mRNA_H-elongata_contig57779.13247.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE) HSP 1 Score: 141 bits (355), Expect = 4.340e-36 Identity = 73/134 (54.48%), Postives = 101/134 (75.37%), Query Frame = 1
Query: 10 VEDSQEDK-DPELIGCPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYREDALVLLNFVLDLLRFTAWESGNLRDFEDETTFDDP 408
V +++ED+ DP L+ CP+Y + LA+QAQ+V++ YNY+LDP+IRSA+SL L A+V++DEAHNVEGVCRDAGS+E+S++D +A DLC Q TA A +LL FV+ LL FT+ ES L FE+ET F++P
Sbjct: 326 VSETKEDQADPHLLACPYYLSMALAKQAQIVLMPYNYILDPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACSLGANLLLEFVMKLLYFTSRESLTLEAFENETNFEEP 459
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI) HSP 1 Score: 124 bits (310), Expect = 4.780e-30 Identity = 63/111 (56.76%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 76 LAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYREDALVLLNFVLDLLRFTAWESGNLRDFEDETTFDDP 408
LA+QAQ+V++ YNY+LDP++RSA+SL L A+V++DEAHNVEGVCRDAGS+E+S++D +A DLC Q TA A +LL FV+ LL FT+ ES L FE+ET F++P
Sbjct: 3 LAKQAQIVLMPYNYILDPSVRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACSLGANLLLKFVMKLLYFTSKESRTLEAFENETDFEEP 113
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: R0MF66_NOSB1 (DNA helicase n=2 Tax=Nosema bombycis (strain CQ1 / CVCC 102059) TaxID=578461 RepID=R0MF66_NOSB1) HSP 1 Score: 90.9 bits (224), Expect = 1.730e-18 Identity = 46/129 (35.66%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 49 GCPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYREDALVLLNFVLDLLRFTAWESGNLRDFEDETTFDDPLGLLEGEEV 435
GCP++++ L ++A ++ YNY+LD N+R +LDL++++V+IDEAHNV+ VCR +GS EL I DL ++ A+ ED + L +LDL + + ++DF +T+F+ + + +G+E+
Sbjct: 186 GCPYFASRKLNEKADIIFAPYNYLLDTNVRENTNLDLSNSVVIIDEAHNVDDVCRSSGSFELGNKLIEIICNDLISAIKKAAFFEDVKLDLLNILDLFKKFIEHAPKIKDFN-KTSFNGKMRIKKGKEI 313
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: A0A0Q3LFA9_BRADI (Helicase ATP-binding domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3LFA9_BRADI) HSP 1 Score: 86.3 bits (212), Expect = 7.600e-17 Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 49 GCPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYREDALVLLNFVLDLLRFTAWESGNLRDFEDETTFDDPLGLLEGE 429
GCP+++ +A+ AQLV YNY++ P +R A+ +D++ +IV++DEAHN+E + RDAGSV++ +A +L +L A + L + L+ + + GNLRD E F+ P GE
Sbjct: 241 GCPYFAAQTMAETAQLVFCPYNYLISPIVRRAMDIDISGSIVILDEAHNIEDIARDAGSVDVDEESLTTLAGELANLATNEAVAKIYQPLHEVIEGLINWITDQVGNLRDNE----FEHPASFWTGE 363
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: A0A7S0B927_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B927_9DINO) HSP 1 Score: 84.0 bits (206), Expect = 2.450e-16 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 52 CPFYSNHVLAQQAQLVIVTYNYVLDPNIR-SAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCH 276
CP+Y+ H LAQQA LV Y+YVLDP++R +A +LDL +V++DEAHNVEGVCR+AGS E S+ + L H
Sbjct: 71 CPYYTAHSLAQQADLVFCPYSYVLDPSVRRTAGALDLQGCVVILDEAHNVEGVCREAGSAEFSLDQMRAVIAGLQH 146
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: UPI0010FB8D30 (Fanconi anemia group J protein homolog n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB8D30) HSP 1 Score: 84.3 bits (207), Expect = 3.340e-16 Identity = 45/135 (33.33%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 49 GCPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYREDALVLLNF------VLDLLRFTAWESGNLRDFEDETTFDDPLGLLEGEEV 435
GCP+Y++ LA +A ++ YNY++DP IR ++ +DL +AIV+IDEAHN+E CR AGS+EL+ N +D+ +A R+ + + + +LD+++ R+F D+ FD + + +G+++
Sbjct: 182 GCPYYASRSLADKADIIFAPYNYLIDPRIRESMGIDLKNAIVIIDEAHNIEDFCRSAGSLELN-----NRILDIIQNEVLSALRKGGISVFDIRGDITTILDVIKMFKEYGEEKREF-DKINFDTKIRVRKGKQI 310
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: A0A835GKE5_SPOEX (DNA helicase n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GKE5_SPOEX) HSP 1 Score: 84.3 bits (207), Expect = 3.390e-16 Identity = 35/85 (41.18%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 52 CPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYRED 306
CP+Y +A+ + +V YNY++DP+IRS++S+DL A+V+IDEAHN+EG+CRD SV+++ + N ++L + Q +D
Sbjct: 220 CPYYGARAMAKTSHIVFCPYNYLIDPSIRSSLSIDLKGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIVELEKVSQYRVANQD 304
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: A0A7N0UP03_KALFE (Helicase ATP-binding domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UP03_KALFE) HSP 1 Score: 83.6 bits (205), Expect = 6.620e-16 Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 1
Query: 49 GCPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLC 282
GCP+Y++ +A AQLV YNY+++P IR+A+ +D+N A+V++DEAHN+E V RDAGSV+L + +L +LC
Sbjct: 254 GCPYYASRSMADDAQLVFCPYNYIINPVIRAAMEVDINGAVVILDEAHNIEDVARDAGSVDLEEDALDKLQTELQNLC 331
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: A0A2H1VWR6_SPOFR (DNA helicase n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VWR6_SPOFR) HSP 1 Score: 83.2 bits (204), Expect = 8.490e-16 Identity = 38/97 (39.18%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 52 CPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYREDALVLLNFVLDLL 342
CP+Y +A+ A +V YNY++DP+IRS++S+DL A+V+IDEAHN+EG+CRD SV+++ + N +L + Q +D ++ +L+ L
Sbjct: 134 CPYYGARAMAKTAHIVFCPYNYLIDPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYYIDGLLNTL 230
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Match: A0A2H1VVE1_SPOFR (DNA helicase (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VVE1_SPOFR) HSP 1 Score: 83.2 bits (204), Expect = 8.590e-16 Identity = 38/97 (39.18%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 52 CPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSLDLNDAIVVIDEAHNVEGVCRDAGSVELSVVDTANIAIDLCHLCQRTAYREDALVLLNFVLDLL 342
CP+Y +A+ A +V YNY++DP+IRS++S+DL A+V+IDEAHN+EG+CRD SV+++ + N +L + Q +D ++ +L+ L
Sbjct: 206 CPYYGARAMAKTAHIVFCPYNYLIDPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYYIDGLLNTL 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57779.13247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57779.13247.1 >prot_H-elongata_contig57779.13247.1 ID=prot_H-elongata_contig57779.13247.1|Name=mRNA_H-elongata_contig57779.13247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp SGEVEDSQEDKDPELIGCPFYSNHVLAQQAQLVIVTYNYVLDPNIRSAVSback to top mRNA from alignment at H-elongata_contig57779:284..2107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57779.13247.1 ID=mRNA_H-elongata_contig57779.13247.1|Name=mRNA_H-elongata_contig57779.13247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1824bp|location=Sequence derived from alignment at H-elongata_contig57779:284..2107- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57779:284..2107- >mRNA_H-elongata_contig57779.13247.1 ID=mRNA_H-elongata_contig57779.13247.1|Name=mRNA_H-elongata_contig57779.13247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig57779:284..2107- (Himanthalia elongata Himel1 dioecious)back to top |