frame = 1
Query:   37 VAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VAKAKADHI +SGHDGGTGAA WT +KGAGLP+ELGVAEAQQTLVLNDLRSRVRLQTDGQLK  RDV++A+LLGAEE+ FSTAPLIA+GCIMMRKCHLNTCPVG+A+QDP LR KF G+PEHV+N+F+LMAE++RE MA LGFRT++EMVGR DKL +N +VLHYKS+G+++ ALLTPA+ LN   +G  K+ +QDH +   +D  +M+ A  ALE  + V + + ++NL+RT GT+LS+ ISTR G
Sbjct:    1 VAKAKADHIVISGHDGGTGAAAWTGVKGAGLPFELGVAEAQQTLVLNDLRSRVRLQTDGQLKTARDVVVASLLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFHGQPEHVINFFWLMAEKVREHMADLGFRTMDEMVGRTDKLAVNNDVLHYKSKGMNVDALLTPASQLNPG-AGTIKTMEQDHELELALDNELMKQAAPALESGEKVEINLPVNNLNRTVGTMLSHQISTRYG 246          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S2YAK0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YAK0_9STRA)

HSP 1 Score: 347 bits (890), Expect = 8.120e-111
Identity = 173/259 (66.80%), Postives = 213/259 (82.24%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKA +DHIT+SGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN LR RV+LQTDGQLK GRDV IA LLGAEEY F+TAPL+ MGCIMMRKCHLNTCPVG+A+QD  LR+KF+G+PEHV+NYF+L+AEE+REIMA+LG+RT+EEM+G+   LE+N +  HYKSRGLDLS LL PA+ LN + +G+     Q HG++   D   +E AK+ALE K PV ++ +I N++RT GT+LSY +S + G
Sbjct:  360 VSEVGVGVVAAGVAKALSDHITISGHDGGTGAAAWTGVKGAGLPWELGLAETQQTLVLNGLRDRVKLQTDGQLKTGRDVAIACLLGAEEYGFATAPLVTMGCIMMRKCHLNTCPVGIATQDEELRKKFSGQPEHVMNYFFLLAEEVREIMAKLGYRTMEEMIGQTQNLEMNKKGQHYKSRGLDLSPLLIPASELNPS-TGIRNLTGQYHGLDIAKDNDFVEKAKEALENKTPVVIEDEIENINRTLGTMLSYQVSKKHG 617          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S1ZND1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZND1_TRICV)

HSP 1 Score: 342 bits (876), Expect = 1.650e-110
Identity = 171/259 (66.02%), Postives = 213/259 (82.24%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKA +DHITVSGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN+LR RV+LQTDGQLK GRDV IA LLGAEE+ F+TAPLI MGCIMMRKCHLNTCPVGVA+QD  LR+KF+G+PEHV+NYF+L+AEE+REIMA+LG++T+++M+G+   L++N    HYKSRGLDL+ LLTPA+ LN   +G+  + +Q HG++   D    E AKDAL+   PV ++  I+NL+RT GT+LSY +S + G
Sbjct:  399 VSEVGVGVVAAGVAKALSDHITVSGHDGGTGAAAWTGVKGAGLPWELGLAETQQTLVLNNLRHRVKLQTDGQLKTGRDVAIACLLGAEEFGFATAPLIVMGCIMMRKCHLNTCPVGVATQDEELRKKFSGQPEHVMNYFFLLAEEVREIMAKLGYKTMKDMIGQTQHLDVNKRGQHYKSRGLDLTPLLTPASELNPG-AGIHWTTEQYHGLDIAKDNEFTEKAKDALDNGNPVVIEDVITNLNRTAGTMLSYQVSKKYG 656          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A0W8BVP9_PHYNI (Glutamate synthase 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8BVP9_PHYNI)

HSP 1 Score: 348 bits (893), Expect = 5.680e-110
Identity = 173/259 (66.80%), Postives = 213/259 (82.24%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKAK+DHITVSGHDGGTGAAVWT +K  GLPWELG+AE QQTLVLNDLRSRV+LQTDGQLK GRDV++AALLGAEE+ F+T PLIA+GCIMMRKCHLNTCPVGVA+QDP LR+KF G+PEHVVN+ +++AEE+++ M +LGFR +++++GR D L++N + LHYKSR LDLS LL  A+TLNE  +GV K  +QDH +   ID R++E AK ALE K PV ++   +NLDRT G  LS+ +  R G
Sbjct:  497 VSEVGVGVVAAGVAKAKSDHITVSGHDGGTGAAVWTGVKNGGLPWELGLAETQQTLVLNDLRSRVKLQTDGQLKTGRDVMVAALLGAEEFGFATGPLIALGCIMMRKCHLNTCPVGVATQDPELRKKFQGQPEHVVNFMFMLAEEVQDYMRRLGFRKLDDLIGRADLLKVNQDALHYKSRKLDLSPLLINASTLNEG-AGVKKEMEQDHEVEKCIDMRLIEKAKAALENKTPVVVEDVATNLDRTLGATLSHEVCKRYG 754          
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Match: A0A7S2PI44_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PI44_9STRA)

HSP 1 Score: 351 bits (900), Expect = 6.020e-110
Identity = 178/259 (68.73%), Postives = 212/259 (81.85%), Query Frame = 1
Query:    1 VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVAEAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAMGCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIMAQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSGVTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTILSYNISTRCG 777
            VS+VGVGVVAAGVAKA ADHIT+SGHDGGTGAA WT +KGAGLPWELG+AE QQTLVLN LR RV+LQTDGQLK GRDV+IA LLGAEEY F+T PLIA+GCIMMRKCHLNTCPVG+A+QD  LR+KF G PEHV+NYF+LMAEEIREIMA++G+RT+E+M+G+   LE+N   LHYKSRGLDLS LLTPA+ LN + +G+     Q HG++   D  ++E +KDALE   PV    +I+NL+RT GT+LSY IS R G
Sbjct:  644 VSEVGVGVVAAGVAKALADHITISGHDGGTGAAAWTGLKGAGLPWELGLAETQQTLVLNGLRDRVKLQTDGQLKTGRDVVIACLLGAEEYGFATGPLIALGCIMMRKCHLNTCPVGIATQDEELRKKFAGEPEHVMNYFFLMAEEIREIMAKMGYRTMEDMIGQTQHLEVNRRGLHYKSRGLDLSPLLTPASELNPS-AGIRNLNTQYHGLDLAKDNVLIEKSKDALENGTPVVFDEEINNLNRTCGTMLSYEISKRYG 901          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58058.13279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCE0_ECTSI4.320e-14988.03Glutamate synthase (NADH/NADPH-dependent), C-termi... [more]
A0A835YLR4_9STRA3.770e-14084.56Glutamine amidotransferase type-2 domain-containin... [more]
A0A7S2V0N1_9STRA1.010e-11772.59Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1GQI6_CYCTE3.440e-11769.11Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
Q40601_OCHDN6.290e-11565.64NAD(P)H-dependent glutamate synthase (Fragment) n=... [more]
A0A6U4IAI1_9STRA5.390e-11367.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2YAK0_9STRA8.120e-11166.80Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1ZND1_TRICV1.650e-11066.02Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A0W8BVP9_PHYNI5.680e-11066.80Glutamate synthase 1 n=2 Tax=Phytophthora TaxID=47... [more]
A0A7S2PI44_9STRA6.020e-11068.73Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58058contigH-elongata_contig58058:1056..3568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score462.2
Seed ortholog evalue1.6e-127
Seed eggNOG ortholog2880.D8LCE0
Preferred nameGLT1
KEGG rclassRC00006,RC00010,RC02799
KEGG koko:K00264,ko:K17792
KEGG TC3.A.8.1
KEGG ReactionR00093,R00114,R00248
KEGG Pathwayko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015930,GO:0016040,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0017144,GO:0019676,GO:0019740,GO:0019752,GO:0030447,GO:0032502,GO:0036267,GO:0040007,GO:0042133,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045181,GO:0046394,GO:0046686,GO:0048589,GO:0050896,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070783,GO:0071704,GO:0097054,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698
EggNOG free text desc.L-glutamate biosynthetic process
EggNOG OGsCOG0069@1,KOG0399@2759
EC1.4.1.13,1.4.1.14
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons5
Model size777
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58058.13279.1prot_H-elongata_contig58058.13279.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58058 1056..3568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.270374-CDS-H-elongata_contig58058:1055..12111622930941.270374-CDS-H-elongata_contig58058:1055..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 1056..1211 -
1691679633.6793349-CDS-H-elongata_contig58058:1055..12111691679633.6793349-CDS-H-elongata_contig58058:1055..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 1056..1211 -
1622930941.302909-CDS-H-elongata_contig58058:1622..18031622930941.302909-CDS-H-elongata_contig58058:1622..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 1623..1803 -
1691679633.6946049-CDS-H-elongata_contig58058:1622..18031691679633.6946049-CDS-H-elongata_contig58058:1622..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 1623..1803 -
1622930941.3199866-CDS-H-elongata_contig58058:2220..24341622930941.3199866-CDS-H-elongata_contig58058:2220..2434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 2221..2434 -
1691679633.7063696-CDS-H-elongata_contig58058:2220..24341691679633.7063696-CDS-H-elongata_contig58058:2220..2434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 2221..2434 -
1622930941.3370285-CDS-H-elongata_contig58058:2978..31051622930941.3370285-CDS-H-elongata_contig58058:2978..3105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 2979..3105 -
1691679633.7186987-CDS-H-elongata_contig58058:2978..31051691679633.7186987-CDS-H-elongata_contig58058:2978..3105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 2979..3105 -
1622930941.355894-CDS-H-elongata_contig58058:3469..35681622930941.355894-CDS-H-elongata_contig58058:3469..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 3470..3568 -
1691679633.7324426-CDS-H-elongata_contig58058:3469..35681691679633.7324426-CDS-H-elongata_contig58058:3469..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58058 3470..3568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58058.13279.1

>prot_H-elongata_contig58058.13279.1 ID=prot_H-elongata_contig58058.13279.1|Name=mRNA_H-elongata_contig58058.13279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
VSQVGVGVVAAGVAKAKADHITVSGHDGGTGAAVWTAIKGAGLPWELGVA
EAQQTLVLNDLRSRVRLQTDGQLKNGRDVIIAALLGAEEYAFSTAPLIAM
GCIMMRKCHLNTCPVGVASQDPVLRRKFTGRPEHVVNYFYLMAEEIREIM
AQLGFRTIEEMVGRVDKLEINPEVLHYKSRGLDLSALLTPATTLNENHSG
VTKSFDQDHGINDRIDYRIMELAKDALEEKKPVSLKMDISNLDRTTGTIL
SYNISTRCG
back to top

mRNA from alignment at H-elongata_contig58058:1056..3568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58058.13279.1 ID=mRNA_H-elongata_contig58058.13279.1|Name=mRNA_H-elongata_contig58058.13279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2513bp|location=Sequence derived from alignment at H-elongata_contig58058:1056..3568- (Himanthalia elongata Himel1 dioecious)
GTGTCACAGGTGGGTGTCGGAGTGGTGGCTGCGGGAGTGGCGAAGGCGAA GGCCGACCACATCACGGTCTCGGGACACGATGGTGGAACCGGCGCGGCGG TGAGAGGAAGGCCTCAGGGCCCCTCCGGCGTGAAGTAACGTGATCAAGTG CCGTGCCAATTTGTGCTCTCGGTGGTAGGAAGCCTTCCGTCTATTTTTTG TGTGGCGCTGTTGTTAAGATTTTGTGGTGGCAATAGCAGTAGTACTAATA GCAATAGCAATAGCAGTAGCAATAGCAATAGCAGTAGCAATAGCAATAGC AATAGCAGTAGTTTTCTTTGCGACAACGTTTTGTTCTGTTACTATTTTGT TCTGTCGTGGCTCTGTCGTGTGCGCTAGTTGATCGATGAGCCGCTCGCCC ATCTGTGGTGTGATGTTGTGGCGTTTTTTTTATTGTATCGTGTTGGCGAT CGCATTGCATCAGGTGTGGACGGCAATCAAGGGGGCCGGCCTTCCGTGGG AGCTTGGAGTCGCGGAGGCGCAGCAGACGCTCGTACTCAATGACCTGCGG TCCCGCGTACGCCTCCAGACCGATGGGCAGCTCAAGAATGGTGCGTCCAG CCAAGCGGCAGCCTTCCCACCCTTATACGATATATTGTAGGCGTCCCGTA GGGTAGCGCACCATGCAACACCATTCTATACCATACTATACCATACCTTA GCATGCATTATTATTTTTGTTTAAAAAAAAACTTGAACTCATTCCAACCC ACCCTCCGAACATCCACGCCTTCTTAGCACCATGAGAGGTGCAGTCCAGG GGACCAACTATCGTCAGGTTCGAATGTGTACATTACCACCTGTGAGCACA AAATCGTCACACATGATAATTCGTAGTAAGTTTGTCGGGTCATGTAGGGA CGCCAAATGAAAACCTAGGCCTAGGAGACTTGTATATAAAAAGGGGGAGT TGCGCGGGAGAGAGGGAGGGATTATATAATATATATATATATATATAATA TATATTCGACGTGTTTCTTTTGACGCGTTTCGTTCAAAACAATGTCTCGT TTCGAACAACAACAAAAAGTTTCTACCGATATATAATTATACTGAAGTCG ATACCATGGCGGGTGGCGGGATCGTGGTGTCCAGGGCGCGACGTGATCAT CGCCGCTTTACTGGGGGCCGAAGAATACGCCTTCTCGACCGCACCTCTGA TCGCCATGGGGTGCATCATGATGAGGAAGTGTCACCTCAACACCTGCCCC GTCGGGGTGGCGTCTCAAGATCCCGTCCTGAGGCGGAAGTTCACGGGCAG GCCGGAGCACGTGGTGAACTACTTTTATCTGATGGCGGAGGAGATCAGGT ACTGTACACCAACCACACTCTTGTCGCGACGTTGTTTCGAAAATAGGTCG AAACTTTTTGGGAGGGGAGAAAAAAGGTGAAACGTAAAAGGTGAAAGGTG AAAAGAGGAAAAATAAGAAAAAGTGGAAATTGAAAAGAGTAAAAAATATT TGACAAAAAACTACCCAGAATAAAAATGAAACAACTAAGAACAGCAATCA TAATCATAATCATAATCATAAAACTATCAGAATAATGATAAAATATAGAA CAATAATAATAATAATAATAATAATAGTAATAAAAAAATAATTAGCAAGA GTAATAATAACAATAATAATAATAATATTAGTAATAATAAACTCGCGAGA AGAGACGACACGAGGCGACCCAACACTAAAAGACGTAGCGCCACAACGCG ACACAATATTTTCAGGGAGATCATGGCCCAGCTCGGGTTCCGCACGATCG AGGAGATGGTCGGCCGCGTGGACAAGCTGGAGATCAACCCCGAGGTGCTG CACTACAAAAGCCGCGGCCTCGACCTGTCCGCCCTGCTGACGCCCGCCAC TACCCTCAACGAAAATCATTCGGGCGTCACCAAGAGCTTCGATCAGGTGC GTGTTTGGGGGTTTTGAGGTTGGGGGTTTTCGAAGAGTCTTATTTGTTGT GTCGAGGCAGGCTTTCTCACCTCCATTTTCCCCCTCGGGCACCATTTTTT AATATATATATATATATATATATTTTTTTTATATGTTTATTTTTTTATAT GTTTATTTTTATTGGTACTGAATATAGTAACAAGTCGGAAAGTCGCGGAT CATTTGTGAGCTAGAATGTTGTGCTGCTACTCATGAATCCAATCTGATAT AGAGGGTGGTGAGTAGGACAGCGACGCAATCCAAAAACCTCATCTAAAAT GACTATATTACTAGTAAATATGTTTAAAAAATCCACACGCACAATCAATG ATTAGTGCTTGATTAGTCTCTGAATAGTCTCTGATTAGTTTCGAACCAAA ACCACAGGATCACGGCATCAACGACCGAATAGATTACCGCATCATGGAGC TGGCCAAGGACGCTCTCGAGGAGAAGAAACCGGTATCCCTGAAGATGGAC ATCAGCAACCTCGACCGCACGACGGGCACCATTCTTTCTTACAACATTTC CACCAGGTGCGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig58058:1056..3568-

>mRNA_H-elongata_contig58058.13279.1 ID=mRNA_H-elongata_contig58058.13279.1|Name=mRNA_H-elongata_contig58058.13279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig58058:1056..3568- (Himanthalia elongata Himel1 dioecious)
GTGTCACAGGTGGGTGTCGGAGTGGTGGCTGCGGGAGTGGCGAAGGCGAA
GGCCGACCACATCACGGTCTCGGGACACGATGGTGGAACCGGCGCGGCGG
TGTCACAGGTGGGTGTCGGAGTGGTGGCTGCGGGAGTGGCGAAGGCGAAG
GCCGACCACATCACGGTCTCGGGACACGATGGTGGAACCGGCGCGGCGGT
GTGGACGGCAATCAAGGGGGCCGGCCTTCCGTGGGAGCTTGGAGTCGCGG
AGGCGCAGCAGACGCTCGTACTCAATGACCTGCGGTCCCGCGTACGCCTC
CAGACCGATGGGCAGCTCAAGAATGGTGTGGACGGCAATCAAGGGGGCCG
GCCTTCCGTGGGAGCTTGGAGTCGCGGAGGCGCAGCAGACGCTCGTACTC
AATGACCTGCGGTCCCGCGTACGCCTCCAGACCGATGGGCAGCTCAAGAA
TGGGCGCGACGTGATCATCGCCGCTTTACTGGGGGCCGAAGAATACGCCT
TCTCGACCGCACCTCTGATCGCCATGGGGTGCATCATGATGAGGAAGTGT
CACCTCAACACCTGCCCCGTCGGGGTGGCGTCTCAAGATCCCGTCCTGAG
GCGGAAGTTCACGGGCAGGCCGGAGCACGTGGTGAACTACTTTTATCTGA
TGGCGGAGGAGATCAGGGCGCGACGTGATCATCGCCGCTTTACTGGGGGC
CGAAGAATACGCCTTCTCGACCGCACCTCTGATCGCCATGGGGTGCATCA
TGATGAGGAAGTGTCACCTCAACACCTGCCCCGTCGGGGTGGCGTCTCAA
GATCCCGTCCTGAGGCGGAAGTTCACGGGCAGGCCGGAGCACGTGGTGAA
CTACTTTTATCTGATGGCGGAGGAGATCAGGGAGATCATGGCCCAGCTCG
GGTTCCGCACGATCGAGGAGATGGTCGGCCGCGTGGACAAGCTGGAGATC
AACCCCGAGGTGCTGCACTACAAAAGCCGCGGCCTCGACCTGTCCGCCCT
GCTGACGCCCGCCACTACCCTCAACGAAAATCATTCGGGCGTCACCAAGA
GCTTCGATCAGGGAGATCATGGCCCAGCTCGGGTTCCGCACGATCGAGGA
GATGGTCGGCCGCGTGGACAAGCTGGAGATCAACCCCGAGGTGCTGCACT
ACAAAAGCCGCGGCCTCGACCTGTCCGCCCTGCTGACGCCCGCCACTACC
CTCAACGAAAATCATTCGGGCGTCACCAAGAGCTTCGATCAGGATCACGG
CATCAACGACCGAATAGATTACCGCATCATGGAGCTGGCCAAGGACGCTC
TCGAGGAGAAGAAACCGGTATCCCTGAAGATGGACATCAGCAACCTCGAC
CGCACGACGGGCACCATTCTTTCTTACAACATTTCCACCAGGTGCGGCGA
TCACGGCATCAACGACCGAATAGATTACCGCATCATGGAGCTGGCCAAGG
ACGCTCTCGAGGAGAAGAAACCGGTATCCCTGAAGATGGACATCAGCAAC
CTCGACCGCACGACGGGCACCATTCTTTCTTACAACATTTCCACCAGGTG
CGGC
back to top