mRNA_H-elongata_contig57978.13270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57978.13270.1
Unique NamemRNA_H-elongata_contig57978.13270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.170e-14
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   19 HRSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            HRSVS G V+  GG ++WFSR +K  A +++E++YVA+A ++ E+ FLRQV   M+P   +  I + EDN+G I+I  N  ++
Sbjct:  139 HRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVAIANVLKEVLFLRQVWRFMLPDAGIPCIPVFEDNQGAIQIAHNPITN 221
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.130e-13
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            RSVS G V   GG +SWFSR +K    +++E+EYVAL ++V E+ FLRQ+   M+P + +  I + EDN+G I++ +N  S+
Sbjct:  173 RSVSGGIVTCGGGAVSWFSRTQKYVTLSTTETEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISN 254
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5K7P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-13
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            RSVS G VM  GG ++WFSR++K  + +++ESEYVA+A++  E+ FLRQV   M+P   +  I + EDN+G IKI  N  ++
Sbjct:  196 RSVSGGLVMCGGGCVTWFSRMQKCFSLSTTESEYVAIADVSKEVLFLRQVCRFMLPDASMPCIPVFEDNQGAIKIGHNPITN 277
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5KD14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD14_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.440e-13
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKI--TRNRFSSR 267
            RSVS G VM  GG ++WFSR +K    +++E+EYVA+A+++ E+ FLRQV   M+P   +  I + EDN+G I+I  TR+R  +R
Sbjct:  114 RSVSGGLVMREGGGVTWFSRTKKCVTLSTTEAEYVAIADVMKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIAHTRSRTPTR 198
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.760e-13
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            RSVS G V   GG +SWFSR +K    +++E+EYVAL ++VN++ FL Q+   M+P + +  I + EDN+G I++ +N  S+
Sbjct: 1194 RSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQNPISN 1275
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.780e-13
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPP-IDVAIKIHEDNEGEIKITRNRFS 261
            RSVS G VM AGG I+WFS+ +     ++++SEYVA+A+M  E+ FLRQV   M+P  +   I ++EDNEG I+I ++  S
Sbjct:  617 RSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPIS 697
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.330e-13
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            RSVS G VM  GG ++WFSR +K    +++E+EYVA+A+++ E+ FLRQV   M+P   +  I + EDN+G I+I  N  ++
Sbjct:  183 RSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITN 264
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.640e-13
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            RSVS G VM  GG ++WFSR +K    +++E+EYVA+A+++ E+ FLRQV   M+P   +  I + EDN+G I+I  N  ++
Sbjct:  238 RSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITN 319
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.670e-13
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            RSVS G VM  GG ++WFSR +K    +++E+EYVA+A+++ E+ FLRQV   M+P   +  I + EDN+G I++  N  ++
Sbjct:  155 RSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITN 236
[Close]
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.400e-13
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   22 RSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNELRFLRQVKELMIPPIDV-AIKIHEDNEGEIKITRNRFSS 264
            RSVS G VM  GG ++WFSR +K    +++E+EYVA+A+++ E+ FLRQV   M+P   +  I + EDN+G I+I  N  ++
Sbjct:  300 RSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITN 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57978.13270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMV5_9PHAE5.170e-1443.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X8_9PHAE1.130e-1343.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P1_9PHAE1.310e-1346.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD14_9PHAE2.440e-1345.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6V8_9PHAE3.760e-1342.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWA6_9PHAE3.780e-1346.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP70_9PHAE4.330e-1343.90Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE5.640e-1343.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8K2_9PHAE5.670e-1342.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE6.400e-1343.90Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57978contigH-elongata_contig57978:680..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog164328.Phyra85518
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.500048-CDS-H-elongata_contig57978:679..9461622930940.500048-CDS-H-elongata_contig57978:679..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57978 680..946 +
1691679633.4111726-CDS-H-elongata_contig57978:679..9461691679633.4111726-CDS-H-elongata_contig57978:679..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57978 680..946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57978.13270.1prot_H-elongata_contig57978.13270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57978 680..946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57978.13270.1

>prot_H-elongata_contig57978.13270.1 ID=prot_H-elongata_contig57978.13270.1|Name=mRNA_H-elongata_contig57978.13270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GTCPDTHRSVSEGAVMMAGGVISWFSRVRKVTAAASSESEYVALAEMVNE
LRFLRQVKELMIPPIDVAIKIHEDNEGEIKITRNRFSSR
back to top

mRNA from alignment at H-elongata_contig57978:680..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57978.13270.1 ID=mRNA_H-elongata_contig57978.13270.1|Name=mRNA_H-elongata_contig57978.13270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=268bp|location=Sequence derived from alignment at H-elongata_contig57978:680..947+ (Himanthalia elongata Himel1 dioecious)
GGCACCTGCCCGGACACGCATCGCTCAGTGTCGGAGGGGGCGGTGATGAT
GGCTGGCGGGGTCATTAGTTGGTTCTCACGAGTGCGAAAGGTAACGGCAG
CGGCGTCGTCCGAATCGGAATACGTCGCGCTGGCTGAGATGGTAAACGAG
TTGCGTTTCCTACGACAGGTCAAGGAGCTCATGATCCCCCCAATCGACGT
CGCCATCAAGATACACGAGGACAACGAAGGCGAAATAAAGATAACGAGAA
ACCGCTTCAGCAGTCGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57978:680..947+

>mRNA_H-elongata_contig57978.13270.1 ID=mRNA_H-elongata_contig57978.13270.1|Name=mRNA_H-elongata_contig57978.13270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig57978:680..947+ (Himanthalia elongata Himel1 dioecious)
GGCACCTGCCCGGACACGCATCGCTCAGTGTCGGAGGGGGCGGTGATGAT
GGCTGGCGGGGTCATTAGTTGGTTCTCACGAGTGCGAAAGGTAACGGCAG
CGGCGTCGTCCGAATCGGAATACGTCGCGCTGGCTGAGATGGTAAACGAG
TTGCGTTTCCTACGACAGGTCAAGGAGCTCATGATCCCCCCAATCGACGT
CGCCATCAAGATACACGAGGACAACGAAGGCGAAATAAAGATAACGAGAA
ACCGCTTCAGCAGTCGAGGCACCTGCCCGGACACGCATCGCTCAGTGTCG
GAGGGGGCGGTGATGATGGCTGGCGGGGTCATTAGTTGGTTCTCACGAGT
GCGAAAGGTAACGGCAGCGGCGTCGTCCGAATCGGAATACGTCGCGCTGG
CTGAGATGGTAAACGAGTTGCGTTTCCTACGACAGGTCAAGGAGCTCATG
ATCCCCCCAATCGACGTCGCCATCAAGATACACGAGGACAACGAAGGCGA
AATAAAGATAACGAGAAACCGCTTCAGCAGTCGA
back to top