mRNA_H-elongata_contig57528.13225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57528.13225.1
Unique NamemRNA_H-elongata_contig57528.13225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.120e-18
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = -2 
Query:    2 GHASLSVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPP-IDFAIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 286
            G    SV GG VM AGGAI WFS+ QK    ++++ +YVA+A+M  E+  LRQV  FM P  +   I +HEDNEGAI++AK+  S+  ++H+D+ H
Sbjct: 1642 GELKWSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQADYVAMADMGKEILLLRQVWRFMLPKELRPCIPLHEDNEGAIQVAKHPISNSNSKHIDVRH 1737
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5L5J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-16
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPP-IDFAIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG VM AGGAI WFS+ Q+    ++++ EYVA+A+M   + FLRQV  FM P  +     +HEDNEGAI++AK+  S+  ++H+D+ H
Sbjct:  432 SVSGGVVMCAGGAIAWFSKTQECVTLSTTQAEYVAMADMGKVILFLRQVWRFMLPKELRPCSPLHEDNEGAIQIAKHPISNSNSKHIDVRH 522
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.260e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG VM  GG + WFSR QK    +++E EYVA+A+++ E+ FLRQV  FM P      I + EDN+GAI++A N  ++  ++H+D+ H
Sbjct:  184 SVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRH 274
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.510e-16
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG V   GGA+ WFSR QK    +++E EYVAL ++VN++ FL Q+  FM P +    I + EDN+GAI++ +N  S+  ++H+D+ H
Sbjct: 1195 SVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQNPISNSNSKHIDVWH 1285
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.640e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG VM  GG + WFSR QK    +++E EYVA+A+++ E+ FLRQV  FM P      I + EDN+GAI++A N  ++  ++H+D+ H
Sbjct:  301 SVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRH 391
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.430e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG VM  GG + WFSR QK    +++E EYVA+A+++ E+ FLRQV  FM P      I + EDN+GAI++A N  ++  ++H+D+ H
Sbjct: 1335 SVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRH 1425
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.480e-16
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG VM  GG + WFSR QK    +++E EYVA A+++ E+ FLRQV  FM P      I + EDN+GAI++A N  ++  ++H+D+ H
Sbjct:  276 SVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRH 366
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5K6Q0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Q0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.220e-16
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG V   GGA+ WFSR QK    +++E EYVAL ++VNE+  LRQV  FM P +    I + EDN+GAI++A+N  S+  ++H+D+ H
Sbjct:  822 SVSGGIVTCGGGALSWFSRTQKCVTLSTTEAEYVALGDVVNEI--LRQVWRFMLPKVSMPCIPVFEDNQGAIQLAQNPISNSISKHIDVRH 910
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.710e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG V+  GG + WFSR QK  A +++E +YVA+A ++ E+ FLRQV  FM P      I + EDN+GAI++A N  ++   +H+D+ H
Sbjct:  141 SVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVAIANVLKEVLFLRQVWRFMLPDAGIPCIPVFEDNQGAIQIAHNPITNSNPKHIDVRH 231
[Close]
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.180e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = -2 
Query:    2 SVEGGAVMMAGGAIGWFSRVQKVTAAASSEPEYVALAEMVNELRFLRQVKEFMTPPIDF-AIKIHEDNEGAIKMAKNRFSSRRTRHVDIEH 271
            SV GG VM  GG + WFSR QK    +++E EYVA+A+++ E+ FLRQV  FM P      I + EDN+GAI++  N  ++  ++H+D+ H
Sbjct:  239 SVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRH 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57528.13225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7Y0_9PHAE6.120e-1846.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5J6_9PHAE1.240e-1647.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.260e-1645.05Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6V8_9PHAE2.510e-1643.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JEF2_9PHAE2.640e-1645.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE3.430e-1645.05Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE4.480e-1645.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6Q0_9PHAE6.220e-1647.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMV5_9PHAE6.710e-1643.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE7.180e-1643.96Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57528contigH-elongata_contig57528:18..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_000290.2
Exons1
Model size380
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57528.13225.1prot_H-elongata_contig57528.13225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57528 26..376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.7034733-UTR-H-elongata_contig57528:17..251622930934.7034733-UTR-H-elongata_contig57528:17..25Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57528 18..25 +
1691679631.1161315-UTR-H-elongata_contig57528:17..251691679631.1161315-UTR-H-elongata_contig57528:17..25Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57528 18..25 +
1622930934.7429917-UTR-H-elongata_contig57528:376..3971622930934.7429917-UTR-H-elongata_contig57528:376..397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57528 377..397 +
1691679631.140168-UTR-H-elongata_contig57528:376..3971691679631.140168-UTR-H-elongata_contig57528:376..397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57528 377..397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.7246447-CDS-H-elongata_contig57528:25..3761622930934.7246447-CDS-H-elongata_contig57528:25..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57528 26..376 +
1691679631.130877-CDS-H-elongata_contig57528:25..3761691679631.130877-CDS-H-elongata_contig57528:25..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57528 26..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57528.13225.1

>prot_H-elongata_contig57528.13225.1 ID=prot_H-elongata_contig57528.13225.1|Name=mRNA_H-elongata_contig57528.13225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MSTCLVRRLLKRFFAILIAPSLSSCILMAKSIGGVMNSLTCRRKRNSFTI
SASATYSGSDDAAAVTFCTRENQPMAPPAIITAPPSTLSDACPGRCRSLR
RPTLITWSLPPVPLRR*
back to top

mRNA from alignment at H-elongata_contig57528:18..397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57528.13225.1 ID=mRNA_H-elongata_contig57528.13225.1|Name=mRNA_H-elongata_contig57528.13225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=380bp|location=Sequence derived from alignment at H-elongata_contig57528:18..397+ (Himanthalia elongata Himel1 dioecious)
GATGCTCGATGTCCACGTGCCTCGTTCGTCGACTGCTGAAGCGGTTTTTC
GCCATCTTGATTGCGCCTTCGTTGTCCTCGTGTATCTTGATGGCGAAGTC
GATTGGGGGGGTCATGAACTCCTTGACCTGTCGTAGGAAACGCAACTCGT
TTACCATCTCAGCCAGCGCGACGTATTCCGGTTCGGACGACGCCGCCGCC
GTTACCTTTTGCACTCGTGAGAACCAACCAATGGCCCCGCCAGCCATCAT
CACCGCCCCCCCCTCGACACTGAGCGACGCGTGTCCGGGCAGGTGCCGTA
GTCTGCGTCGACCCACGCTAATAACTTGGTCTCTCCCCCCGGTTCCCCTC
CGTAGGTGATCCCGAGGTCCCGAGTGCGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57528:18..397+

>mRNA_H-elongata_contig57528.13225.1 ID=mRNA_H-elongata_contig57528.13225.1|Name=mRNA_H-elongata_contig57528.13225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig57528:18..397+ (Himanthalia elongata Himel1 dioecious)
ATGTCCACGTGCCTCGTTCGTCGACTGCTGAAGCGGTTTTTCGCCATCTT
GATTGCGCCTTCGTTGTCCTCGTGTATCTTGATGGCGAAGTCGATTGGGG
GGGTCATGAACTCCTTGACCTGTCGTAGGAAACGCAACTCGTTTACCATC
TCAGCCAGCGCGACGTATTCCGGTTCGGACGACGCCGCCGCCGTTACCTT
TTGCACTCGTGAGAACCAACCAATGGCCCCGCCAGCCATCATCACCGCCC
CCCCCTCGACACTGAGCGACGCGTGTCCGGGCAGGTGCCGTAGTCTGCGT
CGACCCACGCTAATAACTTGGTCTCTCCCCCCGGTTCCCCTCCGTAGGTG
AATGTCCACGTGCCTCGTTCGTCGACTGCTGAAGCGGTTTTTCGCCATCT
TGATTGCGCCTTCGTTGTCCTCGTGTATCTTGATGGCGAAGTCGATTGGG
GGGGTCATGAACTCCTTGACCTGTCGTAGGAAACGCAACTCGTTTACCAT
CTCAGCCAGCGCGACGTATTCCGGTTCGGACGACGCCGCCGCCGTTACCT
TTTGCACTCGTGAGAACCAACCAATGGCCCCGCCAGCCATCATCACCGCC
CCCCCCTCGACACTGAGCGACGCGTGTCCGGGCAGGTGCCGTAGTCTGCG
TCGACCCACGCTAATAACTTGGTCTCTCCCCCCGGTTCCCCTCCGTAGGT
GA
back to top