mRNA_H-elongata_contig57601.13230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57601.13230.1
Unique NamemRNA_H-elongata_contig57601.13230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A835YYE4_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.310e-35
Identity = 124/162 (76.54%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:    1 PPIVSLMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            P   SLMTDVFGNYV+QKLFD+G   QRE LAS            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VV  TAK+E  YLHSHIQFIID F+GQVEKLS HAYGCRVIQRILEHCID Q+  +LEEI++SFS LIQ
Sbjct:   37 PHAQSLMTDVFGNYVIQKLFDHGGPDQRENLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVCATAKAEGAYLHSHIQFIIDAFMGQVEKLSTHAYGCRVIQRILEHCIDAQRDPVLEEIRNSFSALIQ 198
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BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 9.400e-34
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:  280 VVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            VVSTTAK+E QYLHSHIQFIIDGF+GQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ
Sbjct:  341 VVSTTAKTEGQYLHSHIQFIIDGFVGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 409
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.630e-28
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:  280 VVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIK 462
            VVSTTAK+E QYLHSHIQFIIDGF+GQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIK
Sbjct:  636 VVSTTAKTEGQYLHSHIQFIIDGFVGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIK 696
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A7S2H0V0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0V0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.520e-18
Identity = 56/164 (34.15%), Postives = 73/164 (44.51%), Query Frame = 1 
Query:   16 LMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKS--------ERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLI 483
            L  DVFGNYVVQKL D+G+++ + +L   L G  + LSLQ                                                V+S  AK+        +  +    IQFIID  +G V  LS H YGCRV+QRILEHC+D QK V L+EI     +L+
Sbjct:    3 LRNDVFGNYVVQKLLDHGTSEMKASLRDTLTGEMLTLSLQMYGCRVVQKALETLDDDDLPGLLAEFHQNVLACIHDQNGNHVMQKCIEVMSVKAKAANASGDVQKELFCSGQIQFIIDDVMGNVPGLSCHPYGCRVLQRILEHCVDPQKTVALDEISRCHRLLL 166
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A2G9P1B3_LITCT (PUM-HD domain-containing protein (Fragment) n=2 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9P1B3_LITCT)

HSP 1 Score: 84.0 bits (206), Expect = 7.440e-17
Identity = 75/157 (47.77%), Postives = 87/157 (55.41%), Query Frame = 1 
Query:   16 LMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            LM DVFGNYV+QK F+ GS +Q+ ALA  + GH + L+LQ                             XXXXXXXXXXXXXXXXXXX      +S        +QFIID F  QV  LS H YGCRVIQRILEHC+ EQ   ILEE+      L+Q
Sbjct:   72 LMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINDMVRELDXXXXXXXXXXXXXXXXXXXXXXXQPQS--------LQFIIDAFKSQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQ 220
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: UPI000C7E9CEA (pumilio homolog 1 isoform X7 n=1 Tax=Otolemur garnettii TaxID=30611 RepID=UPI000C7E9CEA)

HSP 1 Score: 86.7 bits (213), Expect = 9.570e-17
Identity = 75/157 (47.77%), Postives = 89/157 (56.69%), Query Frame = 1 
Query:   16 LMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            LM DVFGNYV+QK F+ GS +Q+ ALA  + GH + L+LQ                             XXXXXXXXXXXXXXXXXXX+     +S        +QFIID F GQV  LS H YGCRVIQRILEHC+ +Q   ILEE+      L+Q
Sbjct:  817 LMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDXXXXXXXXXXXXXXXXXXXIECVQPQS--------LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 965
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: UPI000740176F (pumilio homolog 2 isoform X1 n=7 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI000740176F)

HSP 1 Score: 86.7 bits (213), Expect = 9.780e-17
Identity = 75/157 (47.77%), Postives = 88/157 (56.05%), Query Frame = 1 
Query:   16 LMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            LMTDVFGNYV+QK F+ GS  Q+ ALA+ + GH + L+LQ                              XXXXXXXXXXXXXXXXXX+     ++        +QFIID F GQV  LS H YGCRVIQRILEHC  EQ   ILEE+      L+Q
Sbjct:  905 LMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVINEMVRELDGXXXXXXXXXXXXXXXXXXIECVQPQA--------LQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELHQHTEQLVQ 1053
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A8C2D9I9_CYPCA (Pumilio RNA-binding family member 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2D9I9_CYPCA)

HSP 1 Score: 85.9 bits (211), Expect = 1.800e-16
Identity = 75/157 (47.77%), Postives = 86/157 (54.78%), Query Frame = 1 
Query:   16 LMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            LM DVFGNYV+QK F+ GS  Q+ ALA  + GH + L+LQ                              XXXXXXXXXXXXXXXXXX+      +        +QFIID F GQV  LS H YGCRVIQRILEHC+ EQ   ILEEI      L+Q
Sbjct:  817 LMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGXXXXXXXXXXXXXXXXXXIECVQPHA--------LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQLVQ 965
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A8C2D9W4_CYPCA (Pumilio RNA-binding family member 1 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2D9W4_CYPCA)

HSP 1 Score: 85.9 bits (211), Expect = 1.800e-16
Identity = 75/157 (47.77%), Postives = 86/157 (54.78%), Query Frame = 1 
Query:   16 LMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            LM DVFGNYV+QK F+ GS  Q+ ALA  + GH + L+LQ                              XXXXXXXXXXXXXXXXXX+      +        +QFIID F GQV  LS H YGCRVIQRILEHC+ EQ   ILEEI      L+Q
Sbjct:  828 LMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGXXXXXXXXXXXXXXXXXXIECVQPHA--------LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQLVQ 976
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: UPI0015AC6C6B (pumilio homolog 1 isoform X7 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AC6C6B)

HSP 1 Score: 85.9 bits (211), Expect = 1.810e-16
Identity = 87/157 (55.41%), Postives = 99/157 (63.06%), Query Frame = 1 
Query:   16 LMTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 486
            LM DVFGNYV+QK F+ GS  Q+ ALA  + GH + L+LQXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXXX+      +        +QFIID F GQV  LS H YGCRVIQRILEHC+ EQ   ILEE+      L+Q
Sbjct:  882 LMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQXXXXXXXXXXXXXIPSDQQVISEMVRELDGXXXXXXXXXXXXXXXXXXIECVQPHA--------LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLTILEELHQHTEQLVQ 1030
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYE4_9STRA8.310e-3576.54Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
D7FWZ0_ECTSI9.400e-3495.65PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KS31_9PHAE2.630e-2895.08PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2H0V0_9STRA4.520e-1834.15Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A2G9P1B3_LITCT7.440e-1747.77PUM-HD domain-containing protein (Fragment) n=2 Ta... [more]
UPI000C7E9CEA9.570e-1747.77pumilio homolog 1 isoform X7 n=1 Tax=Otolemur garn... [more]
UPI000740176F9.780e-1747.77pumilio homolog 2 isoform X1 n=7 Tax=Lepisosteus o... [more]
A0A8C2D9I9_CYPCA1.800e-1647.77Pumilio RNA-binding family member 1 n=1 Tax=Cyprin... [more]
A0A8C2D9W4_CYPCA1.800e-1647.77Pumilio RNA-binding family member 1 n=2 Tax=Cyprin... [more]
UPI0015AC6C6B1.810e-1655.41pumilio homolog 1 isoform X7 n=1 Tax=Anguilla angu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57601contigH-elongata_contig57601:1352..3671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D7FWZ0
Preferred namePUF2
KEGG koko:K17943,ko:K17944
GOsGO:0000003,GO:0000288,GO:0000956,GO:0001101,GO:0002252,GO:0002376,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006884,GO:0006950,GO:0006952,GO:0006970,GO:0007049,GO:0007097,GO:0007276,GO:0007281,GO:0007338,GO:0007346,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008152,GO:0008285,GO:0008306,GO:0008355,GO:0008361,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009566,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009651,GO:0009819,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009992,GO:0010035,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019725,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030104,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035046,GO:0035770,GO:0036464,GO:0040019,GO:0042048,GO:0042127,GO:0042221,GO:0042592,GO:0043073,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045495,GO:0045786,GO:0045787,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051445,GO:0051446,GO:0051607,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051726,GO:0051728,GO:0051729,GO:0055082,GO:0060184,GO:0060255,GO:0060293,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000243
EggNOG free text desc.mRNA binding
EggNOG OGsCOG5099@1,KOG1488@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons3
Model size486
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57601.13230.1prot_H-elongata_contig57601.13230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57601 1370..3671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.7365959-UTR-H-elongata_contig57601:1351..13691622930935.7365959-UTR-H-elongata_contig57601:1351..1369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57601 1352..1369 +
1691679631.4361773-UTR-H-elongata_contig57601:1351..13691691679631.4361773-UTR-H-elongata_contig57601:1351..1369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57601 1352..1369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.7535179-CDS-H-elongata_contig57601:1369..15731622930935.7535179-CDS-H-elongata_contig57601:1369..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57601 1370..1573 +
1691679631.4533002-CDS-H-elongata_contig57601:1369..15731691679631.4533002-CDS-H-elongata_contig57601:1369..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57601 1370..1573 +
1622930935.7731354-CDS-H-elongata_contig57601:2646..27841622930935.7731354-CDS-H-elongata_contig57601:2646..2784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57601 2647..2784 +
1691679631.46298-CDS-H-elongata_contig57601:2646..27841691679631.46298-CDS-H-elongata_contig57601:2646..2784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57601 2647..2784 +
1622930935.7867055-CDS-H-elongata_contig57601:3545..36711622930935.7867055-CDS-H-elongata_contig57601:3545..3671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57601 3546..3671 +
1691679631.4737296-CDS-H-elongata_contig57601:3545..36711691679631.4737296-CDS-H-elongata_contig57601:3545..3671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57601 3546..3671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57601.13230.1

>prot_H-elongata_contig57601.13230.1 ID=prot_H-elongata_contig57601.13230.1|Name=mRNA_H-elongata_contig57601.13230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCRVVQKAL
EYASIDTLIALVSEFGGQVMKCVQDQNGNHVVQKCIEVVSTTAKSERQYL
HSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDS
FSVLIQ
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mRNA from alignment at H-elongata_contig57601:1352..3671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57601.13230.1 ID=mRNA_H-elongata_contig57601.13230.1|Name=mRNA_H-elongata_contig57601.13230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2320bp|location=Sequence derived from alignment at H-elongata_contig57601:1352..3671+ (Himanthalia elongata Himel1 dioecious)
CCCCCCATTGTCAGCTTGATGACGGACGTGTTCGGAAACTATGTGGTGCA
GAAGCTGTTTGACAATGGCAGCACTAAGCAGCGGGAAGCTCTGGCCAGCT
TCCTCGTGGGGCACGCGGTTCAGCTCTCTCTGCAGATGTACGGCTGCCGC
GTCGTGCAGAAGGCACTCGAGTACGCGTCGATCGACACGCTCATTGCCCT
GGTATCGGAGTTTGGTGGGCAGGTACGATATCTTCTGTATAGTACGGGGG
CACGGCATAGGGTTAACCCTAAAGGAGGGGATTCGTGCGGGGAGTGATAA
TTGTGACTACGTAGTGACGATTTAGTTTGTGACTCTGGGAAAAAATAGCA
AACAATGTTAATTTCATGCAGAGTAAAATAGCCGTTTCTCTGAAACCTAT
ATATACTGGCTGACCGAACCCGCCCCAGAACCCTAACCCACACGCACCAA
CCCATGGGACTGAGAACCTTAATTTGATGGTGGAAACCCCGGGGATGAAC
CATTATATGTCCCCGTCGTCACAAACTAAATTGTGACTACGTAGTTACAA
GAAACATTTCTCGATTCCTGCGACATTTGAAAATTTCTTGCCGAAGATTG
TTTTTTTCGGCGTGATTTGCCGCCATCCTCCCCCCCCCCCCCCCATTCCT
CCCTTTCGCGTACAGTTTTTTTGTGTCCATTCAATTAAGACGTGGTCTGA
AGAGGCAGAAATTGATGTTGACAGGAATTATTTTTTTGCATCATTAGTTA
AATAGCAAGGCATCGGCGAAATATTAATTAAGAACAAAGCTCTTTTCTTT
TCTTTCGAGGGTCGTCAACGGTCCAGCTGTGAAGACGGGTAAACTTGAGT
ACGCCTCCCATTGACATGGAAAACCTAAGCATGCGCCCCACTCAGGTTGG
CTATTGTGGTATGAGGCTGATAAACTGCTACATTTTGGGCACGGCAGTTC
ATGCAGTGTATCGCGTAGCCCCAAAGGCCTCGGTCGAAATGTTTTGTCTT
TTCCGAAAGCCCCTTAGCAACGAGTAGGTTATTAGAAACTACTCTTGCCA
GGAGTCCTCATGATAAAAGTTATGGTTTTGGGTGTGTGTGGATATGCGTA
ACGGCGTTTATGCGTCCGATCAAAAATCAGAGCACCTCCGCGGGTACCAA
AGATGACGCGTAACGAGAGGGCCGAATCTGTCTATGTCTTCGAAAATGCG
CCTCAAATTAGTATGTCCCCCACCCCCCTCCACCGCCTCATCAATGTGTA
TTCTTTTATTTAAATTATTTATTATATATATATACTGTCATCCAGGTGAT
GAAGTGCGTTCAGGACCAAAACGGTAACCATGTGGTTCAAAAGTGTATCG
AGGTCGTCAGCACCACGGCGAAGTCGGAAAGACAATACTTACACTCGCAC
ATTCAGTTCATCATCGACGGCTTCCTCGGGCAGGTGGAGACGAATTTTAT
CCTTTTAATTTTTCAACGAGGCTGTGATTTTTTTTTGAGTGTTTTTTGGA
GGTGGAGAGGTAAAAAGTTGGATTTTGAAGTTTTCTCGGCGGAAGTCCCT
TTGAGTGGTGCAGAGTTTTTTACTCTTTCGTATTGGGAGAATGCTTTTGA
AATTGGTTGAAGATTTGTTTTCGGGGGGAGACGTGGTTGTTTGGGGAGTT
TTTCTCGGTGGAAGTATTGTGCGTCCTTTGAGTTTAGTATAGTTTAAAAA
ACGTTTTTTTAAATGTTCGAAGAAAGTTTTTCAAGTTTCTGTATGTTGGT
GTTATGAGTTAGGTCCTCGTTATAACCATATTGAAAGTGTGTAGGGTTGC
TTGCTCGAGAGATTCTAGAAGATTATTATTTGACTTATCTTCAGACTTTG
TGAAATAAGAACGTCTGTTAGTTTTTAGGAGGGAATGACAAGAGCAATGT
ATATCCTCGCGTATAAGGTGTGCGTGTGATTACTGGTCCCAAAGATTCGG
CGCACATAGCAAGACATGTGGTAAGCCTGAAATAGACTGCTCGAGATTGT
ACCATTGTTTATAGGAAAAATTGAGACGTGTTGGCTGATGGATGGTTTTT
GTTGGTGAAAGACCTTGAGTCCCATTCACCTTCTCGCTCGAACGGTCGTT
GGTACGTGCTCCTCCTCCGCACTTTTATTTACTACACCCTTTTTTCATGT
TTGGTGACGGTTTGATAACGAGGCGTTCTTCTTTTTTTAAACAGGTGGAG
AAGCTGTCGATGCATGCCTACGGGTGCCGGGTGATACAGCGAATACTGGA
GCATTGCATCGACGAGCAAAAGCAGGTCATCCTTGAGGAGATCAAGGATT
CGTTTTCTGTCCTGATTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig57601:1352..3671+

>mRNA_H-elongata_contig57601.13230.1 ID=mRNA_H-elongata_contig57601.13230.1|Name=mRNA_H-elongata_contig57601.13230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig57601:1352..3671+ (Himanthalia elongata Himel1 dioecious)
ATGACGGACGTGTTCGGAAACTATGTGGTGCAGAAGCTGTTTGACAATGG
CAGCACTAAGCAGCGGGAAGCTCTGGCCAGCTTCCTCGTGGGGCACGCGG
TTCAGCTCTCTCTGCAGATGTACGGCTGCCGCGTCGTGCAGAAGGCACTC
GAGTACGCGTCGATCGACACGCTCATTGCCCTGGTATCGGAGTTTGGTGG
GCAGATGACGGACGTGTTCGGAAACTATGTGGTGCAGAAGCTGTTTGACA
ATGGCAGCACTAAGCAGCGGGAAGCTCTGGCCAGCTTCCTCGTGGGGCAC
GCGGTTCAGCTCTCTCTGCAGATGTACGGCTGCCGCGTCGTGCAGAAGGC
ACTCGAGTACGCGTCGATCGACACGCTCATTGCCCTGGTATCGGAGTTTG
GTGGGCAGGTGATGAAGTGCGTTCAGGACCAAAACGGTAACCATGTGGTT
CAAAAGTGTATCGAGGTCGTCAGCACCACGGCGAAGTCGGAAAGACAATA
CTTACACTCGCACATTCAGTTCATCATCGACGGCTTCCTCGGGCAGGTGA
TGAAGTGCGTTCAGGACCAAAACGGTAACCATGTGGTTCAAAAGTGTATC
GAGGTCGTCAGCACCACGGCGAAGTCGGAAAGACAATACTTACACTCGCA
CATTCAGTTCATCATCGACGGCTTCCTCGGGCAGGTGGAGAAGCTGTCGA
TGCATGCCTACGGGTGCCGGGTGATACAGCGAATACTGGAGCATTGCATC
GACGAGCAAAAGCAGGTCATCCTTGAGGAGATCAAGGATTCGTTTTCTGT
CCTGATTCAGGTGGAGAAGCTGTCGATGCATGCCTACGGGTGCCGGGTGA
TACAGCGAATACTGGAGCATTGCATCGACGAGCAAAAGCAGGTCATCCTT
GAGGAGATCAAGGATTCGTTTTCTGTCCTGATTCAG
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