mRNA_H-elongata_contig57786.13248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57786.13248.1
Unique NamemRNA_H-elongata_contig57786.13248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.350e-59
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1
Query:    1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYVG 372
            ++ +AVVGWI+VDQG+RFPG +Y+AIS SV AHDPMVASGNMT++LL VF+LEM+ G A+FGAA+GSGR PG+FG DP  L  NP KKARYEL+EIQHCRLAM AI GIATQAVLNGG FPY G
Sbjct:  112 VAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.540e-38
Identity = 68/123 (55.28%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYV 369
            ++ +AVVGW+ VD GLR PG KY  +S ++ AHD MV+ GNM +ML    +LE+++G A+F AA GSGR PG+F  DP  LA +  K ARY+LSE+++ RLAM A SGIATQAVL G +FPY+
Sbjct:  109 VAMLAVVGWLAVDMGLRLPGTKYMGLS-AISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPYL 230          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.320e-32
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    4 SYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 366
            + +AV+GW+ VD GLR P AKY+  + +V AHD  V SG+MT+ LLA+  LE++ G  ++  + GS RA G+F FDP  L  +P K ARY++SEI++ RLAM A  GIATQAVL  G FPY
Sbjct:  102 AMLAVLGWVAVDMGLRLPVAKYAGYN-AVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A7S1Y167_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y167_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.330e-30
Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCR-----------------------------LAMFAISGIATQAVLNGGTFPY 366
            +  +A +GW+  D G RFPG  YS IS ++ AHD MV +GNM  +L  +FV+E+LSG A++ AA GSGRAPG++GFDP  L  GN  KKA Y L EI++ R                             LAM   SGI TQA L G +FPY
Sbjct:   97 ICMLATLGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 247          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.950e-30
Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCR-----------------------------LAMFAISGIATQAVLNGGTFPY 366
            +  +A +GW+  D G RFPG  YS IS ++ AHD MV +GNM  +L  +FV+E+LSG A++ AA GSGRAPG++GFDP  L  GN  KKA Y L EI++ R                             LAM   SGI TQA L G +FPY
Sbjct:  124 ICMLATLGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 112 bits (279), Expect = 2.630e-28
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 366
            L  +A+VG++ VD G+ FPGA+Y  +S S+ AHD MVASGNM  MLLAV VLE+LS V V  AA GSGR  G+F +DP            +E +EIQH RLAM A SG+ TQ+ L    FPY
Sbjct:   98 LCMLAIVGYLTVDAGIHFPGARYEGLS-SLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A8J5XPQ1_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPQ1_DIALT)

HSP 1 Score: 110 bits (276), Expect = 4.740e-28
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   10 VAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 366
            +AV GW++VD G+ FPGA+Y  +  ++ AH+ MV SGNM ++L+AV +LE+  G+A++  A GSGRA G++ FDP   A +       +L EI++ RLAM A SGI TQA L+G   PY
Sbjct:   82 LAVAGWLVVDLGIHFPGAQYEGLR-ALTAHNAMVESGNMWLLLIAVSILELAGGLALYEQANGSGRAAGDYKFDPLGYAQDEATLQELQLKEIKNGRLAMIAFSGIVTQAALSGRGLPY 199          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 110 bits (276), Expect = 1.820e-27
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCRLAMFAISGIATQAVLNG-GTFPYV 369
            ++ +AV+G + VD G R PGA ++ +  ++ AHD MVA G M ++LLA    E+L G AV+ AA GSGR PG+F  DPF L  G+P +K  ++  EI++ RLAM  ISGI TQA L G   FPY+
Sbjct:  110 VAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYL 234          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 3.510e-27
Identity = 63/127 (49.61%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 LSYVAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPT---KKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYVG 372
            +  +AVVG+   D G R PGA+++  S++  AHD  VA+G M  +LL V   E +S VAV     GSGR PG+FGFDP  L   P    KKA  EL EI HCRLAM A  G+ TQAVL    FPY G
Sbjct:   87 ICQLAVVGFAATDLGFRLPGAEHAVASIA--AHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211          
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6S9U0F0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9U0F0_CHRCT)

HSP 1 Score: 105 bits (261), Expect = 1.680e-25
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   10 VAVVGWIMVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYV 369
            +A VG++  D  L  PG+ Y   +L  DAHD  VASG+M+ +LL + + E++S VA+     GSGRAPGEFGFDP   A + +KKA  E+ E+ + RLAM A SG+ TQAVL G +FPY+
Sbjct:  112 LATVGFVFTDF-LTLPGSIYQVSTL--DAHDVSVASGSMSQLLLWIGIAEIISVVAIQQMLAGSGRAPGEFGFDPMGFAKDASKKADLEMKELANGRLAMMAFSGMVTQAVLTGNSFPYL 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3A4_ECTSI3.350e-5973.39Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CGA6_9STRA1.540e-3855.28Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7UAI7_9STRA1.320e-3252.07Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A7S1Y167_9STRA4.330e-3044.08Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6U4L863_9STRA7.950e-3044.08Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0YCE3_AURAN2.630e-2852.46Uncharacterized protein LHC26 n=1 Tax=Aureococcus ... [more]
A0A8J5XPQ1_DIALT4.740e-2847.06Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A6V1NRI4_HETAK1.820e-2748.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FWB9_ECTSI3.510e-2749.61Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6S9U0F0_CHRCT1.680e-2549.17Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57786contigH-elongata_contig57786:850..1963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue1.5e-42
Seed eggNOG ortholog2880.D7G3A4
Preferred nameLhcr11
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2DDP1@1,2S5ND@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-07_005670.1
Exons2
Model size378
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57786.13248.1prot_H-elongata_contig57786.13248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57786 880..1963 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.0578725-UTR-H-elongata_contig57786:849..8791622930938.0578725-UTR-H-elongata_contig57786:849..879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57786 850..879 +
1691679632.384387-UTR-H-elongata_contig57786:849..8791691679632.384387-UTR-H-elongata_contig57786:849..879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57786 850..879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.0799024-CDS-H-elongata_contig57786:879..10631622930938.0799024-CDS-H-elongata_contig57786:879..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57786 880..1063 +
1691679632.3939037-CDS-H-elongata_contig57786:879..10631691679632.3939037-CDS-H-elongata_contig57786:879..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57786 880..1063 +
1622930938.0947247-CDS-H-elongata_contig57786:1799..19631622930938.0947247-CDS-H-elongata_contig57786:1799..1963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57786 1800..1963 +
1691679632.404239-CDS-H-elongata_contig57786:1799..19631691679632.404239-CDS-H-elongata_contig57786:1799..1963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57786 1800..1963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57786.13248.1

>prot_H-elongata_contig57786.13248.1 ID=prot_H-elongata_contig57786.13248.1|Name=mRNA_H-elongata_contig57786.13248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAV
FGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIA
TQAVLNGGTFPYVGN*
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mRNA from alignment at H-elongata_contig57786:850..1963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57786.13248.1 ID=mRNA_H-elongata_contig57786.13248.1|Name=mRNA_H-elongata_contig57786.13248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1114bp|location=Sequence derived from alignment at H-elongata_contig57786:850..1963+ (Himanthalia elongata Himel1 dioecious)
CTATCGTATGTCGCAGTCGTGGGCTGGATCATGGTGGACCAGGGCCTACG CTTCCCGGGCGCCAAATATTCAGCGATATCCTTGTCCGTCGATGCGCACG ACCCCATGGTGGCCTCGGGCAACATGACCATCATGCTCCTGGCCGTGTTC GTTCTCGAGATGCTTAGTGGGGTCGCCGTCTTCGGCGCGGCAACCGGTTC CGGCCGCGCTCCGGGTGAGAAAATATTGATCGCCTTGGCAAGCTCCTTCG ACGTATGAATACGACTCTTTCATATATACACGCTAAAATAGTAAGACTCA GCGGCGGGCGGGCACTGTAACGCGATCGGATCGCTGTAAATGTAGCCCCT CCTCTTCACCCTAACCCAAAGCAAACCGTCACACGCGGTGGTTCCATATA GTTATGGGCACGAAATGGTCACCATGTATACCCTAGAGGAAGTGGTGTGA GGCCAGAAACTTTGTTCTGTGCTCGTCGTGCAATATTCGCACTGCCTTGC GTTGAAAAAAAGGAAACTTGGACGAAAGCTCTCACAACCTAATTTTACGA ACTTGAATATTGTCGCCCCCGAGGTTCATTTTCATGCACTGACGTCATGC CCCTAGATTCGTACGTTAGCACTCACGACGAGTCCATATTTTCGACCGCG ATGTTCATTAGTCTGTAAAAACGCGAAATTAACCGCGAAACGATTATAAC ACACTATAATAGAGTTAGTCGAGCAACATGTGTGCTGTTGTTGATGCCCC TGTTGTCCCCGTTATGGTTCCCCTGTTTTATGTGGGCGTTACCACCTCCA TGATCAGTTTCAGCCTCGCCCCGCAAAGCTCCAATCAGCCCCAAGTCGCG CGATACGAAATATATACGGAATTGTGCTATGTTATCCAGTGAGAGATGCC GAGTTTCAGAAAGACATTCCACCCACGCTTTGCTCGTGAAACCCCCATAG GCGAATTCGGTTTCGACCCGTTCAAGCTCGCCGGCAACCCGACGAAGAAG GCGCGGTACGAGCTGAGCGAGATCCAGCACTGCCGGCTTGCCATGTTTGC GATCAGCGGCATCGCGACTCAGGCTGTCCTCAACGGCGGCACGTTCCCGT ATGTTGGAAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig57786:850..1963+

>mRNA_H-elongata_contig57786.13248.1 ID=mRNA_H-elongata_contig57786.13248.1|Name=mRNA_H-elongata_contig57786.13248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig57786:850..1963+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGACCAGGGCCTACGCTTCCCGGGCGCCAAATATTCAGCGATATC
CTTGTCCGTCGATGCGCACGACCCCATGGTGGCCTCGGGCAACATGACCA
TCATGCTCCTGGCCGTGTTCGTTCTCGAGATGCTTAGTGGGGTCGCCGTC
TTCGGCGCGGCAACCGGTTCCGGCCGCGCTCCGGATGGTGGACCAGGGCC
TACGCTTCCCGGGCGCCAAATATTCAGCGATATCCTTGTCCGTCGATGCG
CACGACCCCATGGTGGCCTCGGGCAACATGACCATCATGCTCCTGGCCGT
GTTCGTTCTCGAGATGCTTAGTGGGGTCGCCGTCTTCGGCGCGGCAACCG
GTTCCGGCCGCGCTCCGGGCGAATTCGGTTTCGACCCGTTCAAGCTCGCC
GGCAACCCGACGAAGAAGGCGCGGTACGAGCTGAGCGAGATCCAGCACTG
CCGGCTTGCCATGTTTGCGATCAGCGGCATCGCGACTCAGGCTGTCCTCA
ACGGCGGCACGTTCCCGTATGTTGGAAACTAGGCGAATTCGGTTTCGACC
CGTTCAAGCTCGCCGGCAACCCGACGAAGAAGGCGCGGTACGAGCTGAGC
GAGATCCAGCACTGCCGGCTTGCCATGTTTGCGATCAGCGGCATCGCGAC
TCAGGCTGTCCTCAACGGCGGCACGTTCCCGTATGTTGGAAACTAG
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