mRNA_H-elongata_contig57866.13261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57866.13261.1
Unique NamemRNA_H-elongata_contig57866.13261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: D8LS61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS61_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 1.670e-79
Identity = 149/285 (52.28%), Postives = 175/285 (61.40%), Query Frame = 3
Query:    3 VVRHQLGPQSEVYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRKAPTTP 857
            VVRH LGP S++Y  LGPE GE+VRNM+AGAASS V Q FTVP+D+I Q                                                                                   VY ESGLRGFYRG G+S+LQFAPTSAIWWAAYG+YS+AF++AL N  P  +P LTA++R++G QAAAG CTGMTTV+LTNPLDVLRTRLQV+GR GD+RT+ SEYR L+AESGP GL++GL PR+LAMAPASVLIV+VYELIKRLSRK P  P
Sbjct:   96 VVRHHLGPGSDLYQRLGPEKGELVRNMSAGAASSAVMQCFTVPLDIIGQ-----------------------------------------------------------------------------------VYGESGLRGFYRGFGISVLQFAPTSAIWWAAYGVYSRAFVRALGNL-PEPVPELTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLRTRLQVEGRRGDDRTIASEYRILMAESGPRGLMKGLGPRILAMAPASVLIVSVYELIKRLSRKTPLPP 296          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A6H5JPC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC8_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 3.390e-71
Identity = 119/162 (73.46%), Postives = 143/162 (88.27%), Query Frame = 3
Query:  372 ISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRKAPTTP 857
            ++A+ VARQVY ESGLRGFYRG G+S+LQFAPTSAIWWAAYG+YS+AF++AL N  P  +P LTA++R++G QAAAG CTGMTTV+LTNPLDVLRTRLQV+GR GD+RT+ SEYR L+AESGP GL++GL PR+LA+APASVLIV+VYELIKRLSRK P  P
Sbjct:  107 VTAREVARQVYGESGLRGFYRGFGISVLQFAPTSAIWWAAYGVYSRAFVRALGNL-PEPVPKLTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLRTRLQVEGRRGDDRTIVSEYRILMAESGPRGLMKGLGPRILAVAPASVLIVSVYELIKRLSRKTPLAP 267          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A835YRA5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA5_9STRA)

HSP 1 Score: 181 bits (460), Expect = 7.270e-48
Identity = 121/298 (40.60%), Postives = 156/298 (52.35%), Query Frame = 3
Query:    3 VVRHQLGPQSE--VYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYS---------------KAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQ-GRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
            ++R  LGP+S   +Y+ +G + GEVVRNM AGA +S   Q  TVPIDV+SQ++MV G  GG+  PT AAA                                                            +AR+VY   G+RGFYRG   +++QFAPTSA WW+AYGLY                K  + A  +  P  L   + E R+I  QA AG   G TTV+LTNPLDV+RTRLQV+ G      T+ SE RAL A +G   L++GL PRM+++APASVL+VT YE IKR+SRK
Sbjct:  108 LLRRYLGPESSPSLYMSMGAQQGEVVRNMVAGAGASVAMQVATVPIDVVSQRLMVAGIAGGEGGPTTAAA------------------------------------------------------------IAREVYATGGVRGFYRGFAAAVMQFAPTSAAWWSAYGLYKXXXXXXXXXXXXXXXKEPLAARIDALPLNL---SEEARQILVQATAGYLAGATTVVLTNPLDVIRTRLQVRRGAAAAGATMLSEARALWAAAGARALMKGLGPRMISVAPASVLVVTTYEYIKRVSRK 342          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A7S2V638_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V638_9STRA)

HSP 1 Score: 164 bits (415), Expect = 8.410e-42
Identity = 103/282 (36.52%), Postives = 142/282 (50.35%), Query Frame = 3
Query:    3 VVRHQLGPQSEVYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGD--NRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
            V+R +LGP S +Y  LGP  GE+ RN+ +GA  S   Q FT+P+DV+SQ+MMV G     + P A+                                                              +ARQ+Y + G+RGFY+G+G S++QFAPTSAIWW  Y        +     + ++  A         +QA AG   G   V+LTNPLDV+RTRLQV G      NRT  +E++ L+A  G   L +GLVPR++A+APASV+I++VYE IKR+S K
Sbjct:  126 VLRAKLGPGSALYQVLGPTGGELARNLISGAGCSAAFQVFTIPVDVVSQRMMVAGKGDANMRPKASV-------------------------------------------------------------LARQIYEKHGIRGFYKGVGASLMQFAPTSAIWWTTYHAVELHVERVSRPLFSNKDNAARV------SQAIAGFTGGTVAVLLTNPLDVIRTRLQVLGTENSTANRTFVTEFQHLLATEGAKSLTKGLVPRLIAVAPASVIIISVYEFIKRVSVK 340          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A7S4NRY9_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NRY9_GUITH)

HSP 1 Score: 144 bits (364), Expect = 6.610e-35
Identity = 93/279 (33.33%), Postives = 139/279 (49.82%), Query Frame = 3
Query:    6 VRHQLGPQSEVYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
            VRH L   +E   ++ P+   VVRN  AG  +S V+Q   VPID++SQK M+N   G                          D  G+L                                     +V++++ R+ G++GFY+G G S+  +AP+SAIWW +YG Y +  +Q+  +F P      T+   K   +A+AG   G+   + TNP+DV RTRLQV+G   D   LR+  R L  + GP  LL+G+  R++A  P+S++IVTVYEL+KRLS++
Sbjct:  106 VRHHLMHMNERNRFISPKRMNVVRNAVAGGCASLVSQTIVVPIDIVSQKQMMNFGTG--------------------------DSNGSLV------------------------------------HVSKEILRQDGVKGFYKGFGASLCVYAPSSAIWWGSYG-YLRERLQS--HFMP------TSHASKRLTEASAGASAGLVAAVATNPIDVARTRLQVEGHPRDGSNLRTTLRHLWCQEGPKSLLKGVQARIMASVPSSIMIVTVYELVKRLSKR 313          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A5J4Y3N1_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3N1_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 4.090e-31
Identity = 96/263 (36.50%), Postives = 134/263 (50.95%), Query Frame = 3
Query:   78 NMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTA---AAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRK---IGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNR--TLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
            N  AGA +S VTQ   VP+DV+SQ++MVN  R  Q  PT    A++   +    + A  T    +     T A A GG  G +                       +AR + ++ G+RG YRG G S+  F P+SAIWW+AYG Y KA     E     +       R     +  Q ++ + +G+T+ +LTNPLDV++TRLQV  R  D +  T R   + LIAE GP GLLRG+ PR+ + A  S  +VT YE +KR+  K
Sbjct:  122 NFIAGAVASLVTQSIIVPVDVVSQRLMVND-RPSQPAPTPNTHASSSNTSSNGSQKAGLTTHHTR--AASTAASAPGGQNGFA-----------------------LARLIVQQDGVRGLYRGFGASVATFVPSSAIWWSAYGAYQKAIWHQYEGLTGRRAEGRMQARSPSEVVAVQTSSAVLSGVTSAVLTNPLDVVKTRLQVAMRQQDGQQPTFRGIAQKLIAEEGPKGLLRGVAPRITSTALWSTCMVTTYEFLKRICLK 358          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: UPI0018F4016C (solute carrier family 25 member 44 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F4016C)

HSP 1 Score: 125 bits (313), Expect = 4.670e-28
Identity = 86/255 (33.73%), Postives = 123/255 (48.24%), Query Frame = 3
Query:   72 VRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLS 836
            +R++ AG ++S V Q  TVPIDV+SQ +MV               RG  +  G   +A  +  +GTL RT                                 ++V RQ++R  GLRGFYRG   S+L + P SA WW  Y  Y+    + L    P   P L         QA +G     T   LTNP+DV+R R+QV+GR    +T    +R L+AE GP GL +GL  R++A  P+++++V  YE +K+LS
Sbjct:  110 LRSLLAGGSASLVAQSITVPIDVVSQHLMVQR-------------RGPGQELGRFQLARGAGGRGTLGRT---------------------------------RDVVRQIFRADGLRGFYRGYVASLLTYIPNSAAWWPFYHFYA----EQLSRLCPKDCPHLL-------LQAISGPLAAATASTLTNPMDVIRARVQVEGRDSIVQT----FRQLMAEEGPWGLTKGLSARIIAATPSTIVVVVGYETLKKLS 303          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A369RWF2_9METZ (Solute carrier family 25 member 44 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369RWF2_9METZ)

HSP 1 Score: 126 bits (316), Expect = 5.400e-28
Identity = 88/277 (31.77%), Postives = 142/277 (51.26%), Query Frame = 3
Query:   66 EVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGE-----------ARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEE-------RGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
            E  R   AG A+S + Q F VPID++SQK+MV G +  +   + + +  +           ++    +A    +D+   +R   A A      +S +  +     +         +  +  SA+ +A ++++  G+RGFYRG  +SIL F P+SAIWW +Y  Y+      L  F P   P L        AQA AG   G+T+ +L NP+DV+RTR+QV     D +++ +  + LI E G  G  +G+  R+++MAP+S++I+  YE IK LS K
Sbjct:  106 EATRGFVAGGAASVIAQSFGVPIDIVSQKLMVQGQQAPESYTSHSPSLKKEIANQDQYDRKSKATTTIASRHTTDRPFAIRNPAAAASXXXXSSSQKSTKTINSPQFRSLYTLSQQDAKLKSAKTIANEIWKAYGIRGFYRGYLISILTFGPSSAIWWGSYAAYN----DLLSKFIPPNTPHLV-------AQATAGATAGITSAVLINPVDVIRTRMQVL----DTKSIIATTKTLIQEEGLAGFTKGMSARVISMAPSSIIIIISYETIKNLSAK 367          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A1V9ZQ95_9STRA (Mitochondrial Carrier (MC) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ95_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.680e-27
Identity = 85/255 (33.33%), Postives = 126/255 (49.41%), Query Frame = 3
Query:   78 NMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
            N  +GA +S V Q   VP+D++SQ+MM++G  G  +                        Q  T  RT             +G+ +                 +A+ +YR  G+RGFY+G   SIL +AP+SA+WW +YG+    + + L NF    +       R++ AQA  G   G+ T I+TNP+DV+RTR Q+  + G   T    ++ LI   G  GL  G V R++AM P+ VL++T YEL+KRLSRK
Sbjct:  120 NFISGATASVVNQTVIVPLDIVSQRMMIDGQGGPDM------------------------QSKTRHRT-------------QGLMS-----------------IAKDIYRTQGVRGFYKGYVPSILTYAPSSALWWGSYGVVWPHYYRLL-NFDIDPM------WRQMIAQAFGGGTAGVVTAIITNPMDVIRTRTQIHTQFGAVDT----FKYLIKREGIPGLWTGAVARVMAMGPSGVLVITAYELVKRLSRK 309          
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: UPI001CF3F204 (LOW QUALITY PROTEIN: solute carrier family 25 member 44-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3F204)

HSP 1 Score: 122 bits (307), Expect = 2.590e-27
Identity = 90/257 (35.02%), Postives = 119/257 (46.30%), Query Frame = 3
Query:   72 VRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
            VR   AG  +S V+Q  TVP+DVISQK+MV G                               QG     + G                             A  + R++ R  G RG YRG  +S++ +APTSAIWW  YG Y++ F+ +L       L  L          A AG   G TT  +TNPLD++RTRLQV G  G +  +   +R L+ E GP GL +GL  RML+M P+SV++V  YE +KRLS K
Sbjct:  106 VRGFLAGGIASIVSQTITVPVDVISQKLMVQG-------------------------------QGVNSGKLKG-----------------------------ASTIVREIVRCDGPRGLYRGYLISLMTYAPTSAIWWFTYGAYTR-FVGSLVVSGTPHLFVL----------AVAGALAGFTTSTITNPLDIMRTRLQVGG--GKSTVVIHMFRTLLQEEGPTGLTKGLSARMLSMVPSSVIMVLGYETVKRLSLK 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS61_ECTSI1.670e-7952.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPC8_9PHAE3.390e-7173.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRA5_9STRA7.270e-4840.60Mitochondrial carrier domain-containing protein n=... [more]
A0A7S2V638_9STRA8.410e-4236.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4NRY9_GUITH6.610e-3533.33Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A5J4Y3N1_9CHLO4.090e-3136.50Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
UPI0018F4016C4.670e-2833.73solute carrier family 25 member 44 n=1 Tax=Tachygl... [more]
A0A369RWF2_9METZ5.400e-2831.77Solute carrier family 25 member 44 n=2 Tax=Trichop... [more]
A0A1V9ZQ95_9STRA1.680e-2733.33Mitochondrial Carrier (MC) Family n=1 Tax=Thrausto... [more]
UPI001CF3F2042.590e-2735.02LOW QUALITY PROTEIN: solute carrier family 25 memb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57866contigH-elongata_contig57866:63..3572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.1
Seed ortholog evalue1.9e-59
Seed eggNOG ortholog2880.D8LS61
Preferred nameSLC25A44
KEGG koko:K15121
KEGG TC2.A.29
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0019867,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098588,GO:0098805
EggNOG free text desc.transmembrane transport
EggNOG OGsKOG0765@1,KOG0765@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-12_004710.1
Exons4
Model size1889
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57866.13261.1prot_H-elongata_contig57866.13261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57866 143..2576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.622179-UTR-H-elongata_contig57866:62..1421622930939.622179-UTR-H-elongata_contig57866:62..142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57866 63..142 +
1691679633.036082-UTR-H-elongata_contig57866:62..1421691679633.036082-UTR-H-elongata_contig57866:62..142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57866 63..142 +
1622930939.71117-UTR-H-elongata_contig57866:2576..35721622930939.71117-UTR-H-elongata_contig57866:2576..3572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57866 2577..3572 +
1691679633.0933478-UTR-H-elongata_contig57866:2576..35721691679633.0933478-UTR-H-elongata_contig57866:2576..3572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57866 2577..3572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.6426234-CDS-H-elongata_contig57866:142..2111622930939.6426234-CDS-H-elongata_contig57866:142..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 143..211 +
1691679633.0492525-CDS-H-elongata_contig57866:142..2111691679633.0492525-CDS-H-elongata_contig57866:142..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 143..211 +
1622930939.6543336-CDS-H-elongata_contig57866:748..10751622930939.6543336-CDS-H-elongata_contig57866:748..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 749..1075 +
1691679633.0610535-CDS-H-elongata_contig57866:748..10751691679633.0610535-CDS-H-elongata_contig57866:748..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 749..1075 +
1622930939.6756618-CDS-H-elongata_contig57866:1763..19901622930939.6756618-CDS-H-elongata_contig57866:1763..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 1764..1990 +
1691679633.074565-CDS-H-elongata_contig57866:1763..19901691679633.074565-CDS-H-elongata_contig57866:1763..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 1764..1990 +
1622930939.6923237-CDS-H-elongata_contig57866:2386..25761622930939.6923237-CDS-H-elongata_contig57866:2386..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 2387..2576 +
1691679633.0841086-CDS-H-elongata_contig57866:2386..25761691679633.0841086-CDS-H-elongata_contig57866:2386..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57866 2387..2576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57866.13261.1

>prot_H-elongata_contig57866.13261.1 ID=prot_H-elongata_contig57866.13261.1|Name=mRNA_H-elongata_contig57866.13261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAG
EMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISA
QNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALE
NFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGR
HGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKR
LSRKAPTTPRATTSSEEIYS*
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mRNA from alignment at H-elongata_contig57866:63..3572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57866.13261.1 ID=mRNA_H-elongata_contig57866.13261.1|Name=mRNA_H-elongata_contig57866.13261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3510bp|location=Sequence derived from alignment at H-elongata_contig57866:63..3572+ (Himanthalia elongata Himel1 dioecious)
AGGTAGTTCGACATCAACTCGGGCCTCAAAGCGAGGTGTACCTCTATTTG GGGCCGGAGACGGGAGAAGTTGTTCGTAACATGACCGCCGGGGCCGCCAG TTCCACCGTGACACAATTTTTCACGGTTCCCATTGACGTCATCAGCCAGG TGAGAGGCCCTATTTTTGCTATGAATTTTATTGTTTTTTTGTTTGTGTTT ATTTTATCTCTCTTTTTTTTCTTCTTCAATTTGGAGAGCGAGCCTCGTGT TGCGTTGCAGCTACTGCCTCTCAAGTTGAGATGTATGATAAAAAAAATCC TCTGACGTGCACGTATGGCTCGGTTGGTGCAGGCTCTTTGCTTCTACCCG ACCGGTTGCTTGCCTTGAGTGTTGGAGGTCGGTGATGCCCTTGGTTGCCC GTAGTGATCCCCAATGAGATGATCTTGTGGAATCCGCGAAAGTCTCGTCC GAGCGGATGGCGACCTCTCTAGATAGATGTACGTAGAACAAGACGAACGC AAAAATGGTCGAGTCGTGATTCTTACGCCTCTGAGTAGAGGGGTGGACTT GATCAGCCATCGGGGATTGTATCTATCATCAGGGGAGGGGAACGCTCCTG CCACGACGCACACGCCGACGTAAAGCAATAATTGATCTCCTTCTCTCTCT CTCTTTTTATATTATATTATGTATCCATCAATGCAGAAAATGATGGTCAA CGGTCCACGGGGTGGACAAGTGGTACCAACGGCTGCGGCGGCGAGGGGGG AAGCTAGACCGGCGGGTGAAATGGCCGTGGCTACCGCATCAGATCAGCAA GGGACACTGCGAAGAACCGTTGCGGGCGCTGGAGGTGGCAGCGGTGGAAC GAGTTGTGAGGGGATACAGGCGCGGCAAGGAGAGGAGAGGGGTGAGGGAA GGCGTCACATCAGTGCGCAGAACGTGGCGAGGCAGGTGTACCGCGAGAGC GGTTTGAGGGGGTTCTACCGTGGGATCGGCGTTTCGATTCTGCAGTTCGC GCCGACGTCGGCGGTGAGTCAGTTTTGCTGCTGCTGCGGCGGCGGCGCGG GTGGGGTCTTCCCTGGAGGTCTATATATATAAACACGAAGAACGGGGGAA CTTTTCGTTTTCGGCGCTCCCCGCCAGTAAAACGCCTTGTCAGCTTTAAA GTAAAGTTTGATTCTGAAGTCCCGATTCCCTATCTCTCCGATGCCACGCA CTGACCGCGCGAGGTGTGTTTTTTTTGCGCGCATGTCATTTCCACAGGTA GTAAAAAATAATAATCCCTAGGTTGGGGAAGTGAAAGATTGGACGAAGCT GTCCCTAAGTCTATCGGGGGCGATACCAAAACATGCCCTACCGGGGACAT ATTTGATGAATCCCCTGGTGGTAATATTTTTTATTCGAAGCCCCCCACCC CTCCGTCCTCCCGAGGACGCGTGGCCAATGGTCTATCATCTCAGGCATGC AAAACTTTAGTATGTCCCCTTCTGTATAACGCCGCCTCGCTGTCGAAAAC CCAGCCAATCGCTCCGTCCCGGCATTGCTGGGATGCGTAGCCTGTGTACG TTAGAATACGGCATGCATTTAACATAATAAGTACACACCCCATTTCCCCC GTTTCACCCCCTGAACTTGGGGGCAGATTCAGCCTGATACCACAACGTCA ACCGTCGAATCACTTATCCCTATTAAACCTTCGCCGATTAAACGACAATA GATTTGGTGGGCGGCGTACGGTCTGTACAGCAAGGCGTTCATACAAGCCC TGGAAAACTTCTACCCTTCACAACTCCCAGCCTTGACGGCAGAGCGGCGC AAGATCGGAGCGCAGGCGGCCGCGGGGCTGTGCACGGGAATGACCACGGT GATTCTCACCAATCCGCTCGATGTACTGCGAACGAGACTGCAGGTGCAAG GGCGTCACGGCGACAATAGGACGCTGCGGTGAGTGGTAAAAAAAATCCTA CCCCCACAGCCGCAACAACCGTCACTCGCGCGATCGGTTTTTATCTGCTT TTGGTGCACCGCGCACCATTTGTTATGTTGCTTTCAAGAGGAGTTTCTTT GCTTTATTCCTTTTTCAGTTTTATATATCACTGTTCACGGCAAAACTCCC TTGTGCGTGCCAAGTCGAGTGCGCTGTATATGTATTTGTATTGAAATGCG CATAGCAGCGCGATCCGACCTTGTCATGCTAGTCATTCTAGACTTCTCTC GCATTGATCCTGTGTGTGTTCCTTCAGCCACGACTTCGCCTCAATTTTTC TTCCCCTCTTGACAACGTCAAACGTTGTTCCCCCCTTTCGGGGTTTCTGG TACGTGGACGGCGTCGCGGCGCAGGTCGGAGTACCGGGCATTGATTGCCG AAAGCGGACCGGGGGGTCTCTTGAGGGGCCTGGTGCCCCGGATGCTGGCC ATGGCTCCAGCGTCTGTCTTGATCGTGACCGTGTACGAACTGATCAAGCG CTTGAGCCGGAAGGCTCCAACGACCCCCCGTGCCACGACGTCTTCAGAAG AAATTTACAGCTGACGCCGAATCCCGCTTCTCGATTTTTGTTCATTTCTG TTTCTCATGACCGCTTTATTAGTCCTCCTTCTAGTGACAACACCTGCCGT AGTTTGCAGGTTAAACACTGCTGTAATGTAAGAAAACAGTTTTGTAGGCG CCGAAAACCAGGGCTTGGCTTCCCTAAAATGGCGCGGTTGCCTGTCGTTT CGGGTATTAACGCAAGTTTTCTTGACTCATTTTTGGCACTGTGTGTGCGC GCCGTTTCGAAATGGATTCGGTTACAAGCATTTTTGAGTGGCGCGCTTGA CATATACAGCTTGTGCGCTAGCTTGGACTGAACCAGAGCAGGGCTAAAGG GAGCATTAGTAGTTCGGACGAGTTACGTCGGCACCCTTTTGTGTACAAGG GCGCCGACTGCATCTGAAGATTTGCGAGAGGGGCCTGTGGAAATCGACTC TTACGGACCCCCTCCTAAGATTTAATTATGCTGACATTTTCTAGCAAGAG AATCATTAAACAAATTAAGTAGTGGCCTTTGTCCGTTCTCACCGCAGCAA GCAGTTGAGCGGTTTGTTAATAACTATTAATGGACTCTCTCCCTTTTTCG AGATTGTTGACGAATGTAAGCCGCGCAAGGCTCTCTCTGTCAGATTGCCC GGCCTCAAAAAACATGCCGCTCGTTTAAGGCTCTTTCGCCGTTTTGTGTA ACAACGAGTGTACTACACACAAGATAAACTATTATATGTACTAATAAAAT AGGCGTGTAACGCTTTTGAGCGCCTAGGTGGTTTCGTAACTTCGGAAACA AGAGACACGGACGTCTCTCTTCCTCATTGCTCGGATGACATTTTTTCTCG AGCAGGAGATCGCCACATCCCCGTGCGGTGATTGGGTCACTGTTTGATGA GAGGGGGTGCGCACTCAATTTTTGTATACCATAGTGTCATTAGACCATTG ACCACGCGCGCCCTCGGGAGGACAACGGGTGGAGGGGGTGTAAATAACTA TTGACACGCT
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Coding sequence (CDS) from alignment at H-elongata_contig57866:63..3572+

>mRNA_H-elongata_contig57866.13261.1 ID=mRNA_H-elongata_contig57866.13261.1|Name=mRNA_H-elongata_contig57866.13261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig57866:63..3572+ (Himanthalia elongata Himel1 dioecious)
ATGACCGCCGGGGCCGCCAGTTCCACCGTGACACAATTTTTCACGGTTCC
CATTGACGTCATCAGCCAGATGACCGCCGGGGCCGCCAGTTCCACCGTGA
CACAATTTTTCACGGTTCCCATTGACGTCATCAGCCAGAAAATGATGGTC
AACGGTCCACGGGGTGGACAAGTGGTACCAACGGCTGCGGCGGCGAGGGG
GGAAGCTAGACCGGCGGGTGAAATGGCCGTGGCTACCGCATCAGATCAGC
AAGGGACACTGCGAAGAACCGTTGCGGGCGCTGGAGGTGGCAGCGGTGGA
ACGAGTTGTGAGGGGATACAGGCGCGGCAAGGAGAGGAGAGGGGTGAGGG
AAGGCGTCACATCAGTGCGCAGAACGTGGCGAGGCAGGTGTACCGCGAGA
GCGGTTTGAGGGGGTTCTACCGTGGGATCGGCGTTTCGATTCTGCAGTTC
GCGCCGACGTCGGCGAAAATGATGGTCAACGGTCCACGGGGTGGACAAGT
GGTACCAACGGCTGCGGCGGCGAGGGGGGAAGCTAGACCGGCGGGTGAAA
TGGCCGTGGCTACCGCATCAGATCAGCAAGGGACACTGCGAAGAACCGTT
GCGGGCGCTGGAGGTGGCAGCGGTGGAACGAGTTGTGAGGGGATACAGGC
GCGGCAAGGAGAGGAGAGGGGTGAGGGAAGGCGTCACATCAGTGCGCAGA
ACGTGGCGAGGCAGGTGTACCGCGAGAGCGGTTTGAGGGGGTTCTACCGT
GGGATCGGCGTTTCGATTCTGCAGTTCGCGCCGACGTCGGCGATTTGGTG
GGCGGCGTACGGTCTGTACAGCAAGGCGTTCATACAAGCCCTGGAAAACT
TCTACCCTTCACAACTCCCAGCCTTGACGGCAGAGCGGCGCAAGATCGGA
GCGCAGGCGGCCGCGGGGCTGTGCACGGGAATGACCACGGTGATTCTCAC
CAATCCGCTCGATGTACTGCGAACGAGACTGCAGGTGCAAGGGCGTCACG
GCGACAATAGGACGCTGCGATTTGGTGGGCGGCGTACGGTCTGTACAGCA
AGGCGTTCATACAAGCCCTGGAAAACTTCTACCCTTCACAACTCCCAGCC
TTGACGGCAGAGCGGCGCAAGATCGGAGCGCAGGCGGCCGCGGGGCTGTG
CACGGGAATGACCACGGTGATTCTCACCAATCCGCTCGATGTACTGCGAA
CGAGACTGCAGGTGCAAGGGCGTCACGGCGACAATAGGACGCTGCGGTCG
GAGTACCGGGCATTGATTGCCGAAAGCGGACCGGGGGGTCTCTTGAGGGG
CCTGGTGCCCCGGATGCTGGCCATGGCTCCAGCGTCTGTCTTGATCGTGA
CCGTGTACGAACTGATCAAGCGCTTGAGCCGGAAGGCTCCAACGACCCCC
CGTGCCACGACGTCTTCAGAAGAAATTTACAGCTGAGTCGGAGTACCGGG
CATTGATTGCCGAAAGCGGACCGGGGGGTCTCTTGAGGGGCCTGGTGCCC
CGGATGCTGGCCATGGCTCCAGCGTCTGTCTTGATCGTGACCGTGTACGA
ACTGATCAAGCGCTTGAGCCGGAAGGCTCCAACGACCCCCCGTGCCACGA
CGTCTTCAGAAGAAATTTACAGCTGA
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