mRNA_H-elongata_contig57691.13238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57691.13238.1
Unique NamemRNA_H-elongata_contig57691.13238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: A0A6H5KHZ3_9PHAE (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHZ3_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 4.220e-54
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGSREILRAD 312
            QIVMYPI+NLRRYR+DIHWYLRALEETVIR L+KLGL G R EGLTGVWV GRKVAAVGVRVKRW+TMHGL+LNVRP+L HFR+IVPCGIDDRPVGS E L A+
Sbjct:  264 QIVMYPIVNLRRYRKDIHWYLRALEETVIRTLAKLGLKGERIEGLTGVWVAGRKVAAVGVRVKRWITMHGLSLNVRPNLEHFRHIVPCGIDDRPVGSLEFLCAE 367
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: D7G634_ECTSI (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G634_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 4.880e-49
Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGSREILRAD 312
            QIVMYPI+NLRRYR+DIHWYLRALEETVIR L+KLGL G R EGLTGVWVEGRKVAAVGVRVKRW+TMHGL+LNVRP L HFR IVP GI++R V S E L A+
Sbjct:  265 QIVMYPIVNLRRYRKDIHWYLRALEETVIRTLAKLGLKGERIEGLTGVWVEGRKVAAVGVRVKRWITMHGLSLNVRPKLEHFRDIVPWGIEERTVSSLEFLCAE 368
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: K8Z3V2_NANGC (Lipoyl(octanoyl) transferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z3V2_NANGC)

HSP 1 Score: 155 bits (393), Expect = 1.380e-45
Identity = 69/97 (71.13%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGS 291
            Q+V YP+++LR Y++D+HWYLRALEE VIR L+ LG+ G R EGLTGVWVEGRKVAAVGV+VKRW+TMHG+ALN+ P + +FR+IVPCGI DRPVGS
Sbjct:   87 QLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGS 183
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: A0A836CFQ0_9STRA (Lipoyl(octanoyl) transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ0_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.140e-45
Identity = 71/103 (68.93%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGSREILRA 309
            Q+V+YP+++LR Y++D+HWY+RALEE VIRAL+KLG+ G R  GLTGVWV G KVAA+GV+++RW TMHGLALNV PDL HFR+IVPCGI  RPVGS E L A
Sbjct:   78 QVVLYPLLDLRCYKQDVHWYMRALEEVVIRALAKLGVRGERIAGLTGVWVGGAKVAAIGVKIRRWHTMHGLALNVHPDLAHFRHIVPCGIGARPVGSLEQLVA 180
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: W7TZT0_9STRA (Lipoyl(octanoyl) transferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZT0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.040e-44
Identity = 69/97 (71.13%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGS 291
            Q+V YP+++LR Y++D+HWYLRALEE VIR L+ LG+ G R EGLTGVWVEGRKVAAVGV+VKRW+TMHG+ALN+ P + +FR+IVPCGI DRPVGS
Sbjct:  161 QLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGS 257
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: A0A3M1TCL4_9CYAN (Octanoyltransferase n=1 Tax=Cyanobacteria bacterium J055 TaxID=2420338 RepID=A0A3M1TCL4_9CYAN)

HSP 1 Score: 154 bits (388), Expect = 1.830e-44
Identity = 70/97 (72.16%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGS 291
            Q+V YPI+NLRRYR+D+HWYLR LEE +IR L KLGL G+R EGLTGVWVEG KVAA+G++V RW++MHG ALNV PDL  F YI+PCGI DRPVGS
Sbjct:   93 QLVGYPILNLRRYRQDLHWYLRQLEEVLIRVLEKLGLQGSRIEGLTGVWVEGCKVAAIGIKVSRWISMHGFALNVCPDLTGFGYIIPCGIADRPVGS 189
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: A0A0G4EFW5_VITBC (Lipoyl(octanoyl) transferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EFW5_VITBC)

HSP 1 Score: 155 bits (393), Expect = 2.760e-44
Identity = 70/103 (67.96%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGS-REILR 306
            Q+V+YPI++LR +++D+HWYLR+LEE +IR L +LG+ G R EGLTGVWVEGRKVAA+GVRV++WVTMHG+ALNV P++ HF  IVPCGI DRPVGS RE +R
Sbjct:  198 QLVLYPIVDLRHHKQDLHWYLRSLEEVIIRTLERLGVEGERIEGLTGVWVEGRKVAAIGVRVRKWVTMHGVALNVDPNMAHFERIVPCGISDRPVGSVRECVR 300
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: UPI0019E4F453 (Lipoyl(Octanoyl) transferase LipB n=1 Tax=Oscillatoriales cyanobacterium LEGE 11467 TaxID=1828826 RepID=UPI0019E4F453)

HSP 1 Score: 153 bits (386), Expect = 3.030e-44
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGS 291
            Q+V YPI+NLR YR+D+HWYLR LEE +I+ L+  GL G R  GLTGVWVEGRKVAA+GV+V RWVTMHG ALNV PDL  F YIVPCGI DRPVGS
Sbjct:  115 QLVAYPILNLRHYRKDLHWYLRQLEEVIIQVLAHYGLPGERIPGLTGVWVEGRKVAAIGVKVSRWVTMHGFALNVCPDLQGFEYIVPCGISDRPVGS 211
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: A0A846A1P3_9CYAN (Octanoyltransferase n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A1P3_9CYAN)

HSP 1 Score: 152 bits (384), Expect = 4.350e-44
Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGS 291
            Q+V YPI+NLR Y++D+HWYLR LEE VIR +++ GLVG+R  GLTGVWVEGRKVAA+G++V RW+TMHG ALNV PDL  F+ IVPCGI DRPVGS
Sbjct:   93 QLVGYPILNLRYYQQDLHWYLRQLEELVIRVIARYGLVGDRIAGLTGVWVEGRKVAAIGIKVSRWITMHGFALNVNPDLSGFQRIVPCGISDRPVGS 189
[Close]
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Match: UPI0016862DA7 (lipoyl(octanoyl) transferase LipB n=1 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI0016862DA7)

HSP 1 Score: 150 bits (379), Expect = 2.090e-43
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 QIVMYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGRKVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGS 291
            Q+V YPI+NLRRY++D+HWYLR LEE VI+A++  GL G R +GLTGVWVEG KVAA+G++V RW+TMHG ALNV PDL  FR IVPCGI DRPVGS
Sbjct:   86 QLVGYPILNLRRYQQDLHWYLRNLEEVVIQAIAPYGLQGERIDGLTGVWVEGHKVAAIGIKVSRWITMHGFALNVCPDLSGFRQIVPCGIADRPVGS 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57691.13238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHZ3_9PHAE4.220e-5483.65Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp... [more]
D7G634_ECTSI4.880e-4979.81Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus si... [more]
K8Z3V2_NANGC1.380e-4571.13Lipoyl(octanoyl) transferase n=2 Tax=Monodopsidace... [more]
A0A836CFQ0_9STRA2.140e-4568.93Lipoyl(octanoyl) transferase n=1 Tax=Tribonema min... [more]
W7TZT0_9STRA1.040e-4471.13Lipoyl(octanoyl) transferase n=1 Tax=Nannochlorops... [more]
A0A3M1TCL4_9CYAN1.830e-4472.16Octanoyltransferase n=1 Tax=Cyanobacteria bacteriu... [more]
A0A0G4EFW5_VITBC2.760e-4467.96Lipoyl(octanoyl) transferase n=2 Tax=Vitrella bras... [more]
UPI0019E4F4533.030e-4472.16Lipoyl(Octanoyl) transferase LipB n=1 Tax=Oscillat... [more]
A0A846A1P3_9CYAN4.350e-4470.10Octanoyltransferase n=1 Tax=Leptolyngbya sp. SIO4C... [more]
UPI0016862DA72.090e-4370.10lipoyl(octanoyl) transferase LipB n=1 Tax=unclassi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57691contigH-elongata_contig57691:2055..2886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue6e-39
Seed eggNOG ortholog2880.D7G634
Preferred nameLIPB
KEGG rclassRC00039,RC00992,RC02867
KEGG koko:K03801
KEGG ReactionR07766,R07769
KEGG Pathwayko00785,ko01100,map00785,map01100
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009249,GO:0009451,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0034641,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051604,GO:0071704,GO:0090304,GO:1900865,GO:1900871,GO:1901360,GO:1901564
EggNOG free text desc.octanoyl transferase activity (acting on glycine-cleavage complex H protein)
EggNOG OGsCOG0321@1,KOG0325@2759
EC2.3.1.181
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBiotin/lipoate A/B protein ligase
Ec32 orthologEc-11_004970.1
Exons2
Model size351
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57691.13238.1prot_H-elongata_contig57691.13238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57691 2064..2886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.732466-UTR-H-elongata_contig57691:2054..20631622930936.732466-UTR-H-elongata_contig57691:2054..2063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57691 2055..2063 +
1691679631.8999147-UTR-H-elongata_contig57691:2054..20631691679631.8999147-UTR-H-elongata_contig57691:2054..2063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57691 2055..2063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.790033-CDS-H-elongata_contig57691:2063..22221622930936.790033-CDS-H-elongata_contig57691:2063..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57691 2064..2222 +
1691679631.912585-CDS-H-elongata_contig57691:2063..22221691679631.912585-CDS-H-elongata_contig57691:2063..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57691 2064..2222 +
1622930936.8058908-CDS-H-elongata_contig57691:2703..28861622930936.8058908-CDS-H-elongata_contig57691:2703..2886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57691 2704..2886 +
1691679631.9231727-CDS-H-elongata_contig57691:2703..28861691679631.9231727-CDS-H-elongata_contig57691:2703..2886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57691 2704..2886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57691.13238.1

>prot_H-elongata_contig57691.13238.1 ID=prot_H-elongata_contig57691.13238.1|Name=mRNA_H-elongata_contig57691.13238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MYPIMNLRRYRRDIHWYLRALEETVIRALSKLGLVGNRAEGLTGVWVEGR
KVAAVGVRVKRWVTMHGLALNVRPDLGHFRYIVPCGIDDRPVGSREILRA
DDYISLPFRLEGSY
back to top

mRNA from alignment at H-elongata_contig57691:2055..2886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57691.13238.1 ID=mRNA_H-elongata_contig57691.13238.1|Name=mRNA_H-elongata_contig57691.13238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=832bp|location=Sequence derived from alignment at H-elongata_contig57691:2055..2886+ (Himanthalia elongata Himel1 dioecious)
CAGATCGTGATGTACCCCATCATGAACCTCCGGCGGTACCGCAGAGACAT
CCACTGGTACTTGCGTGCCCTGGAGGAGACCGTCATCCGTGCTCTGAGCA
AGCTGGGACTGGTCGGGAACAGGGCCGAGGGACTGACAGGAGTGTGGGTA
GAGGGCCGCAAGGTTGCGGTGAGGATCCATGGGGGTTTCTACGGGTGAGG
TGGCGGGACGAGTGACGTAGAGGTCATGGCGTGAAATATATTTGCATCGT
AAAAGTAGCCGTCGCGTGGCTCTGTACCCGCGGGAAGGAATATCTTTGCG
CGTAAATCTCCTTAGTTTTTGACGATCCGGTGGTATTATTGGAGATAAAT
AGAGAGACGGATGGGATGCTTGTGCTCATACCCGCGTGTCAACTGGCTAG
CATGGCACACAGGCAGGTGTGAGGGAGGATTTTCGTGAGAGAAAGATGCC
GCGACGGCGGGAAGCACGGTGTAGTGGGCGCTGCCCTAGCTTGCGGGATC
TTGTGTGTGAACCCACACAACTGAACTTGTGCGATGTGCGGCAAGTTATT
GGAGAATCGTTCTCCTCTTGCCACGCGCTAACTGCGGGTGTTCGCCGCGT
GCTGCCTGGTGTATCCCTCGGCTGCATTCTCTTTTCGATCCCTTGGCAGG
CAGTGGGAGTTCGGGTGAAGCGGTGGGTCACCATGCACGGGCTGGCGCTC
AACGTGCGGCCTGACCTAGGACACTTCCGCTACATCGTTCCTTGTGGTAT
CGATGACCGGCCCGTCGGCTCACGTGAGATCTTACGCGCAGATGATTATA
TTTCTCTCCCTTTCCGCTTGGAAGGGTCGTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57691:2055..2886+

>mRNA_H-elongata_contig57691.13238.1 ID=mRNA_H-elongata_contig57691.13238.1|Name=mRNA_H-elongata_contig57691.13238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig57691:2055..2886+ (Himanthalia elongata Himel1 dioecious)
ATGTACCCCATCATGAACCTCCGGCGGTACCGCAGAGACATCCACTGGTA
CTTGCGTGCCCTGGAGGAGACCGTCATCCGTGCTCTGAGCAAGCTGGGAC
TGGTCGGGAACAGGGCCGAGGGACTGACAGGAGTGTGGGTAGAGGGCCGC
AAGGTTGCGATGTACCCCATCATGAACCTCCGGCGGTACCGCAGAGACAT
CCACTGGTACTTGCGTGCCCTGGAGGAGACCGTCATCCGTGCTCTGAGCA
AGCTGGGACTGGTCGGGAACAGGGCCGAGGGACTGACAGGAGTGTGGGTA
GAGGGCCGCAAGGTTGCGGCAGTGGGAGTTCGGGTGAAGCGGTGGGTCAC
CATGCACGGGCTGGCGCTCAACGTGCGGCCTGACCTAGGACACTTCCGCT
ACATCGTTCCTTGTGGTATCGATGACCGGCCCGTCGGCTCACGTGAGATC
TTACGCGCAGATGATTATATTTCTCTCCCTTTCCGCTTGGAAGGGTCGTA
CGCAGTGGGAGTTCGGGTGAAGCGGTGGGTCACCATGCACGGGCTGGCGC
TCAACGTGCGGCCTGACCTAGGACACTTCCGCTACATCGTTCCTTGTGGT
ATCGATGACCGGCCCGTCGGCTCACGTGAGATCTTACGCGCAGATGATTA
TATTTCTCTCCCTTTCCGCTTGGAAGGGTCGTAC
back to top