mRNA_H-elongata_contig57733.13241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57733.13241.1
Unique NamemRNA_H-elongata_contig57733.13241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A6H5JQY5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQY5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.880e-28
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHNVPEGLAVALVLHPRGVSKLNT LWCVFTSLPQPLMAVPAFLFVGQFMPFLP+ 
Sbjct:  305 VHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPIG 360
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A835Z5V1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.870e-25
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHNVPEGLAVALVLHPRGVSKLNT LWC+FTSLPQPLMAV A+ FV QF+PFLPV 
Sbjct:  188 VHNVPEGLAVALVLHPRGVSKLNTGLWCIFTSLPQPLMAVLAYAFVEQFLPFLPVG 243
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A836CI09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI09_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.610e-24
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHN+PEGLAVALVLHPRGVSKLNT LWC+FTSLPQPLMAV A+ FV QF+PFLPV 
Sbjct:  207 VHNIPEGLAVALVLHPRGVSKLNTGLWCIFTSLPQPLMAVLAYKFVEQFLPFLPVG 262
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A7S2UW33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW33_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.130e-24
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHNVPEGLAVALVL+PR VSKLN+ALWCVFTSLPQPLMAVPA+LF+  F+P LPV 
Sbjct:   59 VHNVPEGLAVALVLNPRKVSKLNSALWCVFTSLPQPLMAVPAYLFIEHFIPLLPVG 114
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A812VWP9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VWP9_SYMMI)

HSP 1 Score: 95.5 bits (236), Expect = 8.030e-24
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHN+PEGLAVALVL+ RGVSKL TALWC+FTS+PQP+MAVPAF F+ QF P LPV 
Sbjct:   17 VHNIPEGLAVALVLNSRGVSKLRTALWCIFTSIPQPIMAVPAFFFIEQFKPLLPVG 72
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A7S1FWC4_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWC4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.580e-22
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHNVPEGLAVA+VL PRGVSKL+ ALWC+FTS+PQP+MAVPA+LFV  F+PFLP  
Sbjct:  124 VHNVPEGLAVAVVLLPRGVSKLSAALWCIFTSVPQPIMAVPAYLFVEHFIPFLPAG 179
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A7S1FXS5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXS5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.960e-22
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHNVPEGLAVA+VL PRGVSKL+ ALWC+FTS+PQP+MAVPA+LFV  F+PFLP  
Sbjct:  220 VHNVPEGLAVAVVLLPRGVSKLSAALWCIFTSVPQPIMAVPAYLFVEHFIPFLPAG 275
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A1J1EKT9_THETH (Zinc/iron permease n=1 Tax=Thermus thermophilus TaxID=274 RepID=A0A1J1EKT9_THETH)

HSP 1 Score: 87.8 bits (216), Expect = 3.870e-21
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            +HN+PEGLA++LVL PRGVS L  ALW VF+SLPQPLMAVPA+LFV  F PFLPV 
Sbjct:    1 MHNIPEGLAISLVLVPRGVSALGAALWSVFSSLPQPLMAVPAYLFVEAFQPFLPVG 56
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A430UT04_THESC (ZIP family metal transporter (Fragment) n=3 Tax=Thermus scotoductus TaxID=37636 RepID=A0A430UT04_THESC)

HSP 1 Score: 85.9 bits (211), Expect = 3.520e-20
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHN+PEGLA++LVL PRGVS L  ALW VF+SLPQPLMAVPAFLFV  F P LPV 
Sbjct:   18 VHNIPEGLAISLVLIPRGVSVLGAALWSVFSSLPQPLMAVPAFLFVEVFKPALPVG 73
[Close]
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Match: A0A7S2PRV5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRV5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.760e-20
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFMPFLPVS 168
            VHN+PEGLAVA+VL PR VSKL  ++WC+ TSLPQPLMAVPAF+FV  F+P LP+ 
Sbjct:   89 VHNIPEGLAVAIVLLPRRVSKLTASMWCIATSLPQPLMAVPAFMFVNTFVPILPIG 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57733.13241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQY5_9PHAE1.880e-2894.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5V1_9STRA5.870e-2585.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI09_9STRA1.610e-2483.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UW33_9STRA2.130e-2482.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812VWP9_SYMMI8.030e-2476.79Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S1FWC4_9STRA1.580e-2276.79Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A7S1FXS5_9STRA7.960e-2276.79Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1J1EKT9_THETH3.870e-2173.21Zinc/iron permease n=1 Tax=Thermus thermophilus Ta... [more]
A0A430UT04_THESC3.520e-2075.00ZIP family metal transporter (Fragment) n=3 Tax=Th... [more]
A0A7S2PRV5_9STRA3.760e-2069.64Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57733contigH-elongata_contig57733:391..1274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue9.7e-23
Seed eggNOG ortholog2880.D8LTB8
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsCOG0428@1,KOG2474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.111588-CDS-H-elongata_contig57733:390..5071622930937.111588-CDS-H-elongata_contig57733:390..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57733 391..507 -
1691679632.0582564-CDS-H-elongata_contig57733:390..5071691679632.0582564-CDS-H-elongata_contig57733:390..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57733 391..507 -
1622930937.1262867-CDS-H-elongata_contig57733:1202..12741622930937.1262867-CDS-H-elongata_contig57733:1202..1274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57733 1203..1274 -
1691679632.0674195-CDS-H-elongata_contig57733:1202..12741691679632.0674195-CDS-H-elongata_contig57733:1202..1274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57733 1203..1274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57733.13241.1prot_H-elongata_contig57733.13241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57733 391..1274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57733.13241.1

>prot_H-elongata_contig57733.13241.1 ID=prot_H-elongata_contig57733.13241.1|Name=mRNA_H-elongata_contig57733.13241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
VHNVPEGLAVALVLHPRGVSKLNTALWCVFTSLPQPLMAVPAFLFVGQFM
PFLPVSAVCFFL*
back to top

mRNA from alignment at H-elongata_contig57733:391..1274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57733.13241.1 ID=mRNA_H-elongata_contig57733.13241.1|Name=mRNA_H-elongata_contig57733.13241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig57733:391..1274- (Himanthalia elongata Himel1 dioecious)
GTACACAACGTGCCCGAGGGGCTGGCCGTGGCGCTGGTTCTGCATCCTCG
AGGGGTTTCCAAGCTGAACACCGTGAGTGGTCCGCGGCCCGGTTCCCTCA
TTCTGCTGGTACTTGTAGGATTGATTTGTGTGAGAGGTACGGGAGAAAAA
AGGGTAATGCCCGGACGAGAATGACCCCCTACGTACCAGCGTGGGGGTGG
GGGGGGGGGGGGGGGGGGGCGCTTGAGCCCCCCCCTCCCCCCTGCCCCCG
TCGTGTCGCCTCAGGTTTGAGGGTTTGCAGGAAAAGGGCGATTTATTTAT
TTATGGAGTTTTCTAAACAAGGTCAATCTTTTTCCTCTTTATTTCTTCAA
TCCCTTGTATCAGGTTTTTTCTGTTTCTCAGTCGATATCCTTTATAGGTT
GCCCCAGTGGTTCAGTTGGTAATCTCAAAACACTGTCATGTGGAGACGTG
AGTTCAAATCTCGGGCGCAGTCACACGAATTTTGATTTTCTCTCACATCA
TGCCCAATAAATGGAGAAAGATTATTTGGTGGGTACCCAAAATTCGACAC
TTGACGGTCGAGTAGGGAAAGGGACGGCTGAATCCCCTCTCGCGATATAT
TTTTTTAAGGCAAGCACCGCAGAAGGAAGGTAGAAAAATCTTGTATGACC
TTCCTCCTGTGTGACCCCGACTGATGCGTCCACAAGTCTGGCGTCCAGAA
TAAATTGGATAGCAATGTGCTCACCTCTCTTTTTTTTTCTCCTTCTTTTG
TAATTGTCCCTATCCAGGCATTGTGGTGTGTTTTTACCTCGCTCCCGCAG
CCGCTCATGGCGGTCCCGGCATTCCTGTTCGTTGGGCAGTTCATGCCCTT
TTTGCCGGTGAGCGCTGTTTGTTTTTTTCTCTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57733:391..1274-

>mRNA_H-elongata_contig57733.13241.1 ID=mRNA_H-elongata_contig57733.13241.1|Name=mRNA_H-elongata_contig57733.13241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig57733:391..1274- (Himanthalia elongata Himel1 dioecious)
GTACACAACGTGCCCGAGGGGCTGGCCGTGGCGCTGGTTCTGCATCCTCG
AGGGGTTTCCAAGCTGAACACCGTACACAACGTGCCCGAGGGGCTGGCCG
TGGCGCTGGTTCTGCATCCTCGAGGGGTTTCCAAGCTGAACACCGCATTG
TGGTGTGTTTTTACCTCGCTCCCGCAGCCGCTCATGGCGGTCCCGGCATT
CCTGTTCGTTGGGCAGTTCATGCCCTTTTTGCCGGTGAGCGCTGTTTGTT
TTTTTCTCTAAGCATTGTGGTGTGTTTTTACCTCGCTCCCGCAGCCGCTC
ATGGCGGTCCCGGCATTCCTGTTCGTTGGGCAGTTCATGCCCTTTTTGCC
GGTGAGCGCTGTTTGTTTTTTTCTCTAA
back to top