mRNA_H-elongata_contig57852.13260.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57852.13260.1
Unique NamemRNA_H-elongata_contig57852.13260.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57852.13260.1 vs. uniprot
Match: D8LNL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL1_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.420e-31
Identity = 66/107 (61.68%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:    1 WHLQAVVEPGDLLIAINGQSLGSNNFGFEDAIERCSRASMPRRGEAIWVLRFARMWGASAAEIECALGVEA-CGVFDAEGNPLH-LVTARLHPSAPPYFHLNSPTRQ 315
            ++L+A+VEPGDLL+AING+ L  + F FEDAI  CSRAS+PR      VLRFARM GASAAEIECA G +  C  FDA   P   LVTA+LHPSAP +F LN PTR+
Sbjct:  133 FYLKAIVEPGDLLVAINGKKLTGSRFSFEDAIAVCSRASLPR------VLRFARMKGASAAEIECAFGADVVCATFDAMDAPQQRLVTAQLHPSAPSHFFLNPPTRR 233
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BLAST of mRNA_H-elongata_contig57852.13260.1 vs. uniprot
Match: A0A835Z599_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z599_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.630e-13
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:    7 LQAVVEPGDLLIAINGQSLGSNNFGFEDAIERCSRASMPRRGEAIWVLRFARMWGASAAEIECALGVEACGVFDAEGNPL-----HLVTARLHPSAPPYFHLNSPTR 312
            L  V++P DL++A+NG+ LG   F FE AI   S A  PR       LRFAR+      E+E +  V  C  FD +  P       LVTA++ P AP +F LN PTR
Sbjct:  119 LTTVIQPRDLIVAVNGRVLGGAAFTFEKAIAMLSTAPPPR------TLRFARIPALDPLEVELSTRVTPCATFDIQLPPSPSDMPRLVTAQIDPGAPAFFILNPPTR 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57852.13260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNL1_ECTSI6.420e-3161.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z599_9STRA8.630e-1341.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57852contigH-elongata_contig57852:36..1462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-22_002940.1
Hectar predicted targeting categoryother localisation
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57852.13260.1prot_H-elongata_contig57852.13260.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57852 36..1462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.5149534-CDS-H-elongata_contig57852:35..1781622930939.5149534-CDS-H-elongata_contig57852:35..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57852 36..178 +
1691679633.0012069-CDS-H-elongata_contig57852:35..1781691679633.0012069-CDS-H-elongata_contig57852:35..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57852 36..178 +
1622930939.5347352-CDS-H-elongata_contig57852:481..5691622930939.5347352-CDS-H-elongata_contig57852:481..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57852 482..569 +
1691679633.0136096-CDS-H-elongata_contig57852:481..5691691679633.0136096-CDS-H-elongata_contig57852:481..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57852 482..569 +
1622930939.550369-CDS-H-elongata_contig57852:1378..14621622930939.550369-CDS-H-elongata_contig57852:1378..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57852 1379..1462 +
1691679633.0245547-CDS-H-elongata_contig57852:1378..14621691679633.0245547-CDS-H-elongata_contig57852:1378..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57852 1379..1462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57852.13260.1

>prot_H-elongata_contig57852.13260.1 ID=prot_H-elongata_contig57852.13260.1|Name=mRNA_H-elongata_contig57852.13260.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
WHLQAVVEPGDLLIAINGQSLGSNNFGFEDAIERCSRASMPRRGEAIWVL
RFARMWGASAAEIECALGVEACGVFDAEGNPLHLVTARLHPSAPPYFHLN
SPTRQ
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mRNA from alignment at H-elongata_contig57852:36..1462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57852.13260.1 ID=mRNA_H-elongata_contig57852.13260.1|Name=mRNA_H-elongata_contig57852.13260.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-elongata_contig57852:36..1462+ (Himanthalia elongata Himel1 dioecious)
TGGCATCTTCAGGCCGTGGTCGAGCCCGGAGATCTTCTGATAGCCATCAA
CGGTCAGAGCCTAGGCAGCAACAACTTCGGCTTCGAGGACGCCATCGAAA
GATGCAGCAGGGCGTCCATGCCAAGGCGAGGCGAGGCGATATGGTACCTC
CATATCTCTCAGTCCCTCTATCCGAGCGGAATATTTCGGGGGCTGGCGCC
GGAAAGATGGTATTAAGCGCGAATCCCCGCCGCTAAGGGACAGGATGGTC
GACATCCACGCATCTCTTCGCCCCTTTCCTGTTTCCCGTCCAGTGTACCT
TGTGTGGTAATAAGTCGAAGCGATGCCGATGTCCATCTGCGACTGGGAAT
CTCGTACCGCCGCTCTTCCAGCCCTTTCCTTGGACTGCTCGATTCTCTCG
ATCGGGATGGGGGCGTTGGCTGTCGGTTTTCTGTCGTGTTTGCCAGGGTG
CTTCGATTCGCCCGCATGTGGGGAGCATCTGCCGCGGAGATCGAGTGCGC
TCTGGGCGTTGAAGCCTGCGGTGTGTTTGACGCGGTAAGAAAGACAGAAG
CAGGTAACAACCCCGCGTACGGGGGGAGGGCCCGTCCGCACCGTATCGCG
AGGTGCAGCACCGAGAAATAGGCGTTTTCTACCATTAGACATACCTCTGA
CAGCAAAACCTCGAAATGCTGTAAGATAGTTGGTCCCCTGGACTGGTATC
CCTACGGTACTAAAAAGGCGTGGATGTTCAGATCGTTGGAATTAGTTCAT
ATATATATATTATAAAAATGATTGGAACTATCAACTACGAACGACGTAAA
GAAATTCTCATGTTGGGGTTCATACGTGCGTCCACTGCTGCGATAGGAGA
AAATATGGATGGTGCTACCGTAGTTTCGGTGTACCGTTGAGGGACGAGGT
ATATTGGAAATGGTATAGTATACCACCCCGCCGGCGGTACGTACGATGCC
TGAAATCACTACAACACCCTCCTACTCGTATAAGCACCCCGCGATGGTAT
ATCAAGAAACTATTTTCTAGGTAAAAGGTCAAAACAATTATGCAGAAACA
TCTAGGACGGAAGATGTGCCTCGTCACCTTTGGTAAGCTCTATATGGTCA
CCCCGCAGACGAGGGCAAAAGCTTGACGCCGACCGTGAAGCCTGTGGACG
AAACGATCAACCTCTGCGTAATCAGCGCGCTATGAATTTGGGTCCTAAGA
TCTCGGGATTATATTTTGGTTTGCCAACGCGCGTCGTTTTGATCCTCCTT
TTGATCACACCACACTCACCGCCACTGCGCTCTGGGCAAGGATTCGACCT
CTGTGTTACCACCCACTACCCCACCGCCGCCGCCCCTACGCAGGAAGGAA
ACCCCCTGCACCTCGTGACCGCCCGGCTGCACCCCTCCGCCCCACCGTAC
TTTCACCTCAATTCGCCGACAAGGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig57852:36..1462+

>mRNA_H-elongata_contig57852.13260.1 ID=mRNA_H-elongata_contig57852.13260.1|Name=mRNA_H-elongata_contig57852.13260.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig57852:36..1462+ (Himanthalia elongata Himel1 dioecious)
TGGCATCTTCAGGCCGTGGTCGAGCCCGGAGATCTTCTGATAGCCATCAA
CGGTCAGAGCCTAGGCAGCAACAACTTCGGCTTCGAGGACGCCATCGAAA
GATGCAGCAGGGCGTCCATGCCAAGGCGAGGCGAGGCGATATGTGGCATC
TTCAGGCCGTGGTCGAGCCCGGAGATCTTCTGATAGCCATCAACGGTCAG
AGCCTAGGCAGCAACAACTTCGGCTTCGAGGACGCCATCGAAAGATGCAG
CAGGGCGTCCATGCCAAGGCGAGGCGAGGCGATATGGGTGCTTCGATTCG
CCCGCATGTGGGGAGCATCTGCCGCGGAGATCGAGTGCGCTCTGGGCGTT
GAAGCCTGCGGTGTGTTTGACGCGGGTGCTTCGATTCGCCCGCATGTGGG
GAGCATCTGCCGCGGAGATCGAGTGCGCTCTGGGCGTTGAAGCCTGCGGT
GTGTTTGACGCGGAAGGAAACCCCCTGCACCTCGTGACCGCCCGGCTGCA
CCCCTCCGCCCCACCGTACTTTCACCTCAATTCGCCGACAAGGCAAGAAG
GAAACCCCCTGCACCTCGTGACCGCCCGGCTGCACCCCTCCGCCCCACCG
TACTTTCACCTCAATTCGCCGACAAGGCAA
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