mRNA_H-elongata_contig5804.13278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5804.13278.1
Unique NamemRNA_H-elongata_contig5804.13278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5804.13278.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.540e-42
Identity = 135/397 (34.01%), Postives = 183/397 (46.10%), Query Frame = 2 
Query:    2 GSVWRGKTMLHAEEGLWLAERGMLAVHPPSRSEESDTDEISLAA----RSGRXXXXXXXTVASVTTGAKEAPVLSPSFSK----------------TLTLSSKVTTGPRFQQPAVFSAPATNSITVE-------------DSATTGKAGTISEAENRIVSLNSEFRIVEEKGVRGARARARAGGHRG-------AAPSISVEALHG-VLSRAGVPWECYRAYAELRRRSFVVRRRPEDTIGQDDKAPRAPSLSWFG-----EPPNAKRCAVAEATAGDGSHLFLPVTFHVYAP----NAAFQRREPGPPDFWLAVCRYGDPMPSHDELIYLAERHAEV---------WG--ARKDNKAGQAPGQGDGIRVYDGGGGDKKYACPSSVKRHAAIPAGKE 1009
            G+ WR + MLHAEEGLWL ERGMLAVHP S + + + D    A+     SG         +   T  +   P ++                     T  + S      R   P    +P  + + +              ++A TG+ G       ++ +   E R  +  G +    R+R G  RG       AA S+SV  L+  VL+RAGVPWECYR YAEL+RRS+VVRR+PEDT+G DD APRA  LSWF      +  N K    A  T+   S L  PVTFHVY+     +++F++R+PGPPD  + VCR+GDPMP H  L+ L E HA +         W    R+D+ AG     G      D G G  +               G+E
Sbjct:   65 GTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAELSPIDSGVILTGESQHSLDPVASGETARTGQGGGC----RKVPTAAKEGR--QRAGCK----RSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSPSSSL--PVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQQWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRE 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5804.13278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI1.540e-4234.01tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5804contigH-elongata_contig5804:7235..9600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1455
Cds size1020
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5804.13278.1prot_H-elongata_contig5804.13278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5804 7645..9575 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.1583323-UTR-H-elongata_contig5804:7234..76441622930941.1583323-UTR-H-elongata_contig5804:7234..7644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5804 7235..7644 -
1691679633.638623-UTR-H-elongata_contig5804:7234..76441691679633.638623-UTR-H-elongata_contig5804:7234..7644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5804 7235..7644 -
1622930941.2155926-UTR-H-elongata_contig5804:9575..96001622930941.2155926-UTR-H-elongata_contig5804:9575..9600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5804 9576..9600 -
1691679633.66799-UTR-H-elongata_contig5804:9575..96001691679633.66799-UTR-H-elongata_contig5804:9575..9600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5804 9576..9600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.1797361-CDS-H-elongata_contig5804:7644..81281622930941.1797361-CDS-H-elongata_contig5804:7644..8128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5804 7645..8128 -
1691679633.6479156-CDS-H-elongata_contig5804:7644..81281691679633.6479156-CDS-H-elongata_contig5804:7644..8128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5804 7645..8128 -
1622930941.1968799-CDS-H-elongata_contig5804:9039..95751622930941.1968799-CDS-H-elongata_contig5804:9039..9575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5804 9040..9575 -
1691679633.657433-CDS-H-elongata_contig5804:9039..95751691679633.657433-CDS-H-elongata_contig5804:9039..9575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5804 9040..9575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5804.13278.1

>prot_H-elongata_contig5804.13278.1 ID=prot_H-elongata_contig5804.13278.1|Name=mRNA_H-elongata_contig5804.13278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
MLHAEEGLWLAERGMLAVHPPSRSEESDTDEISLAARSGRGGGGGSGTVA
SVTTGAKEAPVLSPSFSKTLTLSSKVTTGPRFQQPAVFSAPATNSITVED
SATTGKAGTISEAENRIVSLNSEFRIVEEKGVRGARARARAGGHRGAAPS
ISVEALHGVLSRAGVPWECYRAYAELRRRSFVVRRRPEDTIGQDDKAPRA
PSLSWFGEPPNAKRCAVAEATAGDGSHLFLPVTFHVYAPNAAFQRREPGP
PDFWLAVCRYGDPMPSHDELIYLAERHAEVWGARKDNKAGQAPGQGDGIR
VYDGGGGDKKYACPSSVKRHAAIPAGKEDRRVSEAMERS*
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mRNA from alignment at H-elongata_contig5804:7235..9600-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5804.13278.1 ID=mRNA_H-elongata_contig5804.13278.1|Name=mRNA_H-elongata_contig5804.13278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2366bp|location=Sequence derived from alignment at H-elongata_contig5804:7235..9600- (Himanthalia elongata Himel1 dioecious)
GGGCTCGGTGTGGCGTGGAAAGACGATGCTCCACGCCGAGGAAGGGCTCT
GGCTGGCCGAGCGGGGCATGCTCGCCGTCCATCCTCCTTCGCGGTCTGAG
GAAAGCGACACCGACGAGATCTCGCTCGCTGCACGCTCCGGAAGGGGTGG
TGGAGGTGGCAGCGGGACTGTAGCTTCGGTGACAACGGGGGCCAAAGAAG
CCCCGGTTTTATCGCCGAGCTTTTCTAAAACTCTGACGTTATCGAGCAAA
GTGACGACGGGCCCGCGATTTCAGCAGCCCGCGGTGTTTAGTGCGCCTGC
GACGAACTCGATTACGGTAGAAGACTCGGCTACGACCGGGAAGGCGGGGA
CTATATCAGAGGCAGAAAACCGGATAGTGTCTCTGAACAGCGAGTTCCGG
ATCGTCGAGGAGAAGGGCGTCAGGGGCGCGAGGGCGAGAGCGAGAGCGGG
GGGGCACAGAGGCGCGGCTCCATCCATTTCGGTTGAAGCACTTCACGGCG
TCCTTTCGCGGGCAGGTGTGCCGTGGGAGTGTTATCGCGCCTACGCGGAG
CTCAGACGAAGGCGAGGCCCGGCGAGAAGGGGGCTTTGGGCTTGAGAGAA
GTGTGTCTGAGGCAATCAATCACGTTGTCGAAAAAACGAGTATTTCCTAC
TAGATAAAACATGTTTTTTAGTAGCATGTAGTCTCGAGTTAGGGTTGCTA
GCACGGCAAACAAAAGAACCATGGTTCCCGGTTACCTAGATTCCAATATT
TTAGTCCTTTCGTGGGAAAACGCGGAGGGAATTTTCCTGAAAGGATGCTA
AGGATTTAGGGTTGGGGTCTTCGCGGGGTTTCCACGACAAGAGTCATTTT
TCTACGAAGTGGAGCCGGATCAAATGGTTTGCGGCACGAAGAAATGTGCT
ATCGTAGGTGACTTGTTACTCTATGCATTCCGTTAGGCCTGCGGTAAATG
GTGACGCGACCTGGTGCGTCTCTCTCCGACAATAGAGCATGCTCGATAAT
CCCTTAGATTTATCTTGTCATGAGGGCAAACAGACACACGCAGTGAGGTG
GTCAGGGCTTTTGCCGTAGCGTAACCGTGGTTGGCCACAACAGCACGCCT
GATGGCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CACCCCNNNNNNNNNNCCCAGGGGGGGGGTCCGGCGTTTTGCCCCAGGGT
AACCCGGGGTGGCCCCAACAGCCCCCCCTGTGGCCCCCCCCCCCCCCCCC
CCTCCCCCTTATCTGCTCTCCGAAAAACTGACCAAGCAAAGTATTCGATC
GCGATCTTGAACGCCTGAGTCCCTCCGTCAGGAGGCATAGCCAAGGATAT
AATAGCTAACAGTTGAGGCATGCAAAACTAGCCAATCCCCCTACCGCCCC
CCCGCCCCCCACCTTCCGTGAATCGTGTTGGGGCCAAGCACACAATTTTC
CTTCCTATCCCTTCGGCCGAAGATCATTTGTTGTCAGGCGACGTCCGGAA
GACACCATCGGCCAGGACGACAAGGCTCCTCGCGCACCGTCTCTTTCTTG
GTTTGGCGAGCCGCCAAACGCGAAACGGTGTGCAGTCGCTGAAGCCACCG
CTGGGGACGGCTCCCACCTTTTTTTGCCGGTGACTTTCCACGTATATGCC
CCAAACGCCGCGTTTCAGAGGCGCGAGCCGGGCCCGCCAGACTTCTGGCT
TGCCGTGTGCCGGTACGGCGACCCGATGCCTTCCCACGACGAGCTGATCT
ATCTCGCAGAGCGCCACGCTGAAGTTTGGGGGGCTAGAAAGGACAATAAA
GCTGGTCAAGCACCGGGTCAAGGCGACGGCATCCGTGTGTATGACGGAGG
GGGGGGGGACAAGAAATATGCTTGTCCCAGTTCGGTGAAGCGTCACGCGG
CGATCCCAGCTGGAAAAGAGGATCGAAGGGTTTCAGAAGCGATGGAGAGG
AGCTAAGGTTGTCGGGAGACGCGGTGGGGACGCAGGGAGCTCGGGTAGAG
GAAAAGCAGAGAGAGCCAGGTAAAAAAAGGAACTTCAAGAGAGAGAGGGG
CGCGCAAGGGTTGAAGGTTGCGGTGGTTTCGGGAGACGGAAGTGTTCACA
TATTCGACGTAGGAATACACGCTTTGTGACAGCATGCTTGCGGTCAACCA
TGTAATTACCTAACAGCCGCAAGCTGTGTATCAAGATTTGGCCATGCGAT
CCGCTTAGTCGGAATGCGGTGGCGTCCCCCACACAACCTCGCGAATCACG
GCGAAGAAGGTGAATTGAGACCTTGGACTCTTTTGAGGTTTCCCGGGACC
ACGGCGGCTGTCCTCCTCTTGAGGTACCGCAACCGACCGTAAAACATGAT
ATATACCTTGTGCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig5804:7235..9600-

>mRNA_H-elongata_contig5804.13278.1 ID=mRNA_H-elongata_contig5804.13278.1|Name=mRNA_H-elongata_contig5804.13278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2040bp|location=Sequence derived from alignment at H-elongata_contig5804:7235..9600- (Himanthalia elongata Himel1 dioecious)
ATGCTCCACGCCGAGGAAGGGCTCTGGCTGGCCGAGCGGGGCATGCTCGC
CGTCCATCCTCCTTCGCGGTCTGAGGAAAGCGACACCGACGAGATCTCGC
TCGCTGCACGCTCCGGAAGGGGTGGTGGAGGTGGCAGCGGGACTGTAGCT
TCGGTGACAACGGGGGCCAAAGAAGCCCCGGTTTTATCGCCGAGCTTTTC
TAAAACTCTGACGTTATCGAGCAAAGTGACGACGGGCCCGCGATTTCAGC
AGCCCGCGGTGTTTAGTGCGCCTGCGACGAACTCGATTACGGTAGAAGAC
TCGGCTACGACCGGGAAGGCGGGGACTATATCAGAGGCAGAAAACCGGAT
AGTGTCTCTGAACAGCGAGTTCCGGATCGTCGAGGAGAAGGGCGTCAGGG
GCGCGAGGGCGAGAGCGAGAGCGGGGGGGCACAGAGGCGCGGCTCCATCC
ATTTCGGTTGAAGCACTTCACGGCGTCCTTTCGCGGGCAGGTGTGCCGTG
GGAGTGTTATCGCGCCTACGCGGAGCTCAGACGAAGATGCTCCACGCCGA
GGAAGGGCTCTGGCTGGCCGAGCGGGGCATGCTCGCCGTCCATCCTCCTT
CGCGGTCTGAGGAAAGCGACACCGACGAGATCTCGCTCGCTGCACGCTCC
GGAAGGGGTGGTGGAGGTGGCAGCGGGACTGTAGCTTCGGTGACAACGGG
GGCCAAAGAAGCCCCGGTTTTATCGCCGAGCTTTTCTAAAACTCTGACGT
TATCGAGCAAAGTGACGACGGGCCCGCGATTTCAGCAGCCCGCGGTGTTT
AGTGCGCCTGCGACGAACTCGATTACGGTAGAAGACTCGGCTACGACCGG
GAAGGCGGGGACTATATCAGAGGCAGAAAACCGGATAGTGTCTCTGAACA
GCGAGTTCCGGATCGTCGAGGAGAAGGGCGTCAGGGGCGCGAGGGCGAGA
GCGAGAGCGGGGGGGCACAGAGGCGCGGCTCCATCCATTTCGGTTGAAGC
ACTTCACGGCGTCCTTTCGCGGGCAGGTGTGCCGTGGGAGTGTTATCGCG
CCTACGCGGAGCTCAGACGAAGATCATTTGTTGTCAGGCGACGTCCGGAA
GACACCATCGGCCAGGACGACAAGGCTCCTCGCGCACCGTCTCTTTCTTG
GTTTGGCGAGCCGCCAAACGCGAAACGGTGTGCAGTCGCTGAAGCCACCG
CTGGGGACGGCTCCCACCTTTTTTTGCCGGTGACTTTCCACGTATATGCC
CCAAACGCCGCGTTTCAGAGGCGCGAGCCGGGCCCGCCAGACTTCTGGCT
TGCCGTGTGCCGGTACGGCGACCCGATGCCTTCCCACGACGAGCTGATCT
ATCTCGCAGAGCGCCACGCTGAAGTTTGGGGGGCTAGAAAGGACAATAAA
GCTGGTCAAGCACCGGGTCAAGGCGACGGCATCCGTGTGTATGACGGAGG
GGGGGGGGACAAGAAATATGCTTGTCCCAGTTCGGTGAAGCGTCACGCGG
CGATCCCAGCTGGAAAAGAGGATCGAAGGGTTTCAGAAGCGATGGAGAGG
AGCTAAATCATTTGTTGTCAGGCGACGTCCGGAAGACACCATCGGCCAGG
ACGACAAGGCTCCTCGCGCACCGTCTCTTTCTTGGTTTGGCGAGCCGCCA
AACGCGAAACGGTGTGCAGTCGCTGAAGCCACCGCTGGGGACGGCTCCCA
CCTTTTTTTGCCGGTGACTTTCCACGTATATGCCCCAAACGCCGCGTTTC
AGAGGCGCGAGCCGGGCCCGCCAGACTTCTGGCTTGCCGTGTGCCGGTAC
GGCGACCCGATGCCTTCCCACGACGAGCTGATCTATCTCGCAGAGCGCCA
CGCTGAAGTTTGGGGGGCTAGAAAGGACAATAAAGCTGGTCAAGCACCGG
GTCAAGGCGACGGCATCCGTGTGTATGACGGAGGGGGGGGGGACAAGAAA
TATGCTTGTCCCAGTTCGGTGAAGCGTCACGCGGCGATCCCAGCTGGAAA
AGAGGATCGAAGGGTTTCAGAAGCGATGGAGAGGAGCTAA
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