mRNA_H-elongata_contig58034.13277.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 361 bits (927), Expect = 4.590e-124 Identity = 176/235 (74.89%), Postives = 195/235 (82.98%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
M+RT + A+A ML A +L+V TPS+GL VI+DRTYTVEW S +RFEIDLYYCGS C+ED+CG+WVTALCPYG GCPDNEGDYD+VMPEPM TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A EYTVEFDYDNGVGSSVDRF IDLY + G GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT AG YKIRV RFEDD
Sbjct: 1 MTRTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDD 234
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 357 bits (915), Expect = 2.100e-122 Identity = 175/235 (74.47%), Postives = 196/235 (83.40%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
M+RT + A+A +ML A +LEV+TPS L+V++DRTYTVEW DSG RFEIDLY+CGS C+ED CG+WVTALCPYG GCPDNEGDYD+VMPEPM+ S SGYKVRVMDV+DE +DCSD FYLMAS+++P G E G LTVTSPAEGD A AGEEYTVEFDYDNGVGS VDRF IDLY + G GDCGTYVTSICDKPSIGCKDSMGDYDVEIP DT AG YKIRVGRFED+
Sbjct: 1 MARTGFVALACAMLG-AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDE 233
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 338 bits (868), Expect = 5.740e-115 Identity = 158/218 (72.48%), Postives = 183/218 (83.94%), Query Frame = 1
Query: 52 ARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
A +LEV+TP+EG +V++ R YTVEW S +R+EIDLYYCGS C+EDECG+WVTALCPYG GCPDNEGDYD+VMPEPM+ TSGSGYKVRV DV+D+ DCSDEFYLMA E+P GD GP +TVTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY ++GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED AGMY IRVG FEDD
Sbjct: 5 ASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDD 222
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 337 bits (863), Expect = 1.840e-114 Identity = 164/235 (69.79%), Postives = 189/235 (80.43%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
M RT + A+A ML A +LEV+TP+ G +V+S R YTVEW+ S RFEIDLYYC S C+EDECGEWVTALCPYG GCPDNEGDYD+VMPEPM+ TSGSGYKVRV DV+DE DCSDEFYLMA ++P D GP +TVTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY ++GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED AGMY IRVG FED+
Sbjct: 2 MVRTGFVALACGMLGV-ASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDE 235
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 317 bits (811), Expect = 8.920e-107 Identity = 157/236 (66.53%), Postives = 182/236 (77.12%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDS----MGDYDVEIPEDTTAGMYKIRVGRF 696
M+RT + A+A ML A +L+V TPS+GL VI+DRTYTVEW S +RFEIDLYYCGS C+ED+CG+WVTALCPYG GCPDNEGDYD+VMPEPM+ TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A EYTVEFDYDNGVGS VDRF IDLY + G GDCGTYV SICDKP+IGCKDS G + V+ G + + V R+
Sbjct: 2 MARTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 310 bits (793), Expect = 7.100e-104 Identity = 155/236 (65.68%), Postives = 188/236 (79.66%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYE-SSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
M+RT + A+A ML A +LEV++P+ G+ VI+DRTYTVEW G S SRFEIDLYYCGS+C+EDECG+WVTALCPYG+ GCPD +GDYD+VMPEPM TS SGYKV V D NDE+ + CS +F L+AS ++P G E G +LTVTSP++GD A+AG YTVE+DY+NG+GSS DRF IDLY +G+GDCGTYV ++CDKPSIGC DS GDYDVEIP DT AGMY +RVG F DD
Sbjct: 1 MARTAFAALAFGMLG-AANALEVVSPAAGISVIADRTYTVEWT-GTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAG-EVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDD 232
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 308 bits (789), Expect = 2.690e-103 Identity = 155/235 (65.96%), Postives = 185/235 (78.72%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
M+RT + A+A ML A +LEV++P+ G +V++D YTVEW SG R++IDLYYCGS C+EDECG+WVTALCPYG GCPD +GDYDVVMPEPM+ TS SGYKV V D +DE+D CS +F L+AS E+P D G ++VTSP++GD A+AG EYTVEFDYDNG+GSSV+RF IDLY S GSGDCGTYVT+ICDKPSIGCKDS GDYDV IP T +GMY IRVG FEDD
Sbjct: 1 MARTAFAALAFGMLG-AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDD 231
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 305 bits (780), Expect = 6.720e-102 Identity = 148/235 (62.98%), Postives = 188/235 (80.00%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
M+RT + AVA ML+ A +LEV++P G+ V++DR YTVEW G + RFEIDLYYC S+C++D CG+WVTALCPYG+ GCPD+ GDYD++MPEPM+ TS SGYKV V + DE+D+ CSD+F L+AS+++P G E G +LTVTSP++GD A+AGE YTVE+DY+NG GSS DRF +DLY G+GDCGTYVT++CD+PSIGC DS GDYDVEIP DT AGMY IRVG F+D+
Sbjct: 1 MARTAFAAVAFGMLS-AANALEVVSPDGGISVLADRAYTVEWT-GTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAG-EMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDE 231
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 279 bits (713), Expect = 1.630e-88 Identity = 135/173 (78.03%), Postives = 145/173 (83.82%), Query Frame = 1
Query: 187 VEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDD 705
VEDECGEWVTALCPYGS GCPDNEGDYD+VMPEPM+ TSGSGYKVRV DV+ D DCSDEFYLMAS E+PVVG D P L VTSP+ GD A AG EYTVEFDYDNGVGS VDRFKIDLY G+GDCGT+V ++CDK +IGCKDSMGDYDVEIPE GMY IRVGRFEDD
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDD 184
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 250 bits (639), Expect = 1.680e-80 Identity = 134/234 (57.26%), Postives = 157/234 (67.09%), Query Frame = 1
Query: 1 MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMNDTSGSGYKVRVMDVNDETDVDCSDEFYLMASDESPVVGDEDGPTLTVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYESSGSGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFED 702
M+RT + A+A ML +LEV +P+ G ++++ + TVEW G S RF+IDLYYCGS C+EDECG+WVTALCPYG GCPD +GDYDVVMPEPM+ TS SGYKV V D +DE+D+ CS EF L+AS FD+DNG GSSV+RF IDLY S GSGDCGTYVTSICDK SIGCKDS GDYDV IP DT +GMY IRVG FED
Sbjct: 1 MARTAFAALAFGMLG-AVNALEVTSPAAGDMIVAASSTTVEWT-GTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVAS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFED 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58034.13277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58034.13277.1 >prot_H-elongata_contig58034.13277.1 ID=prot_H-elongata_contig58034.13277.1|Name=mRNA_H-elongata_contig58034.13277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp MSRTIYFAVAVSMLARGARSLEVITPSEGLVVISDRTYTVEWNDGDSGSRback to top mRNA from alignment at H-elongata_contig58034:2..2935- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58034.13277.1 ID=mRNA_H-elongata_contig58034.13277.1|Name=mRNA_H-elongata_contig58034.13277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2934bp|location=Sequence derived from alignment at H-elongata_contig58034:2..2935- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58034:2..2935- >mRNA_H-elongata_contig58034.13277.1 ID=mRNA_H-elongata_contig58034.13277.1|Name=mRNA_H-elongata_contig58034.13277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig58034:2..2935- (Himanthalia elongata Himel1 dioecious)back to top |