mRNA_H-elongata_contig57957.13268.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig57957.13268.1
Unique Name	mRNA_H-elongata_contig57957.13268.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig57957.13268.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.310e-53
Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 1

Query:  355 QAVDPEIKVVPFEVQEPSLGAAVVGHVTILEGSCYVWASTEGSGAQGSLAAAVGTRFGGGMPTATPLLDGSGRGEAGGGGVSISMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEARVIALLRTE 729
            +AV PE+KVV F+V+EP+LGA+VVGHV +L GSCYVWA+TEGS AQGSLAAAVGTRF GGMPTATPLL G G GEAGGGGV +SMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEA+V+ALL+ E
Sbjct:  233 EAVLPELKVVSFDVREPTLGASVVGHVVVLAGSCYVWAATEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGGGGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 357

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BLAST of mRNA_H-elongata_contig57957.13268.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.900e-52
Identity = 100/125 (80.00%), Postives = 113/125 (90.40%), Query Frame = 1

Query:  355 QAVDPEIKVVPFEVQEPSLGAAVVGHVTILEGSCYVWASTEGSGAQGSLAAAVGTRFGGGMPTATPLLDGSGRGEAGGGGVSISMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEARVIALLRTE 729
            +AV PE+K+V F+V+EP+LGA+VVGHV +L GSCYVWA+TEGS AQGSLAAAVGTRF GGMPTATPLL G G GEAG GGV +SMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEA+V+ALL+ E
Sbjct:  238 EAVLPELKIVSFDVREPTLGASVVGHVVVLAGSCYVWATTEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGEGGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 362

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BLAST of mRNA_H-elongata_contig57957.13268.1 vs. uniprot
Match: A0A485KKL7_9STRA (Aste57867_8572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.310e-9
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 1

Query:  433 VTILEGSCYVWASTEGSGAQ-GSLAAAVGTRFGGGMPTATPLLDGSGRGEAGGGGVSISMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEARVIALLRTE 729
            + +L  +C+VW   +GS A+ GS++ AV TR+   +P A+ L+ GS      G  V   MAQRL  RTG+ VFVSC+L ED   L A VE +++A LR E
Sbjct:   39 IWLLPNACFVWIGLDGSPARMGSMSTAVKTRYDP-LPLASSLIGGS------GDEVEQQMAQRLVLRTGKQVFVSCNLPEDDMELCAFVERQIVARLREE 131

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BLAST of mRNA_H-elongata_contig57957.13268.1 vs. uniprot
Match: A0A6G0WHC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHC5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.900e-5
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 1

Query:  433 VTILEGSCYVWASTEGSGAQ-GSLAAAVGTRFGGGMPTATPLLDGSGRGEAGGGGVSISMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEARVIALLRTEG 732
            + +L  +C+VW   + +    GS++ AV T++   +P A+ L+        GG  +   MAQRL  RTGR VFVSC+L +D   L A +E  +I  L  E 
Sbjct:   34 IWLLANACFVWIGLDSTAVSLGSMSTAVKTKYDP-LPLASSLI-------GGGNEMEQQMAQRLVLRTGRQVFVSCNLPDDDMELGAFIERAIIKRLNQES 126

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig57957.13268.1 vs. uniprot

BLAST of mRNA_H-elongata_contig57957.13268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7G2Q5_ECTSI	1.310e-53	81.60	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K9L5_9PHAE	2.900e-52	80.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A485KKL7_9STRA	1.310e-9	44.00	Aste57867_8572 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A6G0WHC5_9STRA	2.900e-5	35.64	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig57957	contig	H-elongata_contig57957:378..2564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1930
Cds size	690
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig57957.13268.1	prot_H-elongata_contig57957.13268.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig57957 423..1350 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930940.221288-UTR-H-elongata_contig57957:377..422	1622930940.221288-UTR-H-elongata_contig57957:377..422	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig57957 378..422 +
1691679633.2901194-UTR-H-elongata_contig57957:377..422	1691679633.2901194-UTR-H-elongata_contig57957:377..422	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig57957 378..422 +
1622930940.282752-UTR-H-elongata_contig57957:1350..2274	1622930940.282752-UTR-H-elongata_contig57957:1350..2274	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig57957 1351..2274 +
1691679633.3199742-UTR-H-elongata_contig57957:1350..2274	1691679633.3199742-UTR-H-elongata_contig57957:1350..2274	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig57957 1351..2274 +
1622930940.2987678-UTR-H-elongata_contig57957:2293..2564	1622930940.2987678-UTR-H-elongata_contig57957:2293..2564	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig57957 2294..2564 +
1691679633.3296387-UTR-H-elongata_contig57957:2293..2564	1691679633.3296387-UTR-H-elongata_contig57957:2293..2564	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig57957 2294..2564 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930940.2407079-CDS-H-elongata_contig57957:422..456	1622930940.2407079-CDS-H-elongata_contig57957:422..456	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig57957 423..456 +
1691679633.301899-CDS-H-elongata_contig57957:422..456	1691679633.301899-CDS-H-elongata_contig57957:422..456	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig57957 423..456 +
1622930940.2683659-CDS-H-elongata_contig57957:694..1350	1622930940.2683659-CDS-H-elongata_contig57957:694..1350	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig57957 695..1350 +
1691679633.3117406-CDS-H-elongata_contig57957:694..1350	1691679633.3117406-CDS-H-elongata_contig57957:694..1350	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig57957 695..1350 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig57957:378..2564+
coding sequence from alignment at H-elongata_contig57957:378..2564+

protein sequence of mRNA_H-elongata_contig57957.13268.1

>prot_H-elongata_contig57957.13268.1 ID=prot_H-elongata_contig57957.13268.1|Name=mRNA_H-elongata_contig57957.13268.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MRDMEEAAKNIGPYRIRLVTGDVEDKPVVSGRRIMGRLPGIKSMFSMTRK
RSTSSLVAKQSLRSQSDLRPQEPLAADLPIPPHQSAGEEEAFVASMGGPK
NVVQAVDPEIKVVPFEVQEPSLGAAVVGHVTILEGSCYVWASTEGSGAQG
SLAAAVGTRFGGGMPTATPLLDGSGRGEAGGGGVSISMAQRLCKRTGRVV
FVSCDLSEDSQILVAAVEARVIALLRTEG*

mRNA from alignment at H-elongata_contig57957:378..2564+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig57957.13268.1 ID=mRNA_H-elongata_contig57957.13268.1|Name=mRNA_H-elongata_contig57957.13268.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2187bp|location=Sequence derived from alignment at H-elongata_contig57957:378..2564+ (Himanthalia elongata Himel1 dioecious)
GAGATATTCGATGAGGATACCACCCGGCAGATCAAGGAGGAGCATATGAG
GGACATGGAGGAGGCCGCCAAGAACATAGGTGAGAATGGGCGTGGGCCGC
ACGATAACGGTTTTCATGGAATGCTCGTTTGCGGGCAGAAGCAACTCCTA
TTTATCACCTCTTCAAAACATGCTCAAGTCACTATATTGTTTTTTCCTTA
CACCCAACCTCACTCCCACCCATCCTCTTGTCTCTGAAGATAAATATTTG
CGCGCGTGAGCTAGATTTTTTTTTGAGGTTTGCTTTCATGGTTTCAAACT
GATCGTGCCATAATCAGGCCCTTACAGGATTAGGCTCGTGACTGGAGACG
TTGAGGACAAACCGGTGGTGTCGGGAAGAAGGATAATGGGTAGATTACCG
GGGATCAAGTCGATGTTCTCGATGACGAGAAAGCGATCAACATCTTCCCT
TGTCGCAAAGCAGAGCTTGCGAAGCCAGTCTGATTTGCGGCCGCAAGAAC
CGTTAGCGGCTGATCTACCCATCCCGCCCCATCAATCAGCAGGGGAAGAA
GAGGCGTTTGTGGCGTCGATGGGGGGACCTAAAAATGTGGTTCAGGCGGT
GGATCCCGAGATAAAGGTGGTACCGTTTGAGGTTCAGGAGCCATCCCTCG
GCGCTGCGGTTGTCGGCCATGTGACCATCCTGGAAGGTTCTTGCTACGTG
TGGGCGTCGACCGAAGGATCGGGGGCGCAGGGATCGTTAGCCGCGGCGGT
GGGCACGCGCTTTGGTGGGGGCATGCCGACGGCGACGCCATTGCTAGACG
GTTCGGGAAGGGGCGAGGCTGGAGGCGGGGGGGTGAGCATCAGCATGGCG
CAGAGACTTTGCAAGCGCACCGGCCGGGTGGTGTTCGTGAGCTGCGATCT
CTCGGAGGATTCGCAGATTTTGGTTGCGGCGGTCGAGGCGAGGGTGATTG
CCTTGCTCAGGACGGAGGGTTGATCATGCGTCGTTACACTCGAAGAAACT
TCCCCTCGTCGAGAACCGCTGAATTTTGATGAACCAAGAACTTACCGTCG
TCGACAACTGCTATCTTTTTGTAGAGATTCTTCTTAAACTGGAAACTCAT
ATGTTCGCTCTAGAGTTTTATCCACGAATTTGTTCCAACAGTCAAGTCCG
AAATAGTAATTGGTTATTGGTATTCGACCCACAATGCGATAGCTTTAATC
GCCGTACCCAGACTGCCCAAAACGCCTGAATGACGCGTGGCTACTTTCTA
CATATATGTCCTCTAGACCGCAAGGATTCTGGTGTCCATTTGATTGTATC
CGGGAGGTTCAGGCAATCAACTTGCGTCGAGAGAAGCTTTTGAAGAAGTG
GTGCGGGCGGTAGCTTTCCGTTACCTATGTTTAGAGGGTCCGGGAGGTGT
ATTAATATTAATAGTATAATCCACGCACTGCTTCTCAAGCGATGGCCAAC
GAGAGTTTCGTGCGAAGCGGTTTAGAGCTTGTTTATATGGATACTTCGCC
CTGGGCTTAGATTTCCACTTAAAAGAGTGTGTAGAAAAGGGATACAGGAG
GGTCGATGAGAGGGTATACAGCGATGCGCGTGTTATTTGATTGATGATTG
ATTGGTTGGAATGAAGAGAGGCATAGGATTCGAGCTGCCTGGTACCTAAC
TTACCATATGTCGCTTGAGAAGATAATTTACGCACGAGGTAGTGTTTCGG
AACAACGCGCCCTATATTTCTCATTGAAAAAAAGGTACGTAGCCCAGGTT
GTTGTGCTTGCTAGAACTGGCAGCCGGCATGTTCTCCTGCTCTACCGGAA
TAGTTCAGAGCCAGCAGGGTTCATGGGAGAAGTCAGAGATGGCCAACGTG
GAACTTCCGAAAACATATGCTCATCATATTTGCAAAGTTTCGCGCCCTTC
CTTCCCTCTCCCCCTGAAATCTCTTGTTCGATGATGTTACATCGTAGTCC
TCGAATCGATTCACTCTCATCTTGCCGTGTCAAAAACGTTGATGATCGTC
GAGACTTGTTTCTGTAGGAAACAAGGGGGCGAATAAACCATATGAAAGCT
GAAATATGTAACCCCTCCCTTAAAGTTGCGTTACATCATCTAAATATTTT
CGTGGATGACCCTACTAAATACTCGGGGAGTGTTTCTTATTCCCATACAG
AGGTGCAGGTTACAGCAGTACGCACTTTTTTCCACCG

Coding sequence (CDS) from alignment at H-elongata_contig57957:378..2564+

>mRNA_H-elongata_contig57957.13268.1 ID=mRNA_H-elongata_contig57957.13268.1|Name=mRNA_H-elongata_contig57957.13268.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig57957:378..2564+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGACATGGAGGAGGCCGCCAAGAACATAGATGAGGGACATGGAGG
AGGCCGCCAAGAACATAGGCCCTTACAGGATTAGGCTCGTGACTGGAGAC
GTTGAGGACAAACCGGTGGTGTCGGGAAGAAGGATAATGGGTAGATTACC
GGGGATCAAGTCGATGTTCTCGATGACGAGAAAGCGATCAACATCTTCCC
TTGTCGCAAAGCAGAGCTTGCGAAGCCAGTCTGATTTGCGGCCGCAAGAA
CCGTTAGCGGCTGATCTACCCATCCCGCCCCATCAATCAGCAGGGGAAGA
AGAGGCGTTTGTGGCGTCGATGGGGGGACCTAAAAATGTGGTTCAGGCGG
TGGATCCCGAGATAAAGGTGGTACCGTTTGAGGTTCAGGAGCCATCCCTC
GGCGCTGCGGTTGTCGGCCATGTGACCATCCTGGAAGGTTCTTGCTACGT
GTGGGCGTCGACCGAAGGATCGGGGGCGCAGGGATCGTTAGCCGCGGCGG
TGGGCACGCGCTTTGGTGGGGGCATGCCGACGGCGACGCCATTGCTAGAC
GGTTCGGGAAGGGGCGAGGCTGGAGGCGGGGGGGTGAGCATCAGCATGGC
GCAGAGACTTTGCAAGCGCACCGGCCGGGTGGTGTTCGTGAGCTGCGATC
TCTCGGAGGATTCGCAGATTTTGGTTGCGGCGGTCGAGGCGAGGGTGATT
GCCTTGCTCAGGACGGAGGGTTGAGCCCTTACAGGATTAGGCTCGTGACT
GGAGACGTTGAGGACAAACCGGTGGTGTCGGGAAGAAGGATAATGGGTAG
ATTACCGGGGATCAAGTCGATGTTCTCGATGACGAGAAAGCGATCAACAT
CTTCCCTTGTCGCAAAGCAGAGCTTGCGAAGCCAGTCTGATTTGCGGCCG
CAAGAACCGTTAGCGGCTGATCTACCCATCCCGCCCCATCAATCAGCAGG
GGAAGAAGAGGCGTTTGTGGCGTCGATGGGGGGACCTAAAAATGTGGTTC
AGGCGGTGGATCCCGAGATAAAGGTGGTACCGTTTGAGGTTCAGGAGCCA
TCCCTCGGCGCTGCGGTTGTCGGCCATGTGACCATCCTGGAAGGTTCTTG
CTACGTGTGGGCGTCGACCGAAGGATCGGGGGCGCAGGGATCGTTAGCCG
CGGCGGTGGGCACGCGCTTTGGTGGGGGCATGCCGACGGCGACGCCATTG
CTAGACGGTTCGGGAAGGGGCGAGGCTGGAGGCGGGGGGGTGAGCATCAG
CATGGCGCAGAGACTTTGCAAGCGCACCGGCCGGGTGGTGTTCGTGAGCT
GCGATCTCTCGGAGGATTCGCAGATTTTGGTTGCGGCGGTCGAGGCGAGG
GTGATTGCCTTGCTCAGGACGGAGGGTTGA