mRNA_H-elongata_contig57976.13269.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57976.13269.1
Unique NamemRNA_H-elongata_contig57976.13269.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57976.13269.1 vs. uniprot
Match: D7FQU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.130e-16
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 GAIYNFLSGRRKRTNDWRPAYPLPSTPEKPPSVSGCISSNSLPKRSLNGMKSDCMMNRWTASFNVDRSRFQSISVMCEQRLRK 249
            G+I +  S RRKR +DWRPA  LP++    PS  G + + S    S   M SDC+MNRWTASF+ DR+RFQSISVMCEQRLRK
Sbjct:   24 GSINSKSSLRRKRKHDWRPANRLPTSHGVSPSFPGRLKAAS--PWSERDMSSDCVMNRWTASFDADRARFQSISVMCEQRLRK 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57976.13269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQU2_ECTSI5.130e-1657.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57976contigH-elongata_contig57976:22..2437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size819
Cds size819
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.339177-CDS-H-elongata_contig57976:21..1081622930940.339177-CDS-H-elongata_contig57976:21..108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 22..108 -
1691679633.3417192-CDS-H-elongata_contig57976:21..1081691679633.3417192-CDS-H-elongata_contig57976:21..108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 22..108 -
1622930940.3570273-CDS-H-elongata_contig57976:473..5401622930940.3570273-CDS-H-elongata_contig57976:473..540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 474..540 -
1691679633.3506103-CDS-H-elongata_contig57976:473..5401691679633.3506103-CDS-H-elongata_contig57976:473..540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 474..540 -
1622930940.3706594-CDS-H-elongata_contig57976:987..11121622930940.3706594-CDS-H-elongata_contig57976:987..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 988..1112 -
1691679633.3603096-CDS-H-elongata_contig57976:987..11121691679633.3603096-CDS-H-elongata_contig57976:987..1112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 988..1112 -
1622930940.3856246-CDS-H-elongata_contig57976:1249..13901622930940.3856246-CDS-H-elongata_contig57976:1249..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 1250..1390 -
1691679633.3696008-CDS-H-elongata_contig57976:1249..13901691679633.3696008-CDS-H-elongata_contig57976:1249..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 1250..1390 -
1622930940.4018095-CDS-H-elongata_contig57976:1743..18931622930940.4018095-CDS-H-elongata_contig57976:1743..1893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 1744..1893 -
1691679633.3788679-CDS-H-elongata_contig57976:1743..18931691679633.3788679-CDS-H-elongata_contig57976:1743..1893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 1744..1893 -
1622930940.4217067-CDS-H-elongata_contig57976:2042..21181622930940.4217067-CDS-H-elongata_contig57976:2042..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 2043..2118 -
1691679633.3927524-CDS-H-elongata_contig57976:2042..21181691679633.3927524-CDS-H-elongata_contig57976:2042..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 2043..2118 -
1622930940.4463024-CDS-H-elongata_contig57976:2264..24371622930940.4463024-CDS-H-elongata_contig57976:2264..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 2265..2437 -
1691679633.4026122-CDS-H-elongata_contig57976:2264..24371691679633.4026122-CDS-H-elongata_contig57976:2264..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57976 2265..2437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57976.13269.1prot_H-elongata_contig57976.13269.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57976 22..2437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57976.13269.1

>prot_H-elongata_contig57976.13269.1 ID=prot_H-elongata_contig57976.13269.1|Name=mRNA_H-elongata_contig57976.13269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp
GAIYNFLSGRRKRTNDWRPAYPLPSTPEKPPSVSGCISSNSLPKRSLNGM
KSDCMMNRWTASFNVDRSRFQSISVMCEQRLRKACVGTEHAPMPDEFRTM
AACEALVIMLPVLHRYRSLLKLIIREILRSVYEDSDLVMDQFEAWLHADS
QEQIFVRAPAEAMLLTSKPYFVRCRELRSEVNGLQMAIIKGKEHEGILLS
SLASARSSIISMIGKDYLAIKRFMFWNWKAAVNNGVVLRRRFQRARLRIW
FWGFRIRLMKIRATETKYQLGLR
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mRNA from alignment at H-elongata_contig57976:22..2437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57976.13269.1 ID=mRNA_H-elongata_contig57976.13269.1|Name=mRNA_H-elongata_contig57976.13269.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2416bp|location=Sequence derived from alignment at H-elongata_contig57976:22..2437- (Himanthalia elongata Himel1 dioecious)
GGTGCGATTTATAATTTCTTATCGGGCAGGAGGAAGCGAACGAACGACTG
GCGACCTGCTTATCCGCTGCCCTCCACACCAGAGAAACCGCCATCTGTGT
CTGGATGCATCAGTTCGAATTCGCTGCCAAAGCGGTCCTTGAATGGGATG
AAATCGGACTGCATGATGAACAGGTGTTAAAGCTATGGCATCGTTGGACC
TCATATATTTGATTTCGAGGCATGGTTGATTCGATTGGGCGTGGAGAAAT
TATAATACTATTACTACGACCTTTAAAACGATTAGGAAATGAAGCTAGAG
AATCGTGCATCCTCTGCAGGTGGACAGCAAGCTTCAATGTCGACCGAAGT
CGATTCCAGTCCATCTCGGTGATGTGCGAACAGCGTTTACGAAAGGTTTG
TGAATTTTTAATCTTAACTATATGACGCGGGATAGGCCGAGGTGTTTTTT
CCGAAGACCGGATTTGAAAACCTGCACCTTGTTCAAGGTAATGTGCAACT
AAGACGTAACGCCTGAACGAGTATCAACTTATAACTCAAAACAGGCTTGT
GTCGGGACGGAACACGCTCCCATGCCGGACGAGTTCCGCACCATGGCAGC
TTGCGAGGCTCTTGTAATCATGCTCCCCGTTCTTCACCGATACCGTTCGC
TCTTGAAGCTTATCATCAGAGAAATCCTTCGTTCGGTGTACGAGGTATGG
CTGGGAGTATGATTCACTCTCAGTTTCCACTAGTTCTCTCGCTTTGTCGG
CCCATGTGCCACAACGTCCACAAAAGCGCCTAACGATGCTCGTGGTACTA
TAATAGAAAATTGACCCTTCAAATCGCCTGGAGCACCCTCTAACACAAAC
GGTAAGCTTCGGGCCAACGAAGCTGTTGCGCACAGTCTGGTGTTGAAATC
TACATGCAGCGTACTTGCGTCTTAAGATGAACACATTAACAGTAGGAAAT
ATAACACCATAGCGTAGGTCGGGGACGCAAGCAGTTCCGATCTCTACGCC
CTCCCCAAATGCGATGCCAAAAATCTATCATATTCGTTGGATGGCAGGAT
TCCGACTTGGTGATGGACCAATTCGAAGCTTGGCTACATGCCGATTCTCA
AGAGCAAATATTTGTCCGAGCGCCCGCGGAGGCCATGCTGCTTACGAGCA
AACCCTATTTCGTACGATGTCGAGAGCTTCGATCAGAGGTTTGAAAAGCG
ATTGTATTTGCCGGTCGCTGCCGCAATTCACCCTCTGTACGGCAAGGAAA
AGGTAGCTGCGCGAATAGTCGTCCGATACAACAAAAAACACCCAGCCCCC
TTGGACAACGTCCCCCCTGAAACAGGTTAACGGACTTCAAATGGCAATAA
TTAAGGGGAAGGAGCACGAGGGCATCCTCCTCAGTAGCCTTGCAAGTGCA
AGGAGTTCGATTATATCTATGATTGGGAAGGACTATTTAGCAATTAAGAG
GTGATAATATAAAAGTAGCGTTGGTGTGAAGGAATGGCCGGGCATGTGGA
AGCTTTGTGTCCCGATTGATGGGCCCCGTATGCCTTCAGAAATTCTCAGG
TATGGGCCAACTTTACCAAGGGAATAGGCGTTTTAATGTCCCCACTCGAT
TTTCCCTCTCCTACGAAGTACGTACCAAGCGATAGTAAATATTGTGTTTT
GGGGAAGAATGTGTTGAGATATTTCTAAAGACGTACTTGTAGCTTAGTAC
GTTGATGTTGCTAGTGCTGTCGAAAATATGTTGGGGGAGGTGTATATCCT
CAATAATGTATTATTCATGACAGGTGGTTATTCGTCTACGACATGCAATT
AGTTAGGCACTAATAATACTGTCACATTTTATGTGAATGCAATCGCCGGG
AAGCAACTAACTGTAATACACCGCCCTTCACCCTGGCTACTGGTCAGGTT
TATGTTTTGGAACTGGAAGGCAGCGGTCAACAATGGTGTTGTGTTGCGAA
GACGTTTTCAACGAGTGAGTCTTCGAGATTCGCAAACAATATTAAACACA
TCAAACCAAAGGGAAAACACTTGAGGGGACCACGCCCCTTACACTAGCGT
TTCGAAACCCAATCCTCTCCTTGCATTTTTTTTCTTTTAACATAAAATAA
TATCGCTTCGTGGAAGATATTGAGGTAATTCAAACCTTAACTCTCGATGG
TATTTTCGTCTCCCGTTCTTCCCTGTCAATGCCGCTAGTAAAAGTTGCGG
ACTTACCTACGTAGCGCACGCGGGCGTTATTCGGATCCACGCATAGCCCC
GCCGCCCCGCAGTGATTTCTATATTTCTCACCTACTGCCGATTCGCCATA
TTCCCGTGGTGCTACTGTACCGACGCAAGGCACGTCTGAGGATCTGGTTC
TGGGGCTTTCGGATCCGCCTAATGAAGATCAGGGCTACGGAGACCAAATA
TCAGCTGGGGTTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig57976:22..2437-

>mRNA_H-elongata_contig57976.13269.1 ID=mRNA_H-elongata_contig57976.13269.1|Name=mRNA_H-elongata_contig57976.13269.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at H-elongata_contig57976:22..2437- (Himanthalia elongata Himel1 dioecious)
GGTGCGATTTATAATTTCTTATCGGGCAGGAGGAAGCGAACGAACGACTG
GCGACCTGCTTATCCGCTGCCCTCCACACCAGAGAAACCGCCATCTGTGT
CTGGATGCATCAGTTCGAATTCGCTGCCAAAGCGGTCCTTGAATGGGATG
AAATCGGACTGCATGATGAACAGGGTGCGATTTATAATTTCTTATCGGGC
AGGAGGAAGCGAACGAACGACTGGCGACCTGCTTATCCGCTGCCCTCCAC
ACCAGAGAAACCGCCATCTGTGTCTGGATGCATCAGTTCGAATTCGCTGC
CAAAGCGGTCCTTGAATGGGATGAAATCGGACTGCATGATGAACAGGTGG
ACAGCAAGCTTCAATGTCGACCGAAGTCGATTCCAGTCCATCTCGGTGAT
GTGCGAACAGCGTTTACGAAAGGTGGACAGCAAGCTTCAATGTCGACCGA
AGTCGATTCCAGTCCATCTCGGTGATGTGCGAACAGCGTTTACGAAAGGC
TTGTGTCGGGACGGAACACGCTCCCATGCCGGACGAGTTCCGCACCATGG
CAGCTTGCGAGGCTCTTGTAATCATGCTCCCCGTTCTTCACCGATACCGT
TCGCTCTTGAAGCTTATCATCAGAGAAATCCTTCGTTCGGTGTACGAGGC
TTGTGTCGGGACGGAACACGCTCCCATGCCGGACGAGTTCCGCACCATGG
CAGCTTGCGAGGCTCTTGTAATCATGCTCCCCGTTCTTCACCGATACCGT
TCGCTCTTGAAGCTTATCATCAGAGAAATCCTTCGTTCGGTGTACGAGGA
TTCCGACTTGGTGATGGACCAATTCGAAGCTTGGCTACATGCCGATTCTC
AAGAGCAAATATTTGTCCGAGCGCCCGCGGAGGCCATGCTGCTTACGAGC
AAACCCTATTTCGTACGATGTCGAGAGCTTCGATCAGAGGATTCCGACTT
GGTGATGGACCAATTCGAAGCTTGGCTACATGCCGATTCTCAAGAGCAAA
TATTTGTCCGAGCGCCCGCGGAGGCCATGCTGCTTACGAGCAAACCCTAT
TTCGTACGATGTCGAGAGCTTCGATCAGAGGTTAACGGACTTCAAATGGC
AATAATTAAGGGGAAGGAGCACGAGGGCATCCTCCTCAGTAGCCTTGCAA
GTGCAAGGAGTTCGATTATATCTATGATTGGGAAGGACTATTTAGCAATT
AAGAGGTTAACGGACTTCAAATGGCAATAATTAAGGGGAAGGAGCACGAG
GGCATCCTCCTCAGTAGCCTTGCAAGTGCAAGGAGTTCGATTATATCTAT
GATTGGGAAGGACTATTTAGCAATTAAGAGGTTTATGTTTTGGAACTGGA
AGGCAGCGGTCAACAATGGTGTTGTGTTGCGAAGACGTTTTCAACGAGTT
TATGTTTTGGAACTGGAAGGCAGCGGTCAACAATGGTGTTGTGTTGCGAA
GACGTTTTCAACGAGCACGTCTGAGGATCTGGTTCTGGGGCTTTCGGATC
CGCCTAATGAAGATCAGGGCTACGGAGACCAAATATCAGCTGGGGTTGAG
GGCACGTCTGAGGATCTGGTTCTGGGGCTTTCGGATCCGCCTAATGAAGA
TCAGGGCTACGGAGACCAAATATCAGCTGGGGTTGAGG
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