mRNA_H-elongata_contig57666.13234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57666.13234.1
Unique NamemRNA_H-elongata_contig57666.13234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: D8LTB6_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB6_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.800e-32
Identity = 57/73 (78.08%), Postives = 68/73 (93.15%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVCHV 220
            DLQQRDPDTFKPLH+VSMTI+DSA++SAAAA DVL+LCKML+ CDDL++ A+KLLNDFR  +KRTVLHQVCH+
Sbjct:   22 DLQQRDPDTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDAAKLLNDFRIRSKRTVLHQVCHI 94
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.170e-30
Identity = 56/73 (76.71%), Postives = 67/73 (91.78%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVCHV 220
            DLQQRDPDTFKPLH+VSMTI+DSA +SAAAA DVL+LCKML+ CDDL++ A++LLNDFR  +KRTVLHQVCH+
Sbjct:  106 DLQQRDPDTFKPLHVVSMTIRDSANDSAAAAGDVLDLCKMLEDCDDLDSNAAELLNDFRIRSKRTVLHQVCHI 178
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.020e-21
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVCHV 220
            DLQ RDP+TFKPLH+++MTIKDS EESAAAAD VLELC+MLD    L+ + + +L  F   TKRTVLHQVCHV
Sbjct:  320 DLQSRDPETFKPLHVINMTIKDSFEESAAAADSVLELCRMLDGVSQLDDETAGVLEVFTRKTKRTVLHQVCHV 392
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: UPI001CC79605 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC79605)

HSP 1 Score: 61.2 bits (147), Expect = 1.970e-7
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVC 214
            +L  RD +TFKP+H++++ I+D+ EE+   A  + ELC+ +   +D+  +   LL +F   + RT LH VC
Sbjct:  190 ELNSRDQETFKPVHVINVDIQDNEEEATLGAFLICELCECIQQAEDMENEIDDLLQEFEEQSGRTFLHTVC 260
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A1I7Y1C3_9BILA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7Y1C3_9BILA)

HSP 1 Score: 57.0 bits (136), Expect = 2.190e-6
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMT-KRTVLHQVC 214
            D+Q R+ +T + +H++++ I+D+ EE+   A  V+E+CK L+ C DL+ +  ++L DF     KR VLH +C
Sbjct:  104 DMQTREQETGENVHLINLDIQDNHEEATIGALIVVEICKQLEKCADLDNEIDEVLGDFAEKNPKRNVLHTMC 175
[Close]
BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A8C8ZR94_PROSS (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Lemuridae TaxID=9445 RepID=A0A8C8ZR94_PROSS)

HSP 1 Score: 55.5 bits (132), Expect = 9.780e-6
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVC 214
            DL  R+ +T KP+H+V++ I D+ EE+   A  + ELC+ + + +D++   S+LL +F   + R  LH VC
Sbjct:  122 DLNSREQETCKPVHVVNVDIPDNQEEATLGAFLICELCQCIHSLEDVDNDISQLLLNFEKKSGRAFLHTVC 192
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: L9LDJ3_TUPCH (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=L9LDJ3_TUPCH)

HSP 1 Score: 55.1 bits (131), Expect = 1.340e-5
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:    5 LQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVC 214
            L  R+ +TF+P+H++++ IKD+ EE+   A  + ELC+ L   +D+     KLL +    + ++ LH VC
Sbjct:  123 LYSREQETFQPVHVINVDIKDTQEEATLGAFLIYELCQCLQQAEDMEDSVGKLLLEMEEKSGKSFLHTVC 192
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A183CGH0_GLOPA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=3 Tax=Globodera pallida TaxID=36090 RepID=A0A183CGH0_GLOPA)

HSP 1 Score: 54.7 bits (130), Expect = 1.970e-5
Identity = 25/71 (35.21%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:    5 LQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMT-KRTVLHQVC 214
            +Q R+  T + +H+++  I+D+ EE+   A  V+ELCK L+ CDDL+ +  ++L++F     +R +LH +C
Sbjct:  128 MQTRESTTGESVHVINFDIQDNHEEATIGALHVVELCKKLEDCDDLDNELDEVLSEFEANNPERNLLHTIC 198
[Close]
BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: T2M5H2_HYDVU (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M5H2_HYDVU)

HSP 1 Score: 54.7 bits (130), Expect = 2.010e-5
Identity = 23/70 (32.86%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQV 211
            +  +R+P +++P+HI+++ I D+ EE+   A  + ELC+ L+  DDL+   +++L +     KR +LH V
Sbjct:  130 EFNRREPQSYRPVHIINIEIADNHEEATLGAFQICELCEKLEKPDDLDDDIAEILEECERKFKRNILHTV 199
[Close]
BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A8C5W652_MICMU (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Microcebus murinus TaxID=30608 RepID=A0A8C5W652_MICMU)

HSP 1 Score: 53.5 bits (127), Expect = 5.990e-5
Identity = 24/71 (33.80%), Postives = 41/71 (57.75%), Query Frame = 2 
Query:    2 DLQQRDPDTFKPLHIVSMTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVC 214
            DL  R+ +T KP+H+V++ I D+ EE+   A  + ELC+ +   +D+     +LL +F   + +  LH VC
Sbjct:  145 DLNSREQETCKPVHVVNVDIPDNQEEATLGAFLICELCQCIQHLEDMENDIDELLQEFEEKSGKAFLHTVC 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LTB6_ECTSI1.800e-3278.08RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5JLZ3_9PHAE1.170e-3076.71RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE2.020e-2167.12Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
UPI001CC796051.970e-736.62RNA polymerase II subunit A C-terminal domain phos... [more]
A0A1I7Y1C3_9BILA2.190e-637.50RNA polymerase II subunit A C-terminal domain phos... [more]
A0A8C8ZR94_PROSS9.780e-636.62RNA polymerase II subunit A C-terminal domain phos... [more]
L9LDJ3_TUPCH1.340e-534.29RNA polymerase II subunit A C-terminal domain phos... [more]
A0A183CGH0_GLOPA1.970e-535.21RNA polymerase II subunit A C-terminal domain phos... [more]
T2M5H2_HYDVU2.010e-532.86RNA polymerase II subunit A C-terminal domain phos... [more]
A0A8C5W652_MICMU5.990e-533.80RNA polymerase II subunit A C-terminal domain phos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57666contigH-elongata_contig57666:367..3570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPhosphotyrosine protein phosphatase I superfamily
Ec32 orthologEc-21_003270.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size778
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57666.13234.1prot_H-elongata_contig57666.13234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57666 922..3518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.3644311-UTR-H-elongata_contig57666:366..9211622930936.3644311-UTR-H-elongata_contig57666:366..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57666 367..921 -
1691679631.753514-UTR-H-elongata_contig57666:366..9211691679631.753514-UTR-H-elongata_contig57666:366..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57666 367..921 -
1622930936.418077-UTR-H-elongata_contig57666:3518..35701622930936.418077-UTR-H-elongata_contig57666:3518..3570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57666 3519..3570 -
1691679631.7867982-UTR-H-elongata_contig57666:3518..35701691679631.7867982-UTR-H-elongata_contig57666:3518..3570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57666 3519..3570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.3799639-CDS-H-elongata_contig57666:921..10231622930936.3799639-CDS-H-elongata_contig57666:921..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57666 922..1023 -
1691679631.7633908-CDS-H-elongata_contig57666:921..10231691679631.7633908-CDS-H-elongata_contig57666:921..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57666 922..1023 -
1622930936.397648-CDS-H-elongata_contig57666:3449..35181622930936.397648-CDS-H-elongata_contig57666:3449..3518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57666 3450..3518 -
1691679631.7714708-CDS-H-elongata_contig57666:3449..35181691679631.7714708-CDS-H-elongata_contig57666:3449..3518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57666 3450..3518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57666.13234.1

>prot_H-elongata_contig57666.13234.1 ID=prot_H-elongata_contig57666.13234.1|Name=mRNA_H-elongata_contig57666.13234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVL
HQVCHV*
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mRNA from alignment at H-elongata_contig57666:367..3570-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57666.13234.1 ID=mRNA_H-elongata_contig57666.13234.1|Name=mRNA_H-elongata_contig57666.13234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3204bp|location=Sequence derived from alignment at H-elongata_contig57666:367..3570- (Himanthalia elongata Himel1 dioecious)
AGATCTTCAACAGCGCGATCCGGACACGTTCAAGCCGCTGCACATCGTAT
CCATGACCATCAAAGATTCTGCGGAAGAATCCGCAGCCGCGGCAGACGAC
GTCCTTGAATTATGCAAAATGGTAAACAAACAATCCCTACTCTTGTGAAA
AAGTCATCGTTGTTATGGTTATCTCTCAGTTGACATGTTCGAATCACAAA
CAAATGTGTTGGCATTGAGTCGTGGTGTCCTTTTGTAATGGCAACACGGT
GAAGATGTTATTGGGTATGGGGCTTGCTCGTATCAGTAGGCCTTTGGGAT
ACGAAATACGTGATCGCGCGGGCTGCGCAGATGGTGGTGATGTGCACCTA
CCTGCATGCGCGCCATTGGTGCTTACGGGCAACATTTGTCTCTCTTGACA
TTCAGCTAAAAAAGGCGGCGAGAAGCTATCCCACAAAGTCAGCACCCAAA
TGGGGTTGGAATAGTTTTTCCATCAACATCCCCCCCCTGGACGGCCAGAA
GAATATAGGCGTATGGGCGTATGGGATGGATATCAATACGCTTGGGGATA
ACACCACCAGCCAGTCCATCAGTCGAAGGGCCTTGGTTGCCTTATCAGAT
GAGGTGCATCGCGCCTCTCCCCTAGACTGAACGTCTCAAAGAACTGGCAC
ATCAACGCACAGCGAAGCGATAACGTTTCACCTACCACCATGACCGTTGA
GATAAGCCGAGACACCTGCTGGCCAAAGAAAAGGTTTCCTCCTGCGCTTG
ACACAACAAGTGGCTTCAATTCCGGGGATCTCCCGGCACACCACGACGCT
GGACTGTTCCAACAACCCGTCCGAACATAGGGTCTGCCCGGAGTATGGTT
TATCTCGTAGTTTTTTTCTTGTTTCGTCCAGATTGGTGCCTCCGATCCCA
CGACTTCGTTCGTCCTTCTCTCTCCATGCCTCACACGTGCATGGATACGT
TGTTGCTCTCCCTCTGATATTCCTTTATTTTCCCTGTTCCAAGCTCTGCC
TCTAAACCTGGCCCCGGCAATCGACTCCAACTTCATGTTGAAGCGGAAGT
GACCATGTTTCACGACCCCCCCCCACCCCTTTAACCCCTCCTACCCCCCG
CGCGCCCCGCTCTCTCCTAGCCATACATATTCATTCGTTTTTTCCCCCTT
TTCTAAATCTATCTCTGTGAGTGTTAATCTTGCGGGTTGTCCTTTTTTCT
CTATCAATGTTGGCTCCTACAACTAACTGTTGCAAGATGTACGGTTCATT
GGTGGATCATTATCAAATCACCACGAGTATTATTATTTAAAAATGTATAC
GTATACATGGCCTTATTACGTCAAATCAGGAAATGGGTTGCGGAGGAGGG
GACACACGAGTATATCAAACGTCTTTTCCCCGTCTTTGTTGTGGCAAGCT
GCATGGCAAGTTTTATCTTCCCCAAGAGGGACTATTTACGAACATCGTCG
TTCCGTCTTGAAAATAAAGGACGGATTTTATAAGTTATTAGTAGATATGT
CGCAGGAGGCGACGACTGCGTAAAAAGCAGCGACCTGTTCCCCGTAGAAA
ACAGTTTTTCCGTATTTCTCTCGAACCAGTTCTTATTTGATCTTGCTACA
CACCTCTCCGACTGGAAATAATATTTTTATTTAAAAGGCTTTAGGCTCAT
ATTTCGTTAACCATGCATTGTTACATGACGGATAGATTCTCAGAATTAGT
CTTTTTACGAACTTTATTCCCACCCCCATCCCTCTCTATAACCCACTCTC
GGTGGTTATTTATAGGATATAATGTGAGCCGATTCCATTCACCCGATGGA
CTCATTATTGCTGAACACAATTTCTCACGAGCGCTGATACTGTAATACAG
TCCGAAATTAATCGAGATATATGCATAATGCAACCATGTTCTTTACTGAC
CTATATCCTTACAAAATAAATAAATACTCACGTGACGATTTTGTGCTCAA
AGGTAGTAATGTACACATTCCAACCTGACGAATGTTGTTACTCTGGATTG
TAAACTCTCACGGCGCTAAGAAGATGTGGATGTTCGGAGGGTTGGAATGA
GTTCAAGATTTTTTATTAAATAATCTTGGGCGAGAGGGACATATGGTTTA
GTTGTGGACATGAACATTCGGTAGTGGTGACTTTTATATATTTTTACTAT
ATAATACACTGTAGTAATTAACAAAAAATCTCAAACCTACCTCCAAGATT
ATCGTGATTCCTTCATACACAACCTGTAAACTCTATGCGCCCATTATAAC
TGATTTCCTTACAGTATTATTTCCCTCCTCTCTCTCCCCATGTTCGTCTA
TTTCCCTTCGCCTTCGTCCGTCTGCACCCTCAATTGCCACTCACTGGCAT
CTTACCTGCGGACTGTTCTCGCTATCGACGACATCATGGCAATACCGTGC
TATCTGCATATATCTGCCTACACTACGTGTGCCTCGGGACCCGACCTCAC
TCTTATGTTCACGGCATGGCATCATGATGGACGACAATCAATCATCATGG
CGTCGATCTTAAAACATGTCACGGTTCGATTGCCAATCGATTTCCAGCTG
GATGCGTGCGATGACCTGAACGCCAAAGCGTCGAAGCTGCTCAACGACTT
CCGTACAATGACCAAGCGCACGGTTTTGCATCAAGTTTGCCACGTCTGAT
GAATTGATAAGGGACGGGGGTCGCAGGGCACATCACTGCTTCTATATACA
TCGTCGGCTTCACTTCTCTTTAGCGAGGACAAAGAGTTGACTCTTCAAGG
CGACGGGAAATTAGCTCCTTGGGGGGACGGGAAGTTAAACCGACGAAATG
AAGCTGAAAGGATCATTTTTGACCCAATCAAACAAACAAGATAATTATCC
CCATCGTCGTATCGCATCGGGTCTGCTTGTAGTATACGTGGGAGAAGTCG
GATGGTGTTTCGTTTTACGCTGCTGATAATACTATAAATTCAGAGTTGAT
TTTAGAGAACTGCTGGTTACTCGTGATATTCTCCACTCACTCGTTGCCGT
CCATCTCTCTTTCTCGTCCTCCTGGTTGAGAAACTCCCTGACAAGTTGGT
TGGTTATGGCGGTTGATGAACGGATTAGGGATAACACAAAATGCATTTTT
TTTTCACGATACGAAGGTAAAGAAAGGCGCGGTAAAAATCTGCCTGGGGA
TAATAAGGGTTTCCCGCTTCCCTGCCCCTTCCACCTGCTGGGGATAATAA
GCGC
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Coding sequence (CDS) from alignment at H-elongata_contig57666:367..3570-

>mRNA_H-elongata_contig57666.13234.1 ID=mRNA_H-elongata_contig57666.13234.1|Name=mRNA_H-elongata_contig57666.13234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig57666:367..3570- (Himanthalia elongata Himel1 dioecious)
ATGACCATCAAAGATTCTGCGGAAGAATCCGCAGCCGCGGCAGACGACGT
CCTTGAATTATGCAAAATGATGACCATCAAAGATTCTGCGGAAGAATCCG
CAGCCGCGGCAGACGACGTCCTTGAATTATGCAAAATGCTGGATGCGTGC
GATGACCTGAACGCCAAAGCGTCGAAGCTGCTCAACGACTTCCGTACAAT
GACCAAGCGCACGGTTTTGCATCAAGTTTGCCACGTCTGACTGGATGCGT
GCGATGACCTGAACGCCAAAGCGTCGAAGCTGCTCAACGACTTCCGTACA
ATGACCAAGCGCACGGTTTTGCATCAAGTTTGCCACGTCTGA
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