mRNA_H-elongata_contig57655.13233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57655.13233.1
Unique NamemRNA_H-elongata_contig57655.13233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 5.050e-91
Identity = 177/222 (79.73%), Postives = 192/222 (86.49%), Query Frame = 1 
Query:    1 GMTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARVESSGIDGISQDKLLELRAKRLSHKRNTIVSVGDESADTSVDPKFLVADKAIVAQIRAKEICFADRNSILRKEGKSFKFALEYYNQVRRKEKDQARESVDGSYGKRKTRADREARQTSSNRGAT---SGXXXXXXXXXXXXXELAGVTPVIIVPNVLSSLLTLYNAKDFLQDGRRVCFIP 657
            GMT+TEMREAKKAHAQRLENRGGGGSRAGLLSG QDPLL+ R E +GI GISQDKLLELRAKRLSHKRNTIVSVGD++AD  VDPKFL ADK IVA+I A E+  +DRNS+LRKEGKSF+FALEYYNQVRRKEKDQARE+VDG YGKRKTRADREARQ+ S RG T   SG  XXXXXXXXXXX+LAG TPVIIVP V +SL+TLYNA DFLQDG    FIP
Sbjct:  124 GMTDTEMREAKKAHAQRLENRGGGGSRAGLLSG-QDPLLS-RGEGTGIGGISQDKLLELRAKRLSHKRNTIVSVGDDAADNPVDPKFLGADKMIVAKILANEMSISDRNSVLRKEGKSFRFALEYYNQVRRKEKDQARENVDG-YGKRKTRADREARQSGSGRGGTISASGGRXXXXXXXXXXXDLAGATPVIIVPTVPTSLVTLYNATDFLQDGN---FIP 339
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BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Match: A0A835YIM7_9STRA (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.290e-38
Identity = 98/232 (42.24%), Postives = 144/232 (62.07%), Query Frame = 1 
Query:    1 GMTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARV--ESSGIDGISQDKLLELRAKRLSHKRNTI-VSVGDESAD--TSVDPKFLVADKAIVAQIRAKEICFADRNSILRKEGKSFKFALEYYNQVRRKEKDQARESVDGSYGKRKTRA-----DREARQTSSNRGATSGXXXXXXXXXXXXXELAGVTPVIIVPNVLSSLLTLYNAKDFLQDGRRVCFIPGGG 666
            G+TE ++R+AK+ HA+RL    GG +RA  L      +++ R+  ES  ++G+S DKLLELR KRL+ KR+T  +  G E  +   +VDP FL AD+ +VA IRAKEI   DRNS+LR+ GK FKFA +YY +VRRKEK+ A+E  DG+YGK+++R      DR+     ++  A+               +     P+I+VPN+ S+++TL NAK+F ++GR   F+P  G
Sbjct:  135 GLTEDQLRDAKQRHAERL----GGPARARAL------IISDRMAGESELLEGMSSDKLLELRTKRLAQKRSTFSLEAGGEPGEEEAAVDPAFLDADRQMVAHIRAKEIRVLDRNSVLRRPGKDFKFAHDYYQEVRRKEKEMAKEKEDGTYGKKRSRGGGVAPDRDRCAVVASVSASGEFAQCSCVEDAALADPNAGPPIIVVPNLQSAVITLANAKEFFEEGR---FVPANG 353
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BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Match: A0A6H5L1F0_9PHAE (CDC73_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F0_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.640e-28
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 GMTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARVESSGIDGISQDKLLELRAKRLSHKRNTIVS 219
            GMT+TEMREAKKAHAQRLENRGGGGSRAGLLSG QDPLL+ R E +GI GISQDKLLELRAKRLSHKRNTIVS
Sbjct:  124 GMTDTEMREAKKAHAQRLENRGGGGSRAGLLSG-QDPLLS-RGEGTGIGGISQDKLLELRAKRLSHKRNTIVS 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIK5_ECTSI5.050e-9179.73RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A835YIM7_9STRA1.290e-3842.24RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A6H5L1F0_9PHAE2.640e-2889.04CDC73_N domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57655contigH-elongata_contig57655:753..3739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.6
Seed ortholog evalue1e-74
Seed eggNOG ortholog2880.D8LIK5
KEGG koko:K15175
GOsGO:0000122,GO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016591,GO:0016593,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034402,GO:0034622,GO:0034641,GO:0036211,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140110,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
EggNOG OGsCOG5157@1,KOG3786@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase II accessory factor, Cdc73
Ec32 orthologEc-18_003280.1
Exons5
Model size687
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57655.13233.1prot_H-elongata_contig57655.13233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57655 756..3739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.1596456-UTR-H-elongata_contig57655:752..7551622930936.1596456-UTR-H-elongata_contig57655:752..755Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57655 753..755 +
1691679631.68014-UTR-H-elongata_contig57655:752..7551691679631.68014-UTR-H-elongata_contig57655:752..755Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57655 753..755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.1949193-CDS-H-elongata_contig57655:755..9701622930936.1949193-CDS-H-elongata_contig57655:755..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 756..970 +
1691679631.6924872-CDS-H-elongata_contig57655:755..9701691679631.6924872-CDS-H-elongata_contig57655:755..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 756..970 +
1622930936.2158318-CDS-H-elongata_contig57655:1361..14341622930936.2158318-CDS-H-elongata_contig57655:1361..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 1362..1434 +
1691679631.709295-CDS-H-elongata_contig57655:1361..14341691679631.709295-CDS-H-elongata_contig57655:1361..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 1362..1434 +
1622930936.2325816-CDS-H-elongata_contig57655:2540..26331622930936.2325816-CDS-H-elongata_contig57655:2540..2633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 2541..2633 +
1691679631.7209506-CDS-H-elongata_contig57655:2540..26331691679631.7209506-CDS-H-elongata_contig57655:2540..2633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 2541..2633 +
1622930936.2504115-CDS-H-elongata_contig57655:3006..31101622930936.2504115-CDS-H-elongata_contig57655:3006..3110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 3007..3110 +
1691679631.729131-CDS-H-elongata_contig57655:3006..31101691679631.729131-CDS-H-elongata_contig57655:3006..3110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 3007..3110 +
1622930936.2699347-CDS-H-elongata_contig57655:3540..37391622930936.2699347-CDS-H-elongata_contig57655:3540..3739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 3541..3739 +
1691679631.7374883-CDS-H-elongata_contig57655:3540..37391691679631.7374883-CDS-H-elongata_contig57655:3540..3739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57655 3541..3739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57655.13233.1

>prot_H-elongata_contig57655.13233.1 ID=prot_H-elongata_contig57655.13233.1|Name=mRNA_H-elongata_contig57655.13233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARVESSGIDGI
SQDKLLELRAKRLSHKRNTIVSVGDESADTSVDPKFLVADKAIVAQIRAK
EICFADRNSILRKEGKSFKFALEYYNQVRRKEKDQARESVDGSYGKRKTR
ADREARQTSSNRGATSGSSAARGGAGGAGGELAGVTPVIIVPNVLSSLLT
LYNAKDFLQDGRRVCFIPGGGGRDRRER
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mRNA from alignment at H-elongata_contig57655:753..3739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57655.13233.1 ID=mRNA_H-elongata_contig57655.13233.1|Name=mRNA_H-elongata_contig57655.13233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2987bp|location=Sequence derived from alignment at H-elongata_contig57655:753..3739+ (Himanthalia elongata Himel1 dioecious)
GGCATGACCGAAACAGAAATGCGTGAGGCAAAGAAGGCCCACGCCCAGAG
GCTGGAGAACAGAGGGGGTGGGGGAAGTCGCGCGGGGCTGCTGAGTGGCC
CTCAGGACCCTCTGCTGGCGGCGAGGGTGGAGAGCAGCGGGATCGATGGC
ATCTCCCAGGACAAGTTGCTGGAGCTCCGGGCAAAGCGCTTGTCGCACAA
GCGAAACACCATCGTCTCGTGAGCTGCCGCTGCCTCTCTGCTTCCTTTTC
GTTTGGTTTGTTACATTATATACTGGTTTTAGTGAGGAACAGGCGGATGT
ATACCTGTGATGTTTCTATTGTCAAAGTCAAAGTCAGAGTCAGAGGTTTG
ATTTTGGTCTGTTCTGATATGTGCTATGATCGGGTGTGTAGATATTTGAC
GGATCCTGCTTTTCTTCTCGTTCATTCGTTTTTTTTCGGGTTTTTTTTCT
GTTGAATAAAAAAAAAATGTTTTTTTGTCCTTAATTTTAATCTCCCTGCC
TCGATATCGGCACGTCAATCTGTTGTCCGAGTGACCTCTCGGTGCGGATA
ATCAGATCTCTCTCCTCCACCGCCTCTTCCCCCACCTCCTCCTGCTCGTG
ATGGTTCAGGGTAGGCGACGAATCGGCGGACACCTCGGTGGATCCAAAGT
TCTTGGTCGCCGATAAGGCCATCGTCGCGCAGGTACTATCTACTACTACT
ACTACTACTAAAACTATTAATACTACAAGAGTATGGTTGGGTAGATGAGC
TGAGCTTTTATTTTTTAGATGGAGGGGGGATGGATTGGCAAGACTCGGCC
AGGCCAGCGGCGTCCTTTGGTCTCAAAAATATGTACGCCAGCCTCGGCTC
CCATTCGCCTTCTCATCCGCAATCAAGTTAACGAAACTCCGCGGAGGGTT
CGAGGACGGCCGAGTGGGAACTGTAGGACTGCCTCCGATACTTAACTGTA
CACATCCATTGTACTGCCAATAGTGGATAGGGTGTGGAAAAAGAGAGGCG
CACAATAATTGGTCCATGGGGTTACTGTACCTCAGTAGGCTGCTGCACCC
GTTACTCAAGCTACCTTGAGGACTGCTGGCTCAGTGTCGGCGGACTCTCG
ATGGTAAACACCATCGTTATGCAATTGCGTGACATGATACACACGGGATT
GGCCCGATGGCGGTTGACGGTTGACGGTAGAGATGGACACCGTCGCGGAA
AACGAGAGGATCCAGACAGTACGCACTGGATTCAGGCTGGGTTGGGAGAA
TGAGCAGGCTGACGCGAGACGGGACTGTCGAACCCGTGTCGCGAGACCAA
ATTTTCAGGCGCGAACGGGGACAGGGAAAACTAGTATATACTATGTACTG
CATACTATATACTATACTATACTATACACGGGCTGGATTTTGACATCAGC
TTATGTGAGAATTCAATTCAATTCAAATATACTATATATACTATATATAC
TATACTATACACTATATGTGATGACCACATGACAGCGTCTAGATCGCCCG
AGGCCGATTGAACAGACAATGCTAATGTTAGATGCTTATAGAGTAGCAGA
ATATGGTGCTGGACAGAACAAGGGTTTGTATTTGGGCTTGAATGTATAAA
TCTGGGAAGGGGGGGGAGGCTTGGCCTGGTTCGAGGTATATATTTTTTCT
CATCTCTCACTCTTAGTCGTGTGTCGTGTGTCGTCTTTCTTTGTATGTTA
ATATATATATATACAGTATATATATATGGTATACATGTATATTAATTATA
CATGTTTGTGTTTGTTTTGCTTGGTGGGTATATGACAGATTCGTGCGAAG
GAAATATGCTTCGCCGACCGGAACTCCATCCTGAGAAAGGAGGGGAAGAG
TTTCAAGTTCGCCCTAGAGTACTACAACCAGGTGCGAAGCTCTATCTATC
TCTGTCATAGTCTTTCTCTCTGAATCCTATTTATTATCGACTCATCGTAT
GTGTGTTTTCTCTGTGTTATTCCCTTTCTTTCTCTCTATATCATATACCA
TACTATCTACCAGGTATATATGTACACTCTATAGAGCCTATATTACAGTA
CAACATTATTTGTTTGCAATTAAGATCAGATGAGATAAGAGCAAGCCAGC
CTACGGACCGCCGATCAGATTATAGTTCAATCCGCCAACCAATCGACCGA
CCGATCTTTCTATTTTCTTATTTTCTTATTTTCTCTATTTTTATTTCCTT
TTCTTCTGTTTACCTTATACCTCATACCTTCTGTTTATATATATATAAAT
TAAGGTGCGACGTAAGGAAAAAGACCAAGCGCGCGAGAGCGTGGACGGCA
GCTACGGTAAACGAAAGACCAGGGCAGACAGGGAGGCTCGTCAGACCAGC
AGCAACAGGTGCACGGTAGGCCTTAGTCATATAACTAAATCATATGTGTC
AAGTCCGCCCTTCGATTTCCCCTCCCCTGTCTGTGAATGCCCGTGAATGT
TTATGACAACCCATATATATATATATTATTTTTGTATGTTGTGTTTCCTT
AACACGAAGGTGGGGGAATAGGGGAGGAAATTTGCTCCGAGTGCTGTATG
CCGTGCAGGATTGTTTCACCACCCAAGCTGCGATGAACACGCCGCGCTTT
GGAACGATTGGGCAGGGTAGAGCAGCATGTATGGTTCTTGTCGGTTGGTC
AATGCCCCCCCCCGTGTAGCTCTTATATTAAGCTAATCATAGTCTGGTAC
CGTCCCCAGTAGTTTTTGCAGCATTAGGGGGGCATCTTCCAAGGTGCAAC
GAAAAACGATAAAAAAAACGCATCTGACCTGCACGCAGGGGGGCTACTAG
CGGTTCCTCGGCGGCGAGAGGAGGAGCCGGGGGGGCTGGAGGGGAGCTCG
CAGGAGTAACACCGGTGATAATCGTGCCCAACGTACTTTCGTCGCTCCTG
ACACTCTACAACGCCAAGGATTTCCTGCAGGACGGAAGGCGAGTGTGTTT
TATTCCGGGGGGGGGGGGGAGGGACAGAAGGGAGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig57655:753..3739+

>mRNA_H-elongata_contig57655.13233.1 ID=mRNA_H-elongata_contig57655.13233.1|Name=mRNA_H-elongata_contig57655.13233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig57655:753..3739+ (Himanthalia elongata Himel1 dioecious)
ATGACCGAAACAGAAATGCGTGAGGCAAAGAAGGCCCACGCCCAGAGGCT
GGAGAACAGAGGGGGTGGGGGAAGTCGCGCGGGGCTGCTGAGTGGCCCTC
AGGACCCTCTGCTGGCGGCGAGGGTGGAGAGCAGCGGGATCGATGGCATC
TCCCAGGACAAGTTGCTGGAGCTCCGGGCAAAGCGCTTGTCGCACAAGCG
AAACACCATCGTCTCATGACCGAAACAGAAATGCGTGAGGCAAAGAAGGC
CCACGCCCAGAGGCTGGAGAACAGAGGGGGTGGGGGAAGTCGCGCGGGGC
TGCTGAGTGGCCCTCAGGACCCTCTGCTGGCGGCGAGGGTGGAGAGCAGC
GGGATCGATGGCATCTCCCAGGACAAGTTGCTGGAGCTCCGGGCAAAGCG
CTTGTCGCACAAGCGAAACACCATCGTCTCGGTAGGCGACGAATCGGCGG
ACACCTCGGTGGATCCAAAGTTCTTGGTCGCCGATAAGGCCATCGTCGCG
CAGGGTAGGCGACGAATCGGCGGACACCTCGGTGGATCCAAAGTTCTTGG
TCGCCGATAAGGCCATCGTCGCGCAGATTCGTGCGAAGGAAATATGCTTC
GCCGACCGGAACTCCATCCTGAGAAAGGAGGGGAAGAGTTTCAAGTTCGC
CCTAGAGTACTACAACCAGATTCGTGCGAAGGAAATATGCTTCGCCGACC
GGAACTCCATCCTGAGAAAGGAGGGGAAGAGTTTCAAGTTCGCCCTAGAG
TACTACAACCAGGTGCGACGTAAGGAAAAAGACCAAGCGCGCGAGAGCGT
GGACGGCAGCTACGGTAAACGAAAGACCAGGGCAGACAGGGAGGCTCGTC
AGACCAGCAGCAACAGGTGCGACGTAAGGAAAAAGACCAAGCGCGCGAGA
GCGTGGACGGCAGCTACGGTAAACGAAAGACCAGGGCAGACAGGGAGGCT
CGTCAGACCAGCAGCAACAGGGGGGCTACTAGCGGTTCCTCGGCGGCGAG
AGGAGGAGCCGGGGGGGCTGGAGGGGAGCTCGCAGGAGTAACACCGGTGA
TAATCGTGCCCAACGTACTTTCGTCGCTCCTGACACTCTACAACGCCAAG
GATTTCCTGCAGGACGGAAGGCGAGTGTGTTTTATTCCGGGGGGGGGGGG
GAGGGACAGAAGGGAGCGGGGGGGCTACTAGCGGTTCCTCGGCGGCGAGA
GGAGGAGCCGGGGGGGCTGGAGGGGAGCTCGCAGGAGTAACACCGGTGAT
AATCGTGCCCAACGTACTTTCGTCGCTCCTGACACTCTACAACGCCAAGG
ATTTCCTGCAGGACGGAAGGCGAGTGTGTTTTATTCCGGGGGGGGGGGGG
AGGGACAGAAGGGAGCGG
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