mRNA_H-elongata_contig57886.13262.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57886.13262.1
Unique NamemRNA_H-elongata_contig57886.13262.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: D7G9F7_ECTSI (DA1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F7_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.960e-9
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQL++ LWLE L G+   +         G    R G PPS+E LR +F HQIKTD S V
Sbjct:  453 VEEGICQLVSLLWLEHLGGRGTGDEEVRQRRRRG---PRHGAPPSNEELRQYFVHQIKTDTSVV 513          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A6H5KFR7_9PHAE (DA1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.970e-9
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE--PPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQL++ LWLE L G+   +      E     +R PG   PPS+E LR FF HQIKTD S V
Sbjct:  521 VEEGICQLVSLLWLEHLGGRGTGD-----EEVRQRRRRGPGHGAPPSNEELRQFFVHQIKTDTSVV 581          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A835YGM2_9STRA (LIM zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGM2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.070e-6
Identity = 28/68 (41.18%), Postives = 33/68 (48.53%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRP----GEPPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQLIAWLWL++  G    +                       PSD  LR FF HQI+ D SAV
Sbjct:  465 VEEGICQLIAWLWLQQCNGSTGSSXXXXXXXXXXXXXXXXXXXXSSEPSDRALREFFVHQIEADTSAV 532          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A392NTD7_9FABA (Protein DA1-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NTD7_9FABA)

HSP 1 Score: 49.7 bits (117), Expect = 5.010e-6
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLE-RLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQ++A +WLE  L+     N+    +       ++   PP ++ L  FF HQI++D+S V
Sbjct:   18 VEEGICQVLAHMWLESELSSASGSNFVPGSSSSASYTSKKGKRPPFEKKLGEFFKHQIESDISPV 82          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A072VE38_MEDTR (Putative transcription factor interactor and regulator LIM family n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VE38_MEDTR)

HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE-PPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQ++A +WLE        + F S +     +  + G+ PP ++ L  FF HQI++D+S V
Sbjct:  373 VEEGICQVLAHMWLESELSSAPGSNFASASSSSASYTSKTGKRPPFEKKLGEFFKHQIESDISPV 437          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A5A7QBS3_STRAF (LIM zinc-binding domain-containing protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QBS3_STRAF)

HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5
Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQ+IA +WLE      + +   S +       R+ G  P D+ L  FF HQI TD SAV
Sbjct:  388 VEEGICQVIASMWLESQILSMSDSNHPSTSS-----SRKSGRSPFDKKLSKFFKHQIATDTSAV 446          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A1S2Y476_CICAR (protein DA1 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Y476_CICAR)

HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE-PPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQ++A +WLE      + + F S +     +  + G+ PP +  L  FF HQI++D+S V
Sbjct:  390 VEEGICQVLAHMWLESELSSASGSNFVSASSSSASYTSKKGKRPPFERKLGEFFKHQIESDISPV 454          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: A0A2K3MNE0_TRIPR (Protein DA1-like n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MNE0_TRIPR)

HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGE-PPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQ++A +WLE      + + F S +     +  + G+ PP ++ L  FF HQI++D+S V
Sbjct:  391 VEEGICQVLAHMWLESELSSSSGSNFVSGSSSSASYTSKKGKRPPFEKKLGEFFKHQIESDISPV 455          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: E1ZGR9_CHLVA (LIM zinc-binding domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGR9_CHLVA)

HSP 1 Score: 49.3 bits (116), Expect = 3.400e-5
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRGFFAHQIKTDVSAV 192
            VEEG+CQL+A+LWLE   G++A+  F   +EY             +E L  FFAHQI++D SA+
Sbjct:  272 VEEGLCQLMAYLWLE---GQQAQTGFQ--DEY-------------EERLAAFFAHQIRSDTSAI 317          
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Match: K7MNT8_SOYBN (LIM zinc-binding domain-containing protein n=19 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=K7MNT8_SOYBN)

HSP 1 Score: 48.5 bits (114), Expect = 6.470e-5
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1
Query:    1 VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLRG-FFAHQIKTDVSAV 192
            VEEG+CQ++A +WLE      + + F S +        R G+ P  E   G FF HQI++D+S V
Sbjct:  382 VEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPV 446          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57886.13262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G9F7_ECTSI3.960e-948.44DA1-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KFR7_9PHAE3.970e-950.00DA1-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YGM2_9STRA2.070e-641.18LIM zinc-binding domain-containing protein n=1 Tax... [more]
A0A392NTD7_9FABA5.010e-635.38Protein DA1-like n=1 Tax=Trifolium medium TaxID=97... [more]
A0A072VE38_MEDTR1.350e-536.92Putative transcription factor interactor and regul... [more]
A0A5A7QBS3_STRAF1.350e-542.19LIM zinc-binding domain-containing protein n=1 Tax... [more]
A0A1S2Y476_CICAR1.350e-536.92protein DA1 n=1 Tax=Cicer arietinum TaxID=3827 Rep... [more]
A0A2K3MNE0_TRIPR1.350e-536.92Protein DA1-like n=2 Tax=Trifolium pratense TaxID=... [more]
E1ZGR9_CHLVA3.400e-543.75LIM zinc-binding domain-containing protein n=1 Tax... [more]
K7MNT8_SOYBN6.470e-538.46LIM zinc-binding domain-containing protein n=19 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57886contigH-elongata_contig57886:2579..2770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.7596009-CDS-H-elongata_contig57886:2578..27701622930939.7596009-CDS-H-elongata_contig57886:2578..2770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57886 2579..2770 +
1691679633.103881-CDS-H-elongata_contig57886:2578..27701691679633.103881-CDS-H-elongata_contig57886:2578..2770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57886 2579..2770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57886.13262.1prot_H-elongata_contig57886.13262.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57886 2579..2770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57886.13262.1

>prot_H-elongata_contig57886.13262.1 ID=prot_H-elongata_contig57886.13262.1|Name=mRNA_H-elongata_contig57886.13262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
VEEGVCQLIAWLWLERLAGKRARNYFDSPNEYGGGWQRRPGEPPSDEHLR
GFFAHQIKTDVSAV
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mRNA from alignment at H-elongata_contig57886:2579..2770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57886.13262.1 ID=mRNA_H-elongata_contig57886.13262.1|Name=mRNA_H-elongata_contig57886.13262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig57886:2579..2770+ (Himanthalia elongata Himel1 dioecious)
GTCGAAGAGGGCGTTTGTCAACTGATCGCCTGGCTGTGGCTGGAGCGTCT TGCTGGCAAGCGCGCTCGGAATTACTTCGACAGCCCGAATGAGTACGGGG GGGGCTGGCAACGACGTCCCGGCGAACCTCCATCTGACGAACATCTTCGG GGTTTCTTTGCTCATCAGATCAAAACGGACGTGTCTGCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig57886:2579..2770+

>mRNA_H-elongata_contig57886.13262.1 ID=mRNA_H-elongata_contig57886.13262.1|Name=mRNA_H-elongata_contig57886.13262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig57886:2579..2770+ (Himanthalia elongata Himel1 dioecious)
GTCGAAGAGGGCGTTTGTCAACTGATCGCCTGGCTGTGGCTGGAGCGTCT
TGCTGGCAAGCGCGCTCGGAATTACTTCGACAGCCCGAATGAGTACGGGG
GGGGCTGGCAACGACGTCCCGGCGAACCTCCATCTGACGAACATCTTCGG
GGTTTCTTTGCTCATCAGATCAAAACGGACGTGTCTGCGGTGGTCGAAGA
GGGCGTTTGTCAACTGATCGCCTGGCTGTGGCTGGAGCGTCTTGCTGGCA
AGCGCGCTCGGAATTACTTCGACAGCCCGAATGAGTACGGGGGGGGCTGG
CAACGACGTCCCGGCGAACCTCCATCTGACGAACATCTTCGGGGTTTCTT
TGCTCATCAGATCAAAACGGACGTGTCTGCGGTG
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