mRNA_H-elongata_contig57520.13222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57520.13222.1
Unique NamemRNA_H-elongata_contig57520.13222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57520.13222.1 vs. uniprot
Match: D8LDL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.120e-16
Identity = 63/147 (42.86%), Postives = 78/147 (53.06%), Query Frame = -2 
Query:  499 LGYTAVHQASYHNAVDALEVLIRAGGSLKAVAHDG-FTPLHVAGF--------AASTGAGTFAVIKDKDRRRKGSRPCADSP---SAVQTLARHGGDVDVV-----DTSGSTPLRLACVHKRKRAVADLLSVGANEDLGNLPPSSFV 888
            LGYTAVHQA+Y+NA DAL +L+ +GGS  +    G +TPLHVA          AA   A  F    +             +P   SAV+T+ R+GG  DV+     D  GSTPL  ACV+ +  AV DLL VGANE L  L    FV
Sbjct:  262 LGYTAVHQAAYNNASDALRLLLESGGSASSATDVGHYTPLHVAAAFSTRSSATAAPAPAAGFICPTNXXXXXXXXXXXXXAPAAASAVRTIVRYGGGADVLRVDALDAEGSTPLHTACVNLQDEAVRDLLDVGANEKLFTLSIGDFV 408
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BLAST of mRNA_H-elongata_contig57520.13222.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.040e-6
Identity = 43/107 (40.19%), Postives = 54/107 (50.47%), Query Frame = -2 
Query:  367 AVQTLARHGGDVDVVDTSGSTPLRLACV--HKRKRAVADLL-SVGANE----DLGNLPPSSFVAHNDTAFTATKSEDDAARTLMAMFTGAAADNAWRRRGWLVFLRT 666
            A+ TL  HG  +   DT G+TPL +AC   HK   A  DLL   GA+E    + G  P      H++     T SE +  R  M +   A AD AWRRR WLV LR+
Sbjct:  321 AMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRM-LLARAPADRAWRRRCWLVMLRS 426
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57520.13222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDL7_ECTSI1.120e-1642.86Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LS36_ECTSI5.040e-640.19Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57520contigH-elongata_contig57520:1474..2375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size889
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57520.13222.1prot_H-elongata_contig57520.13222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57520 1664..2374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.5661461-UTR-H-elongata_contig57520:1473..16351622930934.5661461-UTR-H-elongata_contig57520:1473..1635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57520 1474..1635 +
1691679631.0479825-UTR-H-elongata_contig57520:1473..16351691679631.0479825-UTR-H-elongata_contig57520:1473..1635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57520 1474..1635 +
1622930934.5776453-UTR-H-elongata_contig57520:1648..16631622930934.5776453-UTR-H-elongata_contig57520:1648..1663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57520 1649..1663 +
1691679631.0664177-UTR-H-elongata_contig57520:1648..16631691679631.0664177-UTR-H-elongata_contig57520:1648..1663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57520 1649..1663 +
1622930934.6021712-UTR-H-elongata_contig57520:2374..23751622930934.6021712-UTR-H-elongata_contig57520:2374..2375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57520 2375..2375 +
1691679631.08851-UTR-H-elongata_contig57520:2374..23751691679631.08851-UTR-H-elongata_contig57520:2374..2375Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57520 2375..2375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.588714-CDS-H-elongata_contig57520:1663..23741622930934.588714-CDS-H-elongata_contig57520:1663..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57520 1664..2374 +
1691679631.078574-CDS-H-elongata_contig57520:1663..23741691679631.078574-CDS-H-elongata_contig57520:1663..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57520 1664..2374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57520.13222.1

>prot_H-elongata_contig57520.13222.1 ID=prot_H-elongata_contig57520.13222.1|Name=mRNA_H-elongata_contig57520.13222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
MSLGSVAAVILANQAIDPAAAVATAPGNDFATIDAFEVPQYVAHPSIVHY
GATTPLPNILERARTQKNKPAPPPPSIVCRGTGEHRHEGPSGVIFAFCCC
EGRVVVGDERARRQVTQILVCTHTQEVCHRSFPLVDTSKTQRGTARSVDH
VHIAAMSCEGLHRRGAVGTRAAALSTPVLVLDHSESSGAGRRSKSGDMKR
SKSVMRYRFEASPCSDENFKGIDRVMIRGLVHRGVS*
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mRNA from alignment at H-elongata_contig57520:1474..2375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57520.13222.1 ID=mRNA_H-elongata_contig57520.13222.1|Name=mRNA_H-elongata_contig57520.13222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=902bp|location=Sequence derived from alignment at H-elongata_contig57520:1474..2375+ (Himanthalia elongata Himel1 dioecious)
CCGGTCAGAGGAAGGACGCAATCTTGCGAAATATTTTGTCGTCCTCGATG
AAGACCATCCTCATCACCGCCTCGAAAAATCCGTCCAAGGAACGGCCGCC
GGCGAGCACTCCGCGTCCATCGTTCGCGTGTACGCTGTACTTGCTGAATC
CACGATCACAACGTCTTGAAATTAGGCCCACCTCTAGAGCATGTCGCTTG
GTTCTGTGGCCGCGGTCATCCTTGCTAACCAAGCGATCGATCCGGCTGCT
GCTGTTGCCACAGCGCCCGGTAATGACTTCGCTACAATTGACGCGTTTGA
AGTCCCCCAATATGTCGCTCATCCTTCCATCGTTCACTATGGAGCTACCA
CGCCGTTGCCGAACATACTTGAGCGCGCGCGTACGCAAAAAAACAAGCCA
GCCCCGCCGCCGCCAAGCATTGTCTGCCGCGGCACCGGTGAACATCGCCA
TGAGGGTCCTAGCGGCGTCATCTTCGCTTTTTGTTGCTGTGAAGGCCGTG
TCGTTGTGGGCGACGAAAGAGCTCGGCGGCAAGTTACCCAGATCCTCGTT
TGCACCCACACTCAGGAGGTCTGCCACCGCTCGTTTCCTCTTGTGGACAC
AAGCAAGACGCAGCGGGGTACTGCCCGAAGTGTCGACCACGTCCACATCG
CCGCCATGTCGTGCGAGGGTTTGCACCGCAGAGGGGCTGTCGGCACAAGG
GCGGCTGCCCTTTCGACGCCTGTCCTTGTCCTTGATCACAGCGAAAGTTC
CGGCGCCGGTAGACGCAGCAAATCCGGCGACATGAAGCGGAGTAAATCCG
TCATGCGCTACCGCTTTGAGGCTTCCCCCTGCTCTGATGAGAACTTCAAG
GGCATCGACCGCGTTATGATACGAGGCTTGGTGCACCGCGGTGTATCCTA
GC
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Coding sequence (CDS) from alignment at H-elongata_contig57520:1474..2375+

>mRNA_H-elongata_contig57520.13222.1 ID=mRNA_H-elongata_contig57520.13222.1|Name=mRNA_H-elongata_contig57520.13222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig57520:1474..2375+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCTTGGTTCTGTGGCCGCGGTCATCCTTGCTAACCAAGCGATCGA
TCCGGCTGCTGCTGTTGCCACAGCGCCCGGTAATGACTTCGCTACAATTG
ACGCGTTTGAAGTCCCCCAATATGTCGCTCATCCTTCCATCGTTCACTAT
GGAGCTACCACGCCGTTGCCGAACATACTTGAGCGCGCGCGTACGCAAAA
AAACAAGCCAGCCCCGCCGCCGCCAAGCATTGTCTGCCGCGGCACCGGTG
AACATCGCCATGAGGGTCCTAGCGGCGTCATCTTCGCTTTTTGTTGCTGT
GAAGGCCGTGTCGTTGTGGGCGACGAAAGAGCTCGGCGGCAAGTTACCCA
GATCCTCGTTTGCACCCACACTCAGGAGGTCTGCCACCGCTCGTTTCCTC
TTGTGGACACAAGCAAGACGCAGCGGGGTACTGCCCGAAGTGTCGACCAC
GTCCACATCGCCGCCATGTCGTGCGAGGGTTTGCACCGCAGAGGGGCTGT
CGGCACAAGGGCGGCTGCCCTTTCGACGCCTGTCCTTGTCCTTGATCACA
GCGAAAGTTCCGGCGCCGGTAGACGCAGCAAATCCGGCGACATGAAGCGG
AGTAAATCCGTCATGCGCTACCGCTTTGAGGCTTCCCCCTGCTCTGATGA
GAACTTCAAGGGCATCGACCGCGTTATGATACGAGGCTTGGTGCACCGCG
GTGTATCCTAGATGTCGCTTGGTTCTGTGGCCGCGGTCATCCTTGCTAAC
CAAGCGATCGATCCGGCTGCTGCTGTTGCCACAGCGCCCGGTAATGACTT
CGCTACAATTGACGCGTTTGAAGTCCCCCAATATGTCGCTCATCCTTCCA
TCGTTCACTATGGAGCTACCACGCCGTTGCCGAACATACTTGAGCGCGCG
CGTACGCAAAAAAACAAGCCAGCCCCGCCGCCGCCAAGCATTGTCTGCCG
CGGCACCGGTGAACATCGCCATGAGGGTCCTAGCGGCGTCATCTTCGCTT
TTTGTTGCTGTGAAGGCCGTGTCGTTGTGGGCGACGAAAGAGCTCGGCGG
CAAGTTACCCAGATCCTCGTTTGCACCCACACTCAGGAGGTCTGCCACCG
CTCGTTTCCTCTTGTGGACACAAGCAAGACGCAGCGGGGTACTGCCCGAA
GTGTCGACCACGTCCACATCGCCGCCATGTCGTGCGAGGGTTTGCACCGC
AGAGGGGCTGTCGGCACAAGGGCGGCTGCCCTTTCGACGCCTGTCCTTGT
CCTTGATCACAGCGAAAGTTCCGGCGCCGGTAGACGCAGCAAATCCGGCG
ACATGAAGCGGAGTAAATCCGTCATGCGCTACCGCTTTGAGGCTTCCCCC
TGCTCTGATGAGAACTTCAAGGGCATCGACCGCGTTATGATACGAGGCTT
GGTGCACCGCGGTGTATCCTAG
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