mRNA_H-elongata_contig580.13272.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: D8LFL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFL1_ECTSI) HSP 1 Score: 213 bits (541), Expect = 2.610e-59 Identity = 100/139 (71.94%), Postives = 121/139 (87.05%), Query Frame = 1
Query: 247 DVILSDEKPCILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAGDPKAVDVKKRFNEASSEADVKLQATCFCARAAGA 663
++I+SDE PC+ KVGEAMLAGEIEYRKGNFE AFE LREAVRLD LLYDEPWGW+VP+ HALGALLLEQ+ ++EAT VFR++L+MY +NMW LLGL QCL+KAGDP+AV+ K+R++EASS A+ K ATCFCA+ AGA
Sbjct: 380 NLIVSDEAPCLFKVGEAMLAGEIEYRKGNFETAFEHLREAVRLDTSLLYDEPWGWMVPSRHALGALLLEQDHIQEATEVFRADLKMYPSNMWGLLGLSQCLDKAGDPEAVEAKRRYDEASSTAESKPAATCFCAKVAGA 518
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: A0A7Y2CJ48_9BACT (Tetratricopeptide repeat protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2CJ48_9BACT) HSP 1 Score: 142 bits (359), Expect = 2.070e-33 Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 1
Query: 277 ILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAGDPKAVD-VKKRFNEASSEADVKLQATCFC 645
IL V EAMLAGE+EYR+GN + AF LREAVR D L YDEPWGW+ PA HALGALLLEQ RVEEA VFR++L + N WAL GL +CL ++G D V+ + A+ ADV+++A+C+C
Sbjct: 420 ILLVAEAMLAGEVEYRRGNLDAAFRHLREAVRRDDALNYDEPWGWMQPARHALGALLLEQGRVEEAGEVFRADLRRHPKNAWALHGLEECLRRSGKESDADSVRAQLGAATVRADVRIKASCYC 543
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: A0A7X5VN10_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X5VN10_9BACT) HSP 1 Score: 137 bits (344), Expect = 8.290e-33 Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = 1
Query: 277 ILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAGDPKAVDVKK-RFNEASSEADVKLQATCFC 645
IL+V A+LAGE+EYRKGN+E AFE LR AV+LD +L YDEPWGW+ PA H LGALL EQ+R EEA +V+ +NL Y N WAL GL + L G + D + RF EA ++ADV + +C+C
Sbjct: 208 ILRVASAVLAGEVEYRKGNYETAFEHLRFAVQLDEQLNYDEPWGWMEPARHPLGALLTEQKRYEEAVSVYEANLARYPENGWALHGLAESLRGLGRTEEADAAQARFQEAWNDADVVIPGSCYC 331
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: UPI00190FA794 (tetratricopeptide repeat protein n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI00190FA794) HSP 1 Score: 139 bits (349), Expect = 4.700e-32 Identity = 66/133 (49.62%), Postives = 95/133 (71.43%), Query Frame = 1
Query: 250 VILSDEKPCILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAG-DPKAVDVKKRFNEASSEADVKLQATCFC 645
V+ ++ IL+V EAM+AGEI YRKGNF++AF +LR AV+LD + YDEPWGW+ PA HALGALL+EQ E+A VFR++L+ + N W+L GL +CL + G + +A ++ +F A+ +ADV + +CFC
Sbjct: 414 VLFNNRSRDILEVAEAMVAGEIAYRKGNFDEAFRQLRNAVKLDDAMNYDEPWGWMQPARHALGALLIEQRHYEQAEQVFRADLKKHPRNPWSLNGLAECLMELGRNDEATTIRNQFLSAAKQADVTIDRSCFC 546
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: UPI000B25CA76 (hypothetical protein n=1 Tax=Marinifilum fragile TaxID=570161 RepID=UPI000B25CA76) HSP 1 Score: 137 bits (346), Expect = 1.610e-31 Identity = 68/133 (51.13%), Postives = 96/133 (72.18%), Query Frame = 1
Query: 250 VILSDEKPCILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAG-DPKAVDVKKRFNEASSEADVKLQATCFC 645
++ ++ IL V M+AGEI YRKG++E +FE+LR+AV+LD L YDEPWGW+ PA HALGALL+EQER EEA +V+R++L+ + N+WAL GL + LEK G + +A +F AS+ ADVK+ +C+C
Sbjct: 441 ILFNNTSRDILGVANKMMAGEIAYRKGDYEFSFEQLRQAVQLDDALNYDEPWGWMQPARHALGALLMEQERFEEAESVYRNDLKRHPKNLWALHGLTESLEKQGKEEEAKKYHSQFEIASARADVKVDRSCYC 573
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: UPI001E33D27B (tetratricopeptide repeat protein n=1 Tax=Stieleria sp. JC731 TaxID=2894195 RepID=UPI001E33D27B) HSP 1 Score: 137 bits (344), Expect = 2.230e-31 Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 1
Query: 250 VILSDEKPCILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAGD-PKAVDVKKRFNEASSEADVKLQATCFC 645
++ +++ IL V EAM+AGEI YR+GNFE AF LR AV+LD + YDEPWGW+ PA HALGALLLEQ E+A VFR++L+ + N W+L GL +CL + G +A ++K+F A+ ADV + +CFC
Sbjct: 414 ILFNNKSRDILGVAEAMVAGEIAYRRGNFETAFRHLRNAVKLDDAMNYDEPWGWMQPARHALGALLLEQRHYEQADPVFRADLKRHPKNPWSLNGLAECLMEMGKIDEAATIRKQFISATEHADVTIDRSCFC 546
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: A0A7S3YYF3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYF3_9EUKA) HSP 1 Score: 137 bits (345), Expect = 2.660e-31 Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = 1
Query: 277 ILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAGDPKAV--DVKKRFNEASSEADVKLQATCFCARAAGAKTTSAMANKE 693
IL VGE +L GEI YR+G F++AFE LREAV D L YDEPWGW+ P HALGALLLE +R +EA +VF ++LE + NN+WAL GL + G+ K V + ++R +EAS+ ADV + A C CA A+++ A ++
Sbjct: 414 ILNVGEKLLRGEILYREGKFDQAFEALREAVAADDGLNYDEPWGWMQPTRHALGALLLESKRFQEAKHVFEADLEKWPNNLWALKGLAEIARVTGESKEVFEEFRRRADEASARADVSIGAACLCANGVKAESSGGDAAEK 554
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: A0A7S2XHI4_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XHI4_9EUKA) HSP 1 Score: 129 bits (323), Expect = 3.230e-31 Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = 1
Query: 253 ILSDEKPC-ILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAGD-PKAVDVKKRFNEASSEADVKLQATCFCA 648
+ E C IL V + ML+GEI+YR G++EKAF+ L EAVR D L YDEPWGW+ PA HALGALL EQ+R + A VF ++L + N+W+L+GL +C E G+ +A V +RF AS DV ++A C CA
Sbjct: 13 VFDPEGTCGILNVAQKMLSGEIKYRSGDYEKAFQDLEEAVRRDDALPYDEPWGWMQPARHALGALLAEQKRYKVAREVFLTDLRKWPENLWSLMGLRRCEEALGNNEEAKKVHERFKVASKRLDVPMEAPCACA 146
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: A0A3D4NUR4_PSESP (Uncharacterized protein (Fragment) n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A3D4NUR4_PSESP) HSP 1 Score: 126 bits (317), Expect = 3.490e-31 Identity = 65/130 (50.00%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 286 VGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEM---------YKNNMWALLGLYQCLEKAG-DPKAVDVKKRFNEASSEADVKLQATCFC 645
V AML GEIEYRKGN++ AF LR+A+ LD L YDEPWGW+ P HALGALLLEQ RVEEA +R++L + + +N+W+L G +CL++ G D +A V+ R + A + ADV++ A+CFC
Sbjct: 1 VAGAMLRGEIEYRKGNYDSAFAHLRQALSLDDNLPYDEPWGWMQPVRHALGALLLEQGRVEEALQAYRADLGLDNTLSRAAWHLDNVWSLHGYVECLKRLGRDAEAAAVQTRLDLAMARADVEITASCFC 130
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Match: A0A255R918_9BACT (Uncharacterized protein n=2 Tax=Rhodopirellula sp. MGV TaxID=2023130 RepID=A0A255R918_9BACT) HSP 1 Score: 135 bits (341), Expect = 5.120e-31 Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = 1
Query: 250 VILSDEKPCILKVGEAMLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLLEQERVEEATNVFRSNLEMYKNNMWALLGLYQCLEKAGD-PKAVDVKKRFNEASSEADVKLQATCFC 645
++ +++ IL V EAM+AGEI YRKGNFE AF+ LR AV+LD + YDEPWGW+ PA HALGALL+EQ E+A VFR++L+ + N W+L GL +CL + G +A ++ +F A+ ADV + +CFC
Sbjct: 404 ILFNNKSRDILGVAEAMVAGEIAYRKGNFEMAFQHLRNAVKLDDAMNYDEPWGWMQPARHALGALLIEQRHFEQAEPVFRADLKRHPKNPWSLNGLAECLMELGKLDEAATIRMQFLSAAERADVTIDRSCFC 536 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig580.13272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig580.13272.1 >prot_H-elongata_contig580.13272.1 ID=prot_H-elongata_contig580.13272.1|Name=mRNA_H-elongata_contig580.13272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp MLAGEIEYRKGNFEKAFERLREAVRLDRELLYDEPWGWLVPAEHALGALLback to top mRNA from alignment at H-elongata_contig580:2..2315- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig580.13272.1 ID=mRNA_H-elongata_contig580.13272.1|Name=mRNA_H-elongata_contig580.13272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2314bp|location=Sequence derived from alignment at H-elongata_contig580:2..2315- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig580:2..2315- >mRNA_H-elongata_contig580.13272.1 ID=mRNA_H-elongata_contig580.13272.1|Name=mRNA_H-elongata_contig580.13272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig580:2..2315- (Himanthalia elongata Himel1 dioecious)back to top |