mRNA_H-elongata_contig57886.13262.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: D7G9F7_ECTSI (DA1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F7_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 3.960e-9 Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQL++ LWLE L G+ + G R G PPS+E LR +F HQIKTD S V
Sbjct: 453 VEEGICQLVSLLWLEHLGGRGTGDEEVRQRRRRG---PRHGAPPSNEELRQYFVHQIKTDTSVV 513
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A6H5KFR7_9PHAE (DA1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR7_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.970e-9 Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE--PPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQL++ LWLE L G+ + E +R PG PPS+E LR FF HQIKTD S V
Sbjct: 521 VEEGICQLVSLLWLEHLGGRGTGD-----EEVRQRRRRGPGHGAPPSNEELRQFFVHQIKTDTSVV 581
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A835YGM2_9STRA (LIM zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGM2_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 2.070e-6 Identity = 28/68 (41.18%), Postives = 33/68 (48.53%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRP----GEPPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQLIAWLWL++ G + PSD LR FF HQI+ D SAV
Sbjct: 465 VEEGICQLIAWLWLQQCNGSTGSSXXXXXXXXXXXXXXXXXXXXSSEPSDRALREFFVHQIEADTSAV 532
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A392NTD7_9FABA (Protein DA1-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NTD7_9FABA) HSP 1 Score: 49.7 bits (117), Expect = 5.010e-6 Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLE-RLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQ++A +WLE L+ N+ + ++ PP ++ L FF HQI++D+S V
Sbjct: 18 VEEGICQVLAHMWLESELSSASGSNFVPGSSSSASYTSKKGKRPPFEKKLGEFFKHQIESDISPV 82
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A072VE38_MEDTR (Putative transcription factor interactor and regulator LIM family n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VE38_MEDTR) HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5 Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE-PPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQ++A +WLE + F S + + + G+ PP ++ L FF HQI++D+S V
Sbjct: 373 VEEGICQVLAHMWLESELSSAPGSNFASASSSSASYTSKTGKRPPFEKKLGEFFKHQIESDISPV 437
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A5A7QBS3_STRAF (LIM zinc-binding domain-containing protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QBS3_STRAF) HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5 Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQ+IA +WLE + + S + R+ G P D+ L FF HQI TD SAV
Sbjct: 388 VEEGICQVIASMWLESQILSMSDSNHPSTSS-----SRKSGRSPFDKKLSKFFKHQIATDTSAV 446
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A1S2Y476_CICAR (protein DA1 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Y476_CICAR) HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5 Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE-PPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQ++A +WLE + + F S + + + G+ PP + L FF HQI++D+S V
Sbjct: 390 VEEGICQVLAHMWLESELSSASGSNFVSASSSSASYTSKKGKRPPFERKLGEFFKHQIESDISPV 454
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A2K3MNE0_TRIPR (Protein DA1-like n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MNE0_TRIPR) HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5 Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE-PPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQ++A +WLE + + F S + + + G+ PP ++ L FF HQI++D+S V
Sbjct: 391 VEEGICQVLAHMWLESELSSSSGSNFVSGSSSSASYTSKKGKRPPFEKKLGEFFKHQIESDISPV 455
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: E1ZGR9_CHLVA (LIM zinc-binding domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGR9_CHLVA) HSP 1 Score: 49.3 bits (116), Expect = 3.400e-5 Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
VEEG+CQL+A+LWLE G++A+ F +EY +E L FFAHQI++D SA+
Sbjct: 272 VEEGLCQLMAYLWLE---GQQAQTGFQ--DEY-------------EERLAAFFAHQIRSDTSAI 317
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: K7MNT8_SOYBN (LIM zinc-binding domain-containing protein n=19 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=K7MNT8_SOYBN) HSP 1 Score: 48.5 bits (114), Expect = 6.470e-5 Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1
Query: 1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRG-FFAHQIKTDVSAV 192
VEEG+CQ++A +WLE + + F S + R G+ P E G FF HQI++D+S V
Sbjct: 382 VEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPV 446 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57886.13262.1 >prot_H-elongata_contig57886.13262.1 ID=prot_H-elongata_contig57886.13262.1|Name=mRNA_H-elongata_contig57886.13262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRback to top mRNA from alignment at H-elongata_contig57886:2579..2770+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57886.13262.1 ID=mRNA_H-elongata_contig57886.13262.1|Name=mRNA_H-elongata_contig57886.13262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig57886:2579..2770+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57886:2579..2770+ >mRNA_H-elongata_contig57886.13262.1 ID=mRNA_H-elongata_contig57886.13262.1|Name=mRNA_H-elongata_contig57886.13262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig57886:2579..2770+ (Himanthalia elongata Himel1 dioecious)back to top |