mRNA_H-elongata_contig58034.13277.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58034.13277.1
Unique NamemRNA_H-elongata_contig58034.13277.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 4.590e-124
Identity = 176/235 (74.89%), Postives = 195/235 (82.98%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            M+RT + A+A  ML   A +L+V TPS+GL VI+DRTYTVEW    S +RFEIDLYYCGS C+ED+CG+WVTALCPYG  GCPDNEGDYD+VMPEPM  TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A    EYTVEFDYDNGVGSSVDRF IDLY + G GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT AG YKIRV RFEDD
Sbjct:    1 MTRTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDD 234          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 2.100e-122
Identity = 175/235 (74.47%), Postives = 196/235 (83.40%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            M+RT + A+A +ML   A +LEV+TPS  L+V++DRTYTVEW   DSG RFEIDLY+CGS C+ED CG+WVTALCPYG  GCPDNEGDYD+VMPEPM+  S SGYKVRVMDV+DE  +DCSD FYLMAS+++P  G E G  LTVTSPAEGD A AGEEYTVEFDYDNGVGS VDRF IDLY + G GDCGTYVTSICDKPSIGCKDSMGDYDVEIP DT AG YKIRVGRFED+
Sbjct:    1 MARTGFVALACAMLG-AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDE 233          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 5.740e-115
Identity = 158/218 (72.48%), Postives = 183/218 (83.94%), Query Frame = 1
Query:   52 ARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            A +LEV+TP+EG +V++ R YTVEW    S +R+EIDLYYCGS C+EDECG+WVTALCPYG  GCPDNEGDYD+VMPEPM+ TSGSGYKVRV DV+D+   DCSDEFYLMA  E+P  GD  GP +TVTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY ++GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED  AGMY IRVG FEDD
Sbjct:    5 ASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDD 222          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 1.840e-114
Identity = 164/235 (69.79%), Postives = 189/235 (80.43%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            M RT + A+A  ML   A +LEV+TP+ G +V+S R YTVEW+   S  RFEIDLYYC S C+EDECGEWVTALCPYG  GCPDNEGDYD+VMPEPM+ TSGSGYKVRV DV+DE   DCSDEFYLMA  ++P   D  GP +TVTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY ++GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED  AGMY IRVG FED+
Sbjct:    2 MVRTGFVALACGMLGV-ASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDE 235          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 8.920e-107
Identity = 157/236 (66.53%), Postives = 182/236 (77.12%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDS----MGDYDVEIPEDTTAGMYKIRVGRF 696
            M+RT + A+A  ML   A +L+V TPS+GL VI+DRTYTVEW    S +RFEIDLYYCGS C+ED+CG+WVTALCPYG  GCPDNEGDYD+VMPEPM+ TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A    EYTVEFDYDNGVGS VDRF IDLY + G GDCGTYV SICDKP+IGCKDS     G + V+       G + + V R+
Sbjct:    2 MARTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 7.100e-104
Identity = 155/236 (65.68%), Postives = 188/236 (79.66%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYE-SSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            M+RT + A+A  ML   A +LEV++P+ G+ VI+DRTYTVEW  G S SRFEIDLYYCGS+C+EDECG+WVTALCPYG+ GCPD +GDYD+VMPEPM  TS SGYKV V D NDE+ + CS +F L+AS ++P  G E G +LTVTSP++GD A+AG  YTVE+DY+NG+GSS DRF IDLY   +G+GDCGTYV ++CDKPSIGC DS GDYDVEIP DT AGMY +RVG F DD
Sbjct:    1 MARTAFAALAFGMLG-AANALEVVSPAAGISVIADRTYTVEWT-GTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAG-EVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDD 232          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 2.690e-103
Identity = 155/235 (65.96%), Postives = 185/235 (78.72%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            M+RT + A+A  ML   A +LEV++P+ G +V++D  YTVEW    SG R++IDLYYCGS C+EDECG+WVTALCPYG  GCPD +GDYDVVMPEPM+ TS SGYKV V D +DE+D  CS +F L+AS E+P   D  G  ++VTSP++GD A+AG EYTVEFDYDNG+GSSV+RF IDLY S GSGDCGTYVT+ICDKPSIGCKDS GDYDV IP  T +GMY IRVG FEDD
Sbjct:    1 MARTAFAALAFGMLG-AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDD 231          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 6.720e-102
Identity = 148/235 (62.98%), Postives = 188/235 (80.00%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            M+RT + AVA  ML+  A +LEV++P  G+ V++DR YTVEW  G +  RFEIDLYYC S+C++D CG+WVTALCPYG+ GCPD+ GDYD++MPEPM+ TS SGYKV V +  DE+D+ CSD+F L+AS+++P  G E G +LTVTSP++GD A+AGE YTVE+DY+NG GSS DRF +DLY   G+GDCGTYVT++CD+PSIGC DS GDYDVEIP DT AGMY IRVG F+D+
Sbjct:    1 MARTAFAAVAFGMLS-AANALEVVSPDGGISVLADRAYTVEWT-GTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAG-EMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDE 231          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.630e-88
Identity = 135/173 (78.03%), Postives = 145/173 (83.82%), Query Frame = 1
Query:  187 VEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
            VEDECGEWVTALCPYGS GCPDNEGDYD+VMPEPM+ TSGSGYKVRV DV+   D DCSDEFYLMAS E+PVVG  D P L VTSP+ GD A AG EYTVEFDYDNGVGS VDRFKIDLY   G+GDCGT+V ++CDK +IGCKDSMGDYDVEIPE    GMY IRVGRFEDD
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDD 184          
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.680e-80
Identity = 134/234 (57.26%), Postives = 157/234 (67.09%), Query Frame = 1
Query:    1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFED 702
            M+RT + A+A  ML     +LEV +P+ G ++++  + TVEW  G S  RF+IDLYYCGS C+EDECG+WVTALCPYG  GCPD +GDYDVVMPEPM+ TS SGYKV V D +DE+D+ CS EF L+AS                                  FD+DNG GSSV+RF IDLY S GSGDCGTYVTSICDK SIGCKDS GDYDV IP DT +GMY IRVG FED
Sbjct:    1 MARTAFAALAFGMLG-AVNALEVTSPAAGDMIVAASSTTVEWT-GTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVAS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFED 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE4.590e-12474.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI2.100e-12274.47EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D8LI46_ECTSI5.740e-11572.48EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE1.840e-11469.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH21_ECTSI8.920e-10766.53Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
D7G3F0_ECTSI7.100e-10465.68EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI2.690e-10365.96Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE6.720e-10262.98GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5JEJ8_9PHAE1.630e-8878.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE1.680e-8057.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58034contigH-elongata_contig58034:2..2935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size705
Cds size705
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58034.13277.1prot_H-elongata_contig58034.13277.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58034 2..2935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.0321043-CDS-H-elongata_contig58034:1..811622930941.0321043-CDS-H-elongata_contig58034:1..81Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 2..81 -
1691679633.5888994-CDS-H-elongata_contig58034:1..811691679633.5888994-CDS-H-elongata_contig58034:1..81Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 2..81 -
1622930941.0567913-CDS-H-elongata_contig58034:618..7541622930941.0567913-CDS-H-elongata_contig58034:618..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 619..754 -
1691679633.6022887-CDS-H-elongata_contig58034:618..7541691679633.6022887-CDS-H-elongata_contig58034:618..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 619..754 -
1622930941.0781474-CDS-H-elongata_contig58034:970..12671622930941.0781474-CDS-H-elongata_contig58034:970..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 971..1267 -
1691679633.6136272-CDS-H-elongata_contig58034:970..12671691679633.6136272-CDS-H-elongata_contig58034:970..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 971..1267 -
1622930941.0951092-CDS-H-elongata_contig58034:2441..25261622930941.0951092-CDS-H-elongata_contig58034:2441..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 2442..2526 -
1691679633.6214855-CDS-H-elongata_contig58034:2441..25261691679633.6214855-CDS-H-elongata_contig58034:2441..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 2442..2526 -
1622930941.1130245-CDS-H-elongata_contig58034:2828..29351622930941.1130245-CDS-H-elongata_contig58034:2828..2935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 2829..2935 -
1691679633.6294-CDS-H-elongata_contig58034:2828..29351691679633.6294-CDS-H-elongata_contig58034:2828..2935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58034 2829..2935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58034.13277.1

>prot_H-elongata_contig58034.13277.1 ID=prot_H-elongata_contig58034.13277.1|Name=mRNA_H-elongata_contig58034.13277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSR
FEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDT
SGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAE
GDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDK
PSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD
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mRNA from alignment at H-elongata_contig58034:2..2935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58034.13277.1 ID=mRNA_H-elongata_contig58034.13277.1|Name=mRNA_H-elongata_contig58034.13277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2934bp|location=Sequence derived from alignment at H-elongata_contig58034:2..2935- (Himanthalia elongata Himel1 dioecious)
ATGTCGCGCACCATCTACTTTGCTGTGGCCGTCTCTATGCTAGCTCGAGG AGCTAGATCTCTGGAGGTTATCACTCCTTCTGAAGGACTAGTCGTGATCT CTGATCGGTAAGCACGTCCGCACGGGGACGGGACGAATGCGAGCACTTGT GGAATCATTATTCGGCTTGGAATTCACGCCACGATAGGAGACCTCGTCGA ATATTATTTGAACGACTAACCAACGTAGTACTTACTATAATTGAATATAT CGGATTCTCTGTTGTTGTATTATGTCGTATAAGCTGTCACTTATACTATT ACTACAGAGTACGTATATTATTCGTAAAAACGCGGCGCGCCCACCTTCCG AGCTCTCGTGTCTGAACATTTTATCATCTTCGTACTCCTGCAACACCGAT CGATCGCAGAACGTACACCGTGGAGTGGAACGATGGTGACTCAGGGAGCC GCTTCGAGATCGACTTGTACTACTGCGGCTCTTATTGCGTCGAGGTAAAA ACACATAGTATGTAATAAAGTAATTCACATCACATTCTCCTGTGTACCAA AGTCACATAATCTACACGTACTATTTGTATTATGTAGCCTGACGAAATCA GGTGTGATCAGATCGAGCTCGTGAGAGGTTAAGTGTCTCCCATGATGGCG CATTTTAGGCATAAATCACCACCCACCCTACTAAGTAGCTGCCTTTGCTT GTCTCATCCGACAGTTATTCGTGCCTCTTTGCTACATAATAAGCCCCAAT ATCGGGTCGTGCGCCCCACCTTGATTATTATGGGATGCGGTTGATAAAAT ACATTCAGCCCGCTGCTACAAACAAACCAGAGTCAGTCGTCTTGTGTTTC TGCACAGAGGATCAGAAAGTAGAGTTTAGTGGTAGAAGTCGCGACACTGA AGGTTGCGTTTTAAATATTGGATTACTCTTTTAACTCGATGGGCTCGTTA CTACTAGTCACTAGCCCCTTCGACGATAACACTGCATATCCCAAGTGTGA GGTTCTTACCCAGCTCTCTCGGCTTAAACCTAGTCGACAAACGGTCACAC TAAGTGCCTGGTAGATGATACGTTCCATTCAGCCGAAACCATTTCAATTT TAAAATAACGCTACCGTGTCACTTATTTTTATTCCCCTCTCTCCCGCATC CACTGATCTTACAGTATTTGATATAGAAATATCTCTACTGTATCTTCAGC ATATATATCATTTACCTACTATGCCTAACAGCGCGTCCTTATCACAGAAC TCTCTAGCCTCTGGTTTGGCGTCCCCACACATACATGATGATTTTGTGCT CAAAGGTAGTTCTGTATTATGGTATATACACATTCGAACCTGACGATAGT TGGTCCCCTGGATTACACCTCTCACGGTGCTAAGAAGATGTGGGTGTTCG GAGGGTTGGGATGAGTTAATGTTTAAAAAAATTAAAATACCAGTGTACGG GATGATGATGGGATTCCGGCATTAAAACGTCGACTCGATGAACTGTTTTA CTAACCAGTACTAAATACTAATAATGTACACATTCGAACCTGTTTTTTAA GAAATCAATTTGTTTCGCCGGTATTTCAATTTCGGCAAAAAATGTAAATC TCCGCCGTACAAAGAAAGGCTCGTTTTTCATTCGTTTACGCGTTCACACC TACGACCACCACATCCAGGACGAGTGCGGCGAATGGGTTACCGCGCTCTG CCCCTACGGATCGACGGGGTGTCCCGACAACGAAGGCGACTACGACGTTG TCATGCCTGAACCCATGAATGACACCTCCGGGTCCGGCTACAAGGTCCGC GTAATGGACGTAAACGATGAGACCGATGTTGACTGCTCGGACGAATTTTA TCTCATGGCGTCGGACGAGTCACCTGTGGTTGGTGACGAGGACGGGCCTA CCCTGACCGTTACTTCCCCCGCTGAGGGCGACGTGGCCATCGCTGGCGAA GAGTACACGGTTGAGGTGAGTAAAATAAAATTGCATGCCAAATGCACATC GATTCTAGGTTCCTGTTTGGTTTGAGGTTTAGGCAATGATTCGCTTTATG TTTTGTTTCAGTTTGTGCATATATGATGTAGAAAATAGCGCTTGTTGTAT AAACCCCATGTGGCTAAAGGTTTGAAATAACTTAACTATTGACTCGCTCT ACTTTTCCTCTGTTTTTGCTTCGGCTTTCAGTTCGACTACGACAACGGCG TGGGCTCTAGTGTAGACCGATTCAAGATTGACCTCTACGAGTCCTCTGGC TCTGGAGACTGCGGTACCTACGTCACCTCTATCTGCGACAAGCCCTCTAT CGGATGCAAAGACTCAAGTAAGTTTTCGACGAGTATAATTACAAAAAACA AAAGCTCGCATGTGGCAGAATGTCGTACTATTAGAACCGTTGACTTTCAT GTTTAAGTTGGAAGCTGGCCGTTGAATAAAATTGTATTTTTCAGTTACAA GTAAAAAACCTGATTTACAACTGACGATAGATAGTTCGTCCCCTAAATTT CATCGAGCCTTGTGTAATGTTGTTGGTCACACATTTAGCAGATGATCAAC CGGATTTGGTTGCCTTCTGCTTGTGATCAGCTGAACAGGGGAAAATATTT TTCACCTGTCCCCGTTCTAAAGATGATGTGTGGGTGTTCGGAGGAAATAA ATAAGTTCATATGTTTTTGCCAGCGCTCTAATTACTTTTATTTTGAGCGA ACTCCATATTACCTAAGAATGTAGCAAACTTGGCAAGGTGAGTTCGAAGG GTAATCGAGGGTAGAAGTGTCAGGTGTAATCGTTTACGGTGTGGTGATAA ATAATTCTCAAAAATGAAAATATATTTTACGTTTTTACGGTCGCTTGTCT GCAGTGGGCGACTACGACGTGGAGATCCCTGAGGACACGACGGCGGGCAT GTACAAGATCCGAGTCGGGCGCTTCGAGGATGAC
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Coding sequence (CDS) from alignment at H-elongata_contig58034:2..2935-

>mRNA_H-elongata_contig58034.13277.1 ID=mRNA_H-elongata_contig58034.13277.1|Name=mRNA_H-elongata_contig58034.13277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig58034:2..2935- (Himanthalia elongata Himel1 dioecious)
ATGTCGCGCACCATCTACTTTGCTGTGGCCGTCTCTATGCTAGCTCGAGG
AGCTAGATCTCTGGAGGTTATCACTCCTTCTGAAGGACTAGTCGTGATCT
CTGATCGATGTCGCGCACCATCTACTTTGCTGTGGCCGTCTCTATGCTAG
CTCGAGGAGCTAGATCTCTGGAGGTTATCACTCCTTCTGAAGGACTAGTC
GTGATCTCTGATCGAACGTACACCGTGGAGTGGAACGATGGTGACTCAGG
GAGCCGCTTCGAGATCGACTTGTACTACTGCGGCTCTTATTGCGTCGAGA
ACGTACACCGTGGAGTGGAACGATGGTGACTCAGGGAGCCGCTTCGAGAT
CGACTTGTACTACTGCGGCTCTTATTGCGTCGAGGACGAGTGCGGCGAAT
GGGTTACCGCGCTCTGCCCCTACGGATCGACGGGGTGTCCCGACAACGAA
GGCGACTACGACGTTGTCATGCCTGAACCCATGAATGACACCTCCGGGTC
CGGCTACAAGGTCCGCGTAATGGACGTAAACGATGAGACCGATGTTGACT
GCTCGGACGAATTTTATCTCATGGCGTCGGACGAGTCACCTGTGGTTGGT
GACGAGGACGGGCCTACCCTGACCGTTACTTCCCCCGCTGAGGGCGACGT
GGCCATCGCTGGCGAAGAGTACACGGTTGAGGACGAGTGCGGCGAATGGG
TTACCGCGCTCTGCCCCTACGGATCGACGGGGTGTCCCGACAACGAAGGC
GACTACGACGTTGTCATGCCTGAACCCATGAATGACACCTCCGGGTCCGG
CTACAAGGTCCGCGTAATGGACGTAAACGATGAGACCGATGTTGACTGCT
CGGACGAATTTTATCTCATGGCGTCGGACGAGTCACCTGTGGTTGGTGAC
GAGGACGGGCCTACCCTGACCGTTACTTCCCCCGCTGAGGGCGACGTGGC
CATCGCTGGCGAAGAGTACACGGTTGAGTTCGACTACGACAACGGCGTGG
GCTCTAGTGTAGACCGATTCAAGATTGACCTCTACGAGTCCTCTGGCTCT
GGAGACTGCGGTACCTACGTCACCTCTATCTGCGACAAGCCCTCTATCGG
ATGCAAAGACTCAATTCGACTACGACAACGGCGTGGGCTCTAGTGTAGAC
CGATTCAAGATTGACCTCTACGAGTCCTCTGGCTCTGGAGACTGCGGTAC
CTACGTCACCTCTATCTGCGACAAGCCCTCTATCGGATGCAAAGACTCAA
TGGGCGACTACGACGTGGAGATCCCTGAGGACACGACGGCGGGCATGTAC
AAGATCCGAGTCGGGCGCTTCGAGGATGACTGGGCGACTACGACGTGGAG
ATCCCTGAGGACACGACGGCGGGCATGTACAAGATCCGAGTCGGGCGCTT
CGAGGATGAC
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