mRNA_H-elongata_contig57768.13245.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: D8LR58_ECTSI (Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR58_ECTSI) HSP 1 Score: 176 bits (447), Expect = 2.600e-51 Identity = 95/134 (70.90%), Postives = 99/134 (73.88%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDN-LGPLQVNPVYPSSDLLHTILAVCHP--------------------------ELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
LSPAAL L+FNDVSIFRVGG + SDAMLPVG SD+ LGPLQVNP YPSSDLLHT+LAVCHP ELL SN AGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKW E
Sbjct: 327 LSPAALHLDFNDVSIFRVGGQTVSDAMLPVGHSDSSLGPLQVNPFYPSSDLLHTVLAVCHPVLRQDGTMLGGASGLEGDRDSAEAAQELLNSNAAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWQE 460
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: CLP1_DICDI (Protein CLP1 homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=CLP1_DICDI) HSP 1 Score: 117 bits (294), Expect = 5.240e-29 Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGGVSASDAM-LPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHPE----LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
LSP + L+F DVSI+R GG A+ A LP+GTS + PLQ+ VYPS D+ H+I A+ + + + SN AGF+YV+++DM+ +++ V+SP PG LPSRFL+ GT+KW+E
Sbjct: 347 LSPHYIVLDFKDVSIYRTGGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYVSDIDMETKKITVISPAPGPLPSRFLLLGTLKWME 458
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: A0A835YJV7_9STRA (Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV7_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.400e-28 Identity = 60/129 (46.51%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHP----------------------ELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
L+P L+L + V + RVGG S +LPVG + LGP +V+ V PS DLLH +LAVCHP E+ N AGFVYVTEVDM RRL V+SPCPG LPS +L+ G ++W E
Sbjct: 331 LTPTLLELRMDSVRVCRVGGTQLSGGLLPVGQAALLGPTRVSMVKPSHDLLHAVLAVCHPVLKPDGTALVPGEEGGLDDAGQEIADCNVAGFVYVTEVDMVGRRLVVMSPCPGDLPSAYLLVGGIRWSE 459
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: C1N970_MICPC (Protein CLP1 homolog n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N970_MICPC) HSP 1 Score: 112 bits (279), Expect = 4.580e-27 Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVG-GVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH----PELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
LSP + LEF VSIF++G G SA + LP+G + PL+V+ V PS LL+ +L V H ELL SN AGF++VT+VD+ R L+PCPG LPSR LIAGT+KWIE
Sbjct: 302 LSPHSQTLEFGKVSIFKIGAGPSAPRSALPIGQESSADPLRVSTVAPSMSLLNAVLGVSHGKTQAELLSSNVAGFIFVTDVDVANGRFTYLTPCPGELPSRNLIAGTLKWIE 413
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: A0A7S0SUX6_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SUX6_9CHLO) HSP 1 Score: 108 bits (269), Expect = 4.080e-26 Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVG-GVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH----PELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
LSP + F VSIFRVG G A + LP+G + PL+V+ V PS LL+++LAV H ELL SN AGF+Y+TEVDM R LSP PG LPSR L+AG++KWIE
Sbjct: 219 LSPHSHTAAFGHVSIFRVGSGPRAPSSALPIGKESSADPLRVSTVAPSMSLLNSVLAVSHGKTQAELLSSNVAGFIYITEVDMANSRFTYLSPGPGELPSRNLLAGSLKWIE 330
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: A0A151Z7I4_9MYCE (Protein CLP1 homolog n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z7I4_9MYCE) HSP 1 Score: 108 bits (271), Expect = 7.630e-26 Identity = 50/112 (44.64%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGG-VSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHPE----LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
L P + +EF DV I+R GG A + LP+GT + PLQ++ V P+ D++H+ILA+ + + +LKSN AGF+YVTEV+M+ +++ L+PC G +PS++L+ GT+KW+E
Sbjct: 321 LCPHNVVIEFKDVVIYRTGGGPQAPMSALPIGTQSQIDPLQLSEVSPNPDIIHSILAISYTKQPQNILKSNVAGFLYVTEVNMETKKITALAPCSGPIPSKYLLLGTLKWLE 432
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: F4PRU6_CAVFA (Protein CLP1 homolog n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRU6_CAVFA) HSP 1 Score: 108 bits (270), Expect = 1.050e-25 Identity = 50/112 (44.64%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGG-VSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHPE----LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
L P L+F D+ + + GG +A + LP+G + PLQ+ V PS+D++H+ILAV + + +LKSN AGF+YVTEV+++ +++ VL+PCPG +PS+FL+ GT+KW+E
Sbjct: 320 LCPHFTILDFKDIVVLKTGGGPAAPSSALPIGAQSVIDPLQLQEVTPSTDMIHSILAVSYTKSKQSILKSNIAGFLYVTEVNLETKKMTVLAPCPGLIPSKFLLMGTLKWLE 431
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: D5A9E3_PICSI (Protein CLP1 homolog n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A9E3_PICSI) HSP 1 Score: 108 bits (269), Expect = 1.370e-25 Identity = 49/111 (44.14%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH---PELL-KSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
LSP A + F+D+ I+R GG A + LP+G + P +V PV +SDL+H +LAV + PELL SN AGF+Y+T++D+++++++ ++PCPG LPSR L+AG++ W++
Sbjct: 315 LSPHANVVNFSDLLIYRFGGPQAPRSALPIGAEPSADPTRVAPVTITSDLVHAVLAVSYAKEPELLLSSNVAGFIYITDIDIERKKISYIAPCPGELPSRLLLAGSLTWVD 425
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: L8H014_ACACA (Protein CLP1 homolog n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H014_ACACA) HSP 1 Score: 107 bits (268), Expect = 1.950e-25 Identity = 50/112 (44.64%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGG-VSASDAMLPVGTSDNLGPLQVNPVYPSSDLLHTILAVCH---PE-LLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWIE 321
LSP + ++F D+SI+R+GG A + LP+G + P ++ V PS +++H+I+ V H PE LL++N AGF+Y+T+V+++K++L VL+PCPG LPSRF++ G +KW E
Sbjct: 316 LSPHSTLIDFADISIYRIGGGPRAPSSALPIGAERTITPTKLVEVQPSQEIVHSIIGVSHAKTPEALLETNLAGFLYITDVNVEKKKLTVLAPCPGPLPSRFVVVGALKWYE 427
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Match: Q01DD5_OSTTA (Protein CLP1 homolog n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01DD5_OSTTA) HSP 1 Score: 107 bits (268), Expect = 1.960e-25 Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = 1
Query: 1 LSPAALQLEFNDVSIFRVGGVSASDAM-LPVGTSDNLGPLQVNPVYPSSDLLHTILAVCHP----ELLKSNTAGFVYVTEVDMDKRRLAVLSPCPGSLPSRFLIAGTVKWI 318
L+PA+ F+ +S++R+GG + A LP+G + + P+++ PV PS+ LLH++LAV H +LL SN AGF+Y+TEVDM +++ LSPCPG LPS L+ G +KW+
Sbjct: 314 LAPASQTAYFSQISLYRIGGGPRAPASALPIGQTASTDPMRIAPVVPSTSLLHSVLAVSHGKTQGDLLNSNVAGFIYITEVDMIQKKFTYLSPCPGELPSNVLLVGNLKWL 424 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57768.13245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57768.13245.1 >prot_H-elongata_contig57768.13245.1 ID=prot_H-elongata_contig57768.13245.1|Name=mRNA_H-elongata_contig57768.13245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp LSPAALQLEFNDVSIFRVGGVSASDAMLPVGTSDNLGPLQVNPVYPSSDLback to top mRNA from alignment at H-elongata_contig57768:2357..3452- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57768.13245.1 ID=mRNA_H-elongata_contig57768.13245.1|Name=mRNA_H-elongata_contig57768.13245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1096bp|location=Sequence derived from alignment at H-elongata_contig57768:2357..3452- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57768:2357..3452- >mRNA_H-elongata_contig57768.13245.1 ID=mRNA_H-elongata_contig57768.13245.1|Name=mRNA_H-elongata_contig57768.13245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig57768:2357..3452- (Himanthalia elongata Himel1 dioecious)back to top |