mRNA_H-elongata_contig57687.13237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57687.13237.1
Unique NamemRNA_H-elongata_contig57687.13237.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.630e-36
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            AA+RF+  RSWDHIQNK+VGTGHSD+TKFEWATNQHRDSIASH+GH+DLL YFAVAEN A+GRVRYQLLE
Sbjct:   36 AADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 105
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM)

HSP 1 Score: 111 bits (277), Expect = 1.660e-30
Identity = 48/71 (67.61%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QAANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            QAA+RF+  R W+H+Q K+VGTGH+D+TKFEWA NQHRD++ASH+GH+D+L+YFAVAEN ++GRVRY +LE
Sbjct:    2 QAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLE 72
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A662XDD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDD1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.500e-30
Identity = 49/71 (69.01%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QAANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            QAA+RF+  R W+H+Q K+VGTGH+D+TKFEWA NQHRD++ASH+GH+D+L++FAVAEN AIGRVRY +LE
Sbjct:   52 QAADRFNVNRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAFFAVAENEAIGRVRYNMLE 122
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A482SBV5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBV5_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 8.340e-30
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            A +R++  +S++HIQNKHVGTGHSD TKFEWA NQHRDSIAS VGH D+LSYF++A+N +IGRVRYQLLE
Sbjct:    2 ACDRYNFNKSFEHIQNKHVGTGHSDITKFEWAVNQHRDSIASFVGHADMLSYFSLAQNESIGRVRYQLLE 71
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.340e-30
Identity = 46/70 (65.71%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            AA+RF+  R W+H+Q+K+VGTGH+D++KFEWA NQHRD++ASH+GH+D+L+YFAVAEN +IGRVR+ +LE
Sbjct:    2 AADRFNINRQWEHLQSKYVGTGHADTSKFEWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLE 71
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: F0YCR2_AURAN (Splicing factor subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCR2_AURAN)

HSP 1 Score: 108 bits (271), Expect = 1.180e-29
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            AA+R +  RSWDHIQ K+VGTGHSD TKFEWA+NQHRDSIASH+GH D+++YFAVA+  +IGR RY LLE
Sbjct:    2 AADRMNINRSWDHIQAKYVGTGHSDMTKFEWASNQHRDSIASHLGHGDIMTYFAVAQGDSIGRTRYALLE 71
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.330e-29
Identity = 47/70 (67.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            AA+RF+  R W+H+Q K+VGTGH+D++KFEWA NQHRD++ASH+GH D+L+YFAVAEN +IGRVRY +LE
Sbjct:    2 AADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLE 71
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A3R7ANY8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ANY8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.770e-29
Identity = 46/70 (65.71%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            AA+R++  R W+H+Q K+VGTGH+D++KFEWA NQHRD+++SH+GHND+LSYFAVAEN +IGRVR+ +LE
Sbjct:    1 AADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLSSHIGHNDMLSYFAVAENESIGRVRFNMLE 70
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A024TML8_9STRA (Splicing factor subunit n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TML8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.890e-29
Identity = 45/70 (64.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            AA+R++  R W+H+Q K+VGTGH+D++KFEWA NQHRD++ASH+GHND+LSYFAVAEN ++GR+R+ +LE
Sbjct:    2 AADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLSYFAVAENESVGRLRFNMLE 71
[Close]
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.230e-29
Identity = 47/70 (67.14%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 AANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDLLSYFAVAENIAIGRVRYQLLE 213
            AA+RF+  R W+H+Q K+VGTGH+D+TKFEWA NQHRD++ASH+GH+D+L+YFAVAEN ++GRVRY +LE
Sbjct:   45 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLE 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57687.13237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXA2_ECTSI2.630e-3684.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3G531_PHYRM1.660e-3067.61Splicing factor subunit n=20 Tax=Oomycota TaxID=47... [more]
A0A662XDD1_9STRA3.500e-3069.01Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A482SBV5_9ARCH8.340e-3072.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0XHV2_9STRA9.340e-3065.71Splicing factor subunit n=1 Tax=Aphanomyces euteic... [more]
F0YCR2_AURAN1.180e-2971.43Splicing factor subunit n=1 Tax=Aureococcus anopha... [more]
A0A1W0A9Q9_9STRA1.330e-2967.14Splicing factor subunit n=1 Tax=Thraustotheca clav... [more]
A0A3R7ANY8_9STRA1.770e-2965.71Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A024TML8_9STRA1.890e-2964.29Splicing factor subunit n=5 Tax=Saprolegniaceae Ta... [more]
A0A8J5IQX8_9STRA3.230e-2967.14Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57687contigH-elongata_contig57687:2392..3654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.3e-27
Seed eggNOG ortholog2880.D7FXA2
Preferred nameSF3B5
KEGG koko:K08790,ko:K12832,ko:K19485
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045292,GO:0046483,GO:0048232,GO:0048609,GO:0050789,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG3485@1,KOG3485@2759
EC2.7.11.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSplicing factor 3B, subunit 5
Ec32 orthologEc-05_004600.1
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.6760857-CDS-H-elongata_contig57687:2391..24801622930936.6760857-CDS-H-elongata_contig57687:2391..2480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57687 2392..2480 +
1691679631.8787594-CDS-H-elongata_contig57687:2391..24801691679631.8787594-CDS-H-elongata_contig57687:2391..2480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57687 2392..2480 +
1622930936.6921852-CDS-H-elongata_contig57687:3530..36541622930936.6921852-CDS-H-elongata_contig57687:3530..3654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57687 3531..3654 +
1691679631.8897295-CDS-H-elongata_contig57687:3530..36541691679631.8897295-CDS-H-elongata_contig57687:3530..3654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57687 3531..3654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57687.13237.1prot_H-elongata_contig57687.13237.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57687 2392..3654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57687.13237.1

>prot_H-elongata_contig57687.13237.1 ID=prot_H-elongata_contig57687.13237.1|Name=mRNA_H-elongata_contig57687.13237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
QAANRFDNTRSWDHIQNKHVGTGHSDSTKFEWATNQHRDSIASHVGHNDL
LSYFAVAENIAIGRVRYQLLE
back to top

mRNA from alignment at H-elongata_contig57687:2392..3654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57687.13237.1 ID=mRNA_H-elongata_contig57687.13237.1|Name=mRNA_H-elongata_contig57687.13237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1263bp|location=Sequence derived from alignment at H-elongata_contig57687:2392..3654+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGCCAATCGATTTGACAATACCCGAAGCTGGGATCACATCCAAAA
CAAGCACGTGGGCACTGGGCACTCCGATAGCACCAAATTGTGAGTCACGC
CGACTGGACTGAAAATGGGTTGCTGTTTGCACCCTTTAAAGAAAATGTGA
ATCTCTATTAAACCCTCCGGACATCCAGACCTCACACAAGATAATGGGAG
CCACGGCCTTGGACGGGTGGTGGTTGCGGCACTCAATGTCACGGAGTTTT
TGCCCCGACGCTACGGAGTCGTTCTGGACGCAGGTCGGAAGGGCGAGTAA
ACGCTGCTGCTTCGAGGCGTTGACACACACGTCTTCGGGGTGTAACAGAC
CGGGCGACTTAAACAGACCCTGCGTGGTCGAGGAGGACGGGCCGGAAAAC
GCCTCCGTCGGGTAGCCGTATTTCCCGATTTGCGCTCCTGCTGTAGTTAC
ATCTTCCCCCATCTATAACCTTCCTGCCTTTGAAATTCGAGGTGGAAGGT
GGGGTTGGTCGAGGTAGTCTTGAAGCATGGAGCTGTAAAACTGCTACGTG
GAGGGTATGGGTGAGCTCATAAACCTCTCTAGTACATATAGTACATACTC
TTATTATATAGCTTACAGTATATACTCCTGCTGATCCTGCTGAACAATGG
TTGGTTGTTGGAAAGCCCCAGAAAAAAACCCACTAAATTGGGGGGGTATT
AATAGTACTTGGCCAGAAGTATTCACGAGCAGATTATATCTGGACTATAT
TACATACTTATATATATATATGTAAATATATCTTGTTGTGTATGTTGCCT
GCGTGCGGTGCTTATGGGTTTTTGCGGAGGTCGGAGTCCCTTTCCGTCAC
TCTGAATACAGTCGCGCCCAACGAATGGCTCACCTTTTGTTAGCCAGTTT
GTCCAATCAACTCATGGCATACCTGGTTTGGCGTTGTAAACCCAGCCAGG
TCGGTGAAATCCCGGTATATATTTCCGTTCCGGCATGGTTGGGATACGGG
ATGTGTGTCCTATGTCCGTTACGGCATGGTTAGGATACGGGATGCGTCGT
CAACACAAGGACACCCCCGATCCCCGATCCCGTTCCCACGCCCTCCTCCT
CCGTCGTGCCGCCTCCACTGCGCGTGCGATGCGTTGTAGCGAATGGGCAA
CCAACCAGCACCGCGACTCCATAGCGTCGCACGTGGGCCACAACGATCTA
CTGTCGTACTTCGCCGTAGCGGAGAACATTGCCATCGGGCGCGTCCGCTA
CCAGCTGCTCGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57687:2392..3654+

>mRNA_H-elongata_contig57687.13237.1 ID=mRNA_H-elongata_contig57687.13237.1|Name=mRNA_H-elongata_contig57687.13237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig57687:2392..3654+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGCCAATCGATTTGACAATACCCGAAGCTGGGATCACATCCAAAA
CAAGCACGTGGGCACTGGGCACTCCGATAGCACCAAATTCAGGCGGCCAA
TCGATTTGACAATACCCGAAGCTGGGATCACATCCAAAACAAGCACGTGG
GCACTGGGCACTCCGATAGCACCAAATTCGAATGGGCAACCAACCAGCAC
CGCGACTCCATAGCGTCGCACGTGGGCCACAACGATCTACTGTCGTACTT
CGCCGTAGCGGAGAACATTGCCATCGGGCGCGTCCGCTACCAGCTGCTCG
AGCGAATGGGCAACCAACCAGCACCGCGACTCCATAGCGTCGCACGTGGG
CCACAACGATCTACTGTCGTACTTCGCCGTAGCGGAGAACATTGCCATCG
GGCGCGTCCGCTACCAGCTGCTCGAG
back to top