mRNA_H-elongata_contig57888.13263.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57888.13263.1
Unique NamemRNA_H-elongata_contig57888.13263.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.220e-11
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:  541 SSIVLNASTVFINNTCGGSGGAIDLTEI--LLVVSRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNFAKAGGA 768
            SS+V+N +T F NNTCG +GG++ L +   L + + ++SF  NSA + GGA++ S  GIGPT  D +F  NFA+ GGA
Sbjct:  724 SSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGA 801
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BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.170e-10
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:  484 SFDGGAIGAATAVETVFGHSSIVLNASTVFINNTCGGSGGAIDLTEILLVV--SRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNFAKAGGAV 771
            S DGG IG+ +        S++V+N +T F+NNTCG +GGA+ L   L V   +  +SF+ N+A   GGA++ S  G GP      F  N A+ GGAV
Sbjct:  534 SLDGGVIGSFSTDSVSNQGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAV 631
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BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.310e-10
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:  487 FDGGAIGAATAVETV-FGHSSIVLNASTVFINNTCGGSGGAIDLT---EILLVVSRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNFAKAGGAV 771
            FDGGAI +    + +   +S+I++N +T F NN CGG+GGA+ L    ++++  +  + F  N+A   GGA++ S  G GP   +TTF+ N A+ GGAV
Sbjct:  887 FDGGAIVSPEFDDELNLENSAILINGTTSFFNNACGGNGGAVTLLGACDLVVNPAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAV 985
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BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: X6NBQ5_RETFI (Adhesin-like protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NBQ5_RETFI)

HSP 1 Score: 60.8 bits (146), Expect = 6.470e-7
Identity = 83/261 (31.80%), Postives = 118/261 (45.21%), Query Frame = 1 
Query:    1 GGAIIGTSGSEIFAESVIFSFNTAQSVGGAVYATSSNITLVSTTFIGNSAGYGGAM-FVLDSVVVVTGDAAFISNNAYGDGGALFIGENSFLGWNMQPVGXXXXXXXXXXXXXXXXXAEDCKLSWSGNMSLARNKAQXXXXXXXXXXXXXXXXXXXFDSNDASFDGGAIGAATAVETVFGHSSIVLNASTVFINNTCGGSGGAIDLTEILLVVSRELSFLNNSAVYFGGALY---ASQKGIGPTLIDTTFSDNFAKAGGAV 771
            G A+  T    IF E  +F+ NT   +GGAV+  S N+T    TF  NSA  GGA+ +   S  +   D  F  N A   GGA++I E ++   N       XXXXXXXXXXX          +      + +N AQ                      N AS  GG  GA   + +   H    L+  T F +N  G SGGA+ +T   + +    + + N+AV   GA++   A+  G+  TL +++  DN A +GGAV
Sbjct:    9 GSAMSSTMDDFIFVEDCVFTHNTGDKLGGAVFHNSGNLTFSRCTFTSNSADQGGAIGYYSPSSRLSLWDCVFEKNFASSQGGAVYIAEGNYDIINTTCRSNVXXXXXXXXXXXDGSFVCKSHQNHIFASHITQNSAQQGGGLYIHGCQFEMRNST-ISENTASQTGG--GAILDISSGSHH----LHKIT-FRDNVAGSSGGAVTITGGNITLDA-CTIMENTAVTLAGAIHITHAAMWGLNVTLTNSSIHDNIADSGGAV 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2X5_ECTSI5.220e-1147.44Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G301_ECTSI4.170e-1040.82Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI4.310e-1039.39Polymorphic Outer membrane protein G/I family n=3 ... [more]
X6NBQ5_RETFI6.470e-731.80Adhesin-like protein n=1 Tax=Reticulomyxa filosa T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57888contigH-elongata_contig57888:2108..3043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D7FRV1
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.808485-CDS-H-elongata_contig57888:2107..25851622930939.808485-CDS-H-elongata_contig57888:2107..2585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57888 2108..2585 -
1691679633.1139722-CDS-H-elongata_contig57888:2107..25851691679633.1139722-CDS-H-elongata_contig57888:2107..2585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57888 2108..2585 -
1622930939.8243966-CDS-H-elongata_contig57888:2750..30431622930939.8243966-CDS-H-elongata_contig57888:2750..3043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57888 2751..3043 -
1691679633.1369996-CDS-H-elongata_contig57888:2750..30431691679633.1369996-CDS-H-elongata_contig57888:2750..3043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57888 2751..3043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57888.13263.1prot_H-elongata_contig57888.13263.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57888 2108..3043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57888.13263.1

>prot_H-elongata_contig57888.13263.1 ID=prot_H-elongata_contig57888.13263.1|Name=mRNA_H-elongata_contig57888.13263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
GGAIIGTSGSEIFAESVIFSFNTAQSVGGAVYATSSNITLVSTTFIGNSA
GYGGAMFVLDSVVVVTGDAAFISNNAYGDGGALFIGENSFLGWNMQPVGN
TVFVNNNAKGFGGAIFAEDCKLSWSGNMSLARNKAQYGGALYLDNVNIQA
QGPTTFDSNDASFDGGAIGAATAVETVFGHSSIVLNASTVFINNTCGGSG
GAIDLTEILLVVSRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNF
AKAGGAV
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mRNA from alignment at H-elongata_contig57888:2108..3043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57888.13263.1 ID=mRNA_H-elongata_contig57888.13263.1|Name=mRNA_H-elongata_contig57888.13263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=936bp|location=Sequence derived from alignment at H-elongata_contig57888:2108..3043- (Himanthalia elongata Himel1 dioecious)
GGCGGGGCTATAATCGGGACTTCCGGGTCAGAGATTTTTGCGGAGAGTGT
AATATTCAGCTTCAATACCGCTCAAAGTGTGGGTGGTGCAGTTTACGCCA
CATCTTCAAACATTACCTTGGTGTCAACCACCTTCATCGGCAACAGCGCA
GGCTATGGCGGAGCAATGTTTGTGCTCGACTCAGTCGTGGTCGTGACCGG
AGATGCTGCCTTTATCAGCAATAATGCCTATGGAGACGGAGGGGCCCTTT
TCATTGGGGAAAATTCCTTCCTTGGCTGGAATATGCAGCCTGTGTTCCCT
GTGACTGCGCTGGAGAGCAGTCAAAGTTCTATTTTTAATTCGTCCAGTTA
TGGATCATCTTATGGGTTCAGTTACGCTTACAACTTCTCTGTGTCCAGTT
ACCTGAGCTTATCTTATCGTCTAGAAACCGAGGTCGATTGGATTGTCATC
GACTATAGTGGCAATACAGTATTCGTGAACAACAACGCGAAAGGGTTTGG
CGGTGCCATATTTGCCGAAGATTGTAAACTGTCCTGGTCGGGTAATATGT
CACTTGCACGAAACAAAGCTCAGTACGGGGGTGCTCTTTATCTCGATAAC
GTCAATATCCAAGCACAAGGCCCGACGACCTTTGATTCAAATGATGCGAG
TTTCGACGGGGGAGCTATCGGTGCGGCTACGGCGGTGGAAACTGTTTTCG
GGCATTCCTCAATCGTCCTGAACGCCTCGACGGTGTTCATTAACAACACA
TGCGGGGGAAGCGGTGGTGCCATCGATCTCACGGAAATACTCCTTGTTGT
CAGTAGAGAATTATCGTTCTTGAACAATTCCGCCGTATATTTTGGCGGTG
CCTTGTACGCCTCCCAAAAAGGGATAGGCCCTACCCTTATTGACACGACG
TTTTCAGATAACTTTGCCAAGGCCGGAGGCGCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig57888:2108..3043-

>mRNA_H-elongata_contig57888.13263.1 ID=mRNA_H-elongata_contig57888.13263.1|Name=mRNA_H-elongata_contig57888.13263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig57888:2108..3043- (Himanthalia elongata Himel1 dioecious)
GGCGGGGCTATAATCGGGACTTCCGGGTCAGAGATTTTTGCGGAGAGTGT
AATATTCAGCTTCAATACCGCTCAAAGTGTGGGTGGTGCAGTTTACGCCA
CATCTTCAAACATTACCTTGGTGTCAACCACCTTCATCGGCAACAGCGCA
GGCTATGGCGGAGCAATGTTTGTGCTCGACTCAGTCGTGGTCGTGACCGG
AGATGCTGCCTTTATCAGCAATAATGCCTATGGAGACGGAGGGGCCCTTT
TCATTGGGGAAAATTCCTTCCTTGGCTGGAATATGCAGCCTGTGGCGGGG
CTATAATCGGGACTTCCGGGTCAGAGATTTTTGCGGAGAGTGTAATATTC
AGCTTCAATACCGCTCAAAGTGTGGGTGGTGCAGTTTACGCCACATCTTC
AAACATTACCTTGGTGTCAACCACCTTCATCGGCAACAGCGCAGGCTATG
GCGGAGCAATGTTTGTGCTCGACTCAGTCGTGGTCGTGACCGGAGATGCT
GCCTTTATCAGCAATAATGCCTATGGAGACGGAGGGGCCCTTTTCATTGG
GGAAAATTCCTTCCTTGGCTGGAATATGCAGCCTGTTGGCAATACAGTAT
TCGTGAACAACAACGCGAAAGGGTTTGGCGGTGCCATATTTGCCGAAGAT
TGTAAACTGTCCTGGTCGGGTAATATGTCACTTGCACGAAACAAAGCTCA
GTACGGGGGTGCTCTTTATCTCGATAACGTCAATATCCAAGCACAAGGCC
CGACGACCTTTGATTCAAATGATGCGAGTTTCGACGGGGGAGCTATCGGT
GCGGCTACGGCGGTGGAAACTGTTTTCGGGCATTCCTCAATCGTCCTGAA
CGCCTCGACGGTGTTCATTAACAACACATGCGGGGGAAGCGGTGGTGCCA
TCGATCTCACGGAAATACTCCTTGTTGTCAGTAGAGAATTATCGTTCTTG
AACAATTCCGCCGTATATTTTGGCGGTGCCTTGTACGCCTCCCAAAAAGG
GATAGGCCCTACCCTTATTGACACGACGTTTTCAGATAACTTTGCCAAGG
CCGGAGGCGCGGTGTGGCAATACAGTATTCGTGAACAACAACGCGAAAGG
GTTTGGCGGTGCCATATTTGCCGAAGATTGTAAACTGTCCTGGTCGGGTA
ATATGTCACTTGCACGAAACAAAGCTCAGTACGGGGGTGCTCTTTATCTC
GATAACGTCAATATCCAAGCACAAGGCCCGACGACCTTTGATTCAAATGA
TGCGAGTTTCGACGGGGGAGCTATCGGTGCGGCTACGGCGGTGGAAACTG
TTTTCGGGCATTCCTCAATCGTCCTGAACGCCTCGACGGTGTTCATTAAC
AACACATGCGGGGGAAGCGGTGGTGCCATCGATCTCACGGAAATACTCCT
TGTTGTCAGTAGAGAATTATCGTTCTTGAACAATTCCGCCGTATATTTTG
GCGGTGCCTTGTACGCCTCCCAAAAAGGGATAGGCCCTACCCTTATTGAC
ACGACGTTTTCAGATAACTTTGCCAAGGCCGGAGGCGCGGTG
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