mRNA_H-elongata_contig57528.13224.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI) HSP 1 Score: 133 bits (335), Expect = 1.540e-29 Identity = 75/244 (30.74%), Postives = 132/244 (54.10%), Query Frame = 1
Query: 10 EPAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYRDS----RKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKDWRRLRITWDATSRG 726
EPA EA+ S+W + + + +MD + W +V+ P G+ +G+R V+K K D++ + +++K RLVAQGF QV G+ Y E+ +P S+ ++ ++ GW Q+DV AY D+EE +Y+ P Y + V +L+ +YGL +G W+ F +L A+G+ + +++PCV+ R G + + ++ +DD+L+ + T+ + K+W LR T+D T G
Sbjct: 731 EPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYIRQPPGYEKGGSRRKNMVCKLRLPLYGLKQSGRQWNTKFHDKLIARGYTQCKSEPCVYVRRKGGSISIALI-YVDDVLIVAPTEAEVNVE----------KEW--LRATFDVTDGG 961
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 132 bits (331), Expect = 5.210e-29 Identity = 72/225 (32.00%), Postives = 123/225 (54.67%), Query Frame = 1
Query: 13 PAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYRDSRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKD 684
P + +A+ S EW + + E + G W++ E + + ++G+R VF +K+D+ +V +YK RLVAQGF Q+ G+ Y ++ SP ++ ++ WE RQ+D+ AY ++EE I++E PE + D +V +LK +YGL AG +W+K +L GF R ADPCV+ G + + + V +DD+++ ++ + V L F +KD
Sbjct: 855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITI-LTVWVDDIILCGDSESRIDTTVSALKKIFEVKD 1078
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A177TL22_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TL22_9BASI) HSP 1 Score: 130 bits (328), Expect = 1.170e-28 Identity = 77/243 (31.69%), Postives = 133/243 (54.73%), Query Frame = 1
Query: 10 EPAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYRD---SRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKDWRRLRITWDATSRG 726
EPA EA+ +W + + + +M+ + W +VE P G+ +G+R V+K K ++D +++K RLVAQGF QV G+ Y E+ +P S+ ++ ++ GW Q+DV AY D+EE +Y+ P Y +R V +L+ +YGL +G W+ F +L +G+ + +++PCV+ R + G + + ++ +DD+L+ + T + E AV KDW L+ T+D T G
Sbjct: 632 EPATYWEARKRRDWDKWSKAMDEQMNALVGMHTWDLVELPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYIRQPPGYEKKGPNRNLVCRLRLPLYGLKQSGRQWNTKFHKQLIKRGYVQCKSEPCVYVRRIGGSIRIALI-YVDDVLIVAPT--EAEVAVE--------KDW--LKATFDVTDGG 861
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 127 bits (319), Expect = 1.820e-27 Identity = 81/218 (37.16%), Postives = 124/218 (56.88%), Query Frame = 1
Query: 40 SSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYRDSRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRIL--HGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKD 684
++EW ++ E++ GV++ V RP+ + ++G++ VFK K D +VEKYK RLVAQGF QV+GI Y+E+ +P SI ++ ++ WE Q+DV A+ ++EE IY+++P ++ S V +LKKA+YGL A W K EL+ GF R QAD CVF + + H + I V +DD +V S + + DL S F + D
Sbjct: 1007 AAEW---RKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPI---IAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTD 1218
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 126 bits (317), Expect = 2.810e-27 Identity = 73/212 (34.43%), Postives = 126/212 (59.43%), Query Frame = 1
Query: 10 EPAIMGEA---QASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEEIYVELPEAY--RDSRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRIL---HGVVVVVIVVNIDDLLVAS 621
EP M EA + S+EW K+ E + I W++V PKGK V+G++ VFK K D++ V++YK RLVAQG+ Q +G+ Y E SP +I + ++ A WE Q+DV A+ + ++EEIY+ P+ Y ++ V +LKK++YGL + W+ L++ G+++ ++DPC++ + + +GV+++ I ++DD+L+ S
Sbjct: 722 EPINMDEAFSGEHSAEW---KQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSI--HVDDILLFS 928
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A177U0N4_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0N4_9BASI) HSP 1 Score: 126 bits (317), Expect = 2.970e-27 Identity = 71/234 (30.34%), Postives = 127/234 (54.27%), Query Frame = 1
Query: 10 EPAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYRD---SRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKDWRRLR 699
EPA EA+ +W + + +M+ + W +VE P G+ +G+R V+K K ++D +++K RLVAQGF QV G+ Y E+ +P S+ ++ ++ GW Q+DV AY D+EE +Y+ P Y ++ V +L+ +YGL +G W+ F +L +G+ + +++PCV+ R G + + ++ +DD+L+ + T+ + + L S F + D LR
Sbjct: 633 EPATYWEAKRRRDWDKWSTAMDEQMNALVGMHTWDLVELPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYIRQPPGYEKGGPNKNLVCRLRLPLYGLKQSGRQWNTKFHKQLVKRGYVQCKSEPCVYVRRTGGSIRIALI-YVDDVLIVAPTEAEVAIEKKWLKSTFDVTDGGPLR 865
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI) HSP 1 Score: 125 bits (313), Expect = 1.020e-26 Identity = 78/244 (31.97%), Postives = 132/244 (54.10%), Query Frame = 1
Query: 4 DPEPAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYRDSRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKDWRRL------RITWDA 714
D EP + EA+ +WP + I +E+ G W + + P G+ +G++ VFK K D V+KYK RLVAQGF Q G+ YDE+ +P A++ ++ ++ GW A Q+DV AY ++EE IY+ P Y + K V +L KA+YGL AG W L+ +G++R ++D ++ R + V +I + +DD+++ + +R + + L + F + D L ++TW++
Sbjct: 827 DQEPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLEEEIYMRAPPGYAEGDK-VCRLCKALYGLKQAGRTWYIKIDKWLKDQGYERIESDHGLYVRPI--VQDTIIALYVDDVIILTKDERKLTEIKQALSTAFKMTDGGVLSSILGMQVTWES 1067
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.230e-26 Identity = 72/230 (31.30%), Postives = 130/230 (56.52%), Query Frame = 1
Query: 1 LDPEPAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVE-RPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADV-EEIYVELPEAYRDSRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKD 684
++P P + S +L++ + E +G + G + V+ P+G+ + ++ F K +K+ +++ +K RLVA+GF Q+ + Y SSSP P+ ASI ++ ++ G DV AY A + EE++++LP D ++ + ++A+YGL +G W L GF++ +ADPCVF +++ VVV++IV+ +DD+LVA + + D E+ + L FP K+
Sbjct: 533 VEPPPMTVAGVAKSVYRERLEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKN 761
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 123 bits (308), Expect = 1.270e-26 Identity = 74/231 (32.03%), Postives = 128/231 (55.41%), Query Frame = 1
Query: 1 LDPEPAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYR--DSRKQVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKD 684
L+ +P + + + SS + + + EM GVW +VE PKG +G + +FK K D + +YK RLVA+GF Q +GI Y E+ SP ++ S I+ +++ E Q+DV A+ +++E IY+ PE + DS++ V +LK+++YGL A W + F + + GF+ D C++ + G +++V+ +DD+L+AS+ + +R L S F +KD
Sbjct: 3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKD 232
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 122 bits (306), Expect = 3.450e-26 Identity = 77/235 (32.77%), Postives = 130/235 (55.32%), Query Frame = 1
Query: 1 LDPEPAIMGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRKFDKDERVEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASITIVPSMIGALGWEARQLDVDIAYPEADVEE-IYVELPEAYRDSRK-QVGQLKKAMYGLVHAGLLWSKTFGIELEAKGFQRYQADPCVFPRILHGVVVVVIVVNIDDLLVASATKRDEEQAVRDLCSCFPIKDWRRLR 699
++ EP EA + W + +A+E++ W+VV+ P K +G + ++K K++ D +E+YK RLVAQGF Q++GI Y E+ SP S+ ++ A WE Q+DV+ A+ D+EE +Y++LPE ++ + K +V +L+K++YGL A W L+ GFQ+ AD +F G +V+ ++V +DDL++A + E L F IK+ +L+
Sbjct: 80 IEKEPRTYKEAVTDNRW---REAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKLMTALKEYGFQQSLADYSLFTY-RRGNIVMNLLVYVDDLILAGNDNKVCEAFKNFLDRKFGIKNLGQLK 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57528.13224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57528.13224.1 >prot_H-elongata_contig57528.13224.1 ID=prot_H-elongata_contig57528.13224.1|Name=mRNA_H-elongata_contig57528.13224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp MGEAQASSEWPQLKRTIAREMDGQIARGVWQVVERPKGKTVLGARVVFKRback to top mRNA from alignment at H-elongata_contig57528:7..1441- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57528.13224.1 ID=mRNA_H-elongata_contig57528.13224.1|Name=mRNA_H-elongata_contig57528.13224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1435bp|location=Sequence derived from alignment at H-elongata_contig57528:7..1441- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57528:7..1441- >mRNA_H-elongata_contig57528.13224.1 ID=mRNA_H-elongata_contig57528.13224.1|Name=mRNA_H-elongata_contig57528.13224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig57528:7..1441- (Himanthalia elongata Himel1 dioecious)back to top |