|
|
Homology
BLAST of mRNA_H-elongata_contig57514.13221.1 vs. uniprot
Match: D8LC27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC27_ECTSI) HSP 1 Score: 224 bits (570), Expect = 1.170e-62 Identity = 180/364 (49.45%), Postives = 216/364 (59.34%), Query Frame = 1
Query: 1 QRRSDLKKEAIRAKRGPYQAFDDEEFEGEIGPGAKRKVLSHYDEVKKDGPRLTLGQGGTARDGXXXXXXXXXXXXXXXXXXXXXXXVEVKDASEYFTTEEMVKMRKXXXXXXXRLRKREEAGASSSLGLEAAIQDSSNSSAIGGA-------------------------DHGSRATRAVK---GEESSNG-DSSKRFERAMEKASVRANEKLADSFAKPPTPIDQIAPPLXXXXXXXXXXXXXXXADPMPFAEELDTDLGVSLARARRLAQMKEKARERKARDVGEASQQVLSQRRVKTELVEQG---------------------------VAVKKELKEEEEGAEGAIVFTSTTEFTTRLE 924
+RR +L KEAIRAKRG YQA+DDEEFEGEIGPGA+RKVLSHYDE KK+GPRLTLGQGGTARD V+VKDASEY+TTEEM K +K XXXXXX LGLEAA+ DSS DHGSRA+RA + E++ G D KRF+ A+ +A RA+EKLADSFAKPP XXXXXXXXXXXX +P FAEELD+DLGVSLARARRLAQMK+KA+ RK+RD+GEA + +++++VKTE E+G V+VK+E+ G +G +VFTSTTEFT+RLE
Sbjct: 336 ERRKELDKEAIRAKRGAYQAYDDEEFEGEIGPGAERKVLSHYDEAKKEGPRLTLGQGGTARDAAAAEGGEEGEKKKVLESLK----VDVKDASEYYTTEEMAKFKKPXXXXXXXXXXXXXXXXXXXLGLEAALHDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGSRASRAARLAASEKADRGEDKRKRFDTALARAGERASEKLADSFAKPPX------------XXXXXXXXXXXXXEPEAFAEELDSDLGVSLARARRLAQMKDKAKARKSRDIGEAVRDAMARKKVKTEAAEEGPKAEDNXXXXXXXXXXXXMAVDXXXXXVSVKEEV-----GGDGGMVFTSTTEFTSRLE 678
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 227.3 |
| Seed ortholog evalue | 1e-56 |
| Seed eggNOG ortholog | 2880.D8LC27 |
| Preferred name | SART1 |
| KEGG ko | ko:K01301,ko:K11984,ko:K12811,ko:K12836,ko:K12858 |
| KEGG Pathway | ko03040,ko05131,map03040,map05131 |
| KEGG Module | M00354 |
| GOs | GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000481,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016604,GO:0016607,GO:0019222,GO:0022407,GO:0022409,GO:0022607,GO:0022613,GO:0022618,GO:0030155,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045580,GO:0045582,GO:0045583,GO:0045585,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046483,GO:0046540,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0051094,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1902494,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990904,GO:2000026 |
| EggNOG free text desc. | maturation of 5S rRNA |
| EggNOG OGs | KOG2217@1,KOG2217@2759 |
| Ec32 ortholog description | SART-1 protein |
| Ec32 ortholog | Ec-20_004200.1 |
| EC | 3.4.17.21,3.6.4.13 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 945 |
| Cds size | 945 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930934.4604619-CDS-H-elongata_contig57514:698..809 | 1622930934.4604619-CDS-H-elongata_contig57514:698..809 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 699..809 + |
| 1691679630.9943736-CDS-H-elongata_contig57514:698..809 | 1691679630.9943736-CDS-H-elongata_contig57514:698..809 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 699..809 + |
| 1622930934.4770553-CDS-H-elongata_contig57514:1104..1320 | 1622930934.4770553-CDS-H-elongata_contig57514:1104..1320 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 1105..1320 + |
| 1691679631.007878-CDS-H-elongata_contig57514:1104..1320 | 1691679631.007878-CDS-H-elongata_contig57514:1104..1320 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 1105..1320 + |
| 1622930934.4940026-CDS-H-elongata_contig57514:1845..2103 | 1622930934.4940026-CDS-H-elongata_contig57514:1845..2103 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 1846..2103 + |
| 1691679631.019055-CDS-H-elongata_contig57514:1845..2103 | 1691679631.019055-CDS-H-elongata_contig57514:1845..2103 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 1846..2103 + |
| 1622930934.513972-CDS-H-elongata_contig57514:2843..3053 | 1622930934.513972-CDS-H-elongata_contig57514:2843..3053 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 2844..3053 + |
| 1691679631.0297139-CDS-H-elongata_contig57514:2843..3053 | 1691679631.0297139-CDS-H-elongata_contig57514:2843..3053 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 2844..3053 + |
| 1622930934.5274765-CDS-H-elongata_contig57514:3528..3678 | 1622930934.5274765-CDS-H-elongata_contig57514:3528..3678 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 3529..3678 + |
| 1691679631.0389137-CDS-H-elongata_contig57514:3528..3678 | 1691679631.0389137-CDS-H-elongata_contig57514:3528..3678 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig57514 3529..3678 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57514.13221.1 >prot_H-elongata_contig57514.13221.1 ID=prot_H-elongata_contig57514.13221.1|Name=mRNA_H-elongata_contig57514.13221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp
QRRSDLKKEAIRAKRGPYQAFDDEEFEGEIGPGAKRKVLSHYDEVKKDGP
RLTLGQGGTARDGGAAGPAGDEERAGKAVKVKESLKVEVKDASEYFTTEE
MVKMRKPKKMRKKRLRKREEAGASSSLGLEAAIQDSSNSSAIGGADHGSR
ATRAVKGEESSNGDSSKRFERAMEKASVRANEKLADSFAKPPTPIDQIAP
PLPPAPPTSTTPSPPVPADPMPFAEELDTDLGVSLARARRLAQMKEKARE
RKARDVGEASQQVLSQRRVKTELVEQGVAVKKELKEEEEGAEGAIVFTST
TEFTTRLEVRYKCW* back to topmRNA from alignment at H-elongata_contig57514:699..3678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig57514.13221.1 ID=mRNA_H-elongata_contig57514.13221.1|Name=mRNA_H-elongata_contig57514.13221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2980bp|location=Sequence derived from alignment at H-elongata_contig57514:699..3678+ (Himanthalia elongata Himel1 dioecious)
CAGCGCCGAAGCGACTTAAAGAAGGAGGCCATCCGCGCCAAGCGAGGACC
CTACCAGGCCTTCGACGACGAAGAGTTTGAGGGGGAGATAGGTCCCGGCG
CCAAGCGTAAGGTGGGCGACGAGGAAGTTCCAAAAATACGTGTTGACCGT
TTTGTTCTTTTAGCTGTCCACCGTTCGACGAATTCTTGGAAGATCCCTTG
GCCCGGGTGCGATCTGCGAATGTCATTTGACGCGGGGGTCGCGGATGTTG
GGGTCGGAGGGGCGGGGGTAAAAATGAATATATTGTTGCAGCGAGACGTC
GCAATCTCGACGGTTTTCCTAGAATTTTTGGAGGGGGAGTTAATGCGGTG
TGGGCGTCGTGTCCTTGAGTGAAAAAAAACTGTCGTATCTCTCTCGCTCT
CATCAGGTGCTGTCTCACTACGACGAGGTCAAGAAGGATGGTCCGCGGCT
TACTCTAGGTCAAGGGGGCACCGCGCGGGATGGCGGGGCGGCAGGACCCG
CGGGGGATGAAGAGCGGGCCGGGAAGGCGGTCAAGGTTAAGGAAAGCCTC
AAGGTTGAAGTGAAGGACGCCTCGGAGTACTTCACGACAGAGGAAATGGT
GAAGATGAGAAAGCCCAAGAAGGTGAGTGATGATGATAGGCGCAGGCGTG
CGCCCTTTTGTGTCTTCCGTTCGGTATATTTGCTCGTCTGGTTGATAAAA
TTAAAGTACCGGGCATATCTTTTTTGCTCCATCTCTTTTTCCCCGCTTTT
ATTTTTATGTGTTTCATTACTGTACTGCACTATGTTGCTTGTCTGGTGCA
TAATGCCGCACGACGCGGTGATATATGACATGACATCGACGCACAAAAAG
GTTACGGCCGTATATTTGCTGCTTTTATCCACAGAGTACATATTTACAAG
TGTACATCACCGTTTGCTTGTTACCTCTACATTTCGGTAATGGATATTTT
TCGATTGATGCGTTTTAGCATATACGGTCTCGATGATGCGTCAAGCGTGA
TAATGAGGGTCGTGTCGGGTCCGGTTGATCCGTTTTTAGTGCGCGCGTGA
CTTGCTGATCCATCTATCGTGTCGGTTCTTGCATGTGATCCTTGTGTCGG
CGCTGTTTGTGCTTTTGATGCTGTTAAATCGTGATGCCGCACTACAGATG
CGCAAGAAAAGACTGCGCAAGCGAGAAGAGGCAGGAGCGTCGTCTTCCCT
GGGGCTAGAGGCCGCCATCCAGGACTCCAGCAACTCCTCGGCAATCGGTG
GAGCGGATCATGGGTCTAGGGCGACGAGAGCCGTGAAAGGAGAGGAGAGC
AGCAACGGCGACAGCAGCAAGAGGTTCGAGAGGGCCATGGAGAAGGCAAG
CGTTCGAGCAAACGAGAAGCTTGCCGACAGCTTCGCCAAGCCACCGACCC
CGATTGTGAGACTCGAGTTTCAAGAGCGAAGGGCGTGTTAGGTGTTGTTA
TTTTTGTATGATGGAGGTGTGTGTGGTTGCGTCATTTTATATGGCATGCT
TGTTTTGGGACCGAGGTTCCGTTTTAACGCTTCTTTCGTCTCCATGGCTA
TTTGGTGCGCCTTCTCCCCACCGTCTGCAAGTCTGCTATGTCGGCAGCCG
TAGGGCTAGAGCTAGAGCCCAATCGCTGATGCTATTCATAGTCGGGGGGT
CAAAATATATATGGCGTTTGATCGACAAGACGGGGTGACAGAGCTTCCAC
CCACGACGCTGAAACAGCGCATCGCACACCACACCACAATCCCGTCATGG
CTTCCTCCGGTCGTCAGTCGTCAGTCGTCAGTCTTCAAGAGAGGATGGGA
TGGGATGGGATGTCAAGGCGTCACACAAGCGTTTTCATAGAGTTCCCGCG
TTTCTCTTGTCCTTCTATAACAGTCCGAGTGCCGAATATAATTTTCTCGG
TTGTTTGTATATAGATGCCCTTGGCTGTTGGCGGCACGACATATCTCATT
GGTCAAAGTGTCCGTTGGCCATTGCTAACTGACAATTGTATTTGAATACC
TTGTCAATCTCTCCACCGCTCTCTGCTGTGATTTGCTGCACGAGGGAGGA
TTTTTTTTTTTTTTTTTTTAATCTACCCTAGAATCGTAATGTTATGCGAA
CAATACCATGTATGCGTCTACTACTGTCCGATGCCTTGGCCACAGGACCA
AATTGCGCCACCACTGCCGCCAGCTCCTCCTACTTCTACTACCCCTTCCC
CCCCGGTGCCCGCGGATCCGATGCCCTTCGCCGAAGAGCTGGATACCGAC
CTCGGTGTGTCGCTAGCCAGGGCAAGGAGGCTAGCACAGATGAAAGAAAA
GGCCAGGGAAAGAAAGGCCAGGGACGTTGGAGAGGCAAGCCAGCAAGTCC
TTAGTGTTAGTGTTAGTGTTCTATGCTGCGCGTTGGGTTAGTGTTAAGTG
ATGGGATGTCGATGGATGTGGATACTGTTGCTTGTTGATTGCGCTTTTAG
TGTGTGTATTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATGAA
ATTGCACACATGACCGCGCAATCTGGCCCTGTCATGATGGTCATTCTAGG
CTACTCTATGTGTATGTGTATGTGTATGTGTATGTGTGTATAAGTAGCAT
GGTCCGATTGAACCTTTTGGTTTTGGTGCCAACCAAGTTATGAAACTTGT
GTCCTCAGCTATCCTGGGTGTTGATTTGCCGCGAATTCCTCTCTTAGTTT
CCCCATTCCCCCCTCTAATGCATGCCTGAATATCATTAGCTACTCTTTTT
TTACCGTGAATAGTGCCGGAACTTATAAATACTTGTACTTAATACTGACC
GCGCAGGTTGTGCGGGAAGCCATACAGAAGCAGAGGCGGGTGAAAACGGA
GCTCGTTGAACAAGGCGTTGCTGTCAAGAAGGAGTTGAAGGAAGAGGAGG
AGGGGGCCGAGGGAGCGATTGTCTTCACGTCGACCACAGAGTTCACCACG
CGACTGGAGGTGCGGTACAAGTGTTGGTGA back to topCoding sequence (CDS) from alignment at H-elongata_contig57514:699..3678+ >mRNA_H-elongata_contig57514.13221.1 ID=mRNA_H-elongata_contig57514.13221.1|Name=mRNA_H-elongata_contig57514.13221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig57514:699..3678+ (Himanthalia elongata Himel1 dioecious)
CAGCGCCGAAGCGACTTAAAGAAGGAGGCCATCCGCGCCAAGCGAGGACC
CTACCAGGCCTTCGACGACGAAGAGTTTGAGGGGGAGATAGGTCCCGGCG
CCAAGCGTAAGCAGCGCCGAAGCGACTTAAAGAAGGAGGCCATCCGCGCC
AAGCGAGGACCCTACCAGGCCTTCGACGACGAAGAGTTTGAGGGGGAGAT
AGGTCCCGGCGCCAAGCGTAAGGTGCTGTCTCACTACGACGAGGTCAAGA
AGGATGGTCCGCGGCTTACTCTAGGTCAAGGGGGCACCGCGCGGGATGGC
GGGGCGGCAGGACCCGCGGGGGATGAAGAGCGGGCCGGGAAGGCGGTCAA
GGTTAAGGAAAGCCTCAAGGTTGAAGTGAAGGACGCCTCGGAGTACTTCA
CGACAGAGGAAATGGTGAAGATGAGAAAGCCCAAGAAGGTGCTGTCTCAC
TACGACGAGGTCAAGAAGGATGGTCCGCGGCTTACTCTAGGTCAAGGGGG
CACCGCGCGGGATGGCGGGGCGGCAGGACCCGCGGGGGATGAAGAGCGGG
CCGGGAAGGCGGTCAAGGTTAAGGAAAGCCTCAAGGTTGAAGTGAAGGAC
GCCTCGGAGTACTTCACGACAGAGGAAATGGTGAAGATGAGAAAGCCCAA
GAAGATGCGCAAGAAAAGACTGCGCAAGCGAGAAGAGGCAGGAGCGTCGT
CTTCCCTGGGGCTAGAGGCCGCCATCCAGGACTCCAGCAACTCCTCGGCA
ATCGGTGGAGCGGATCATGGGTCTAGGGCGACGAGAGCCGTGAAAGGAGA
GGAGAGCAGCAACGGCGACAGCAGCAAGAGGTTCGAGAGGGCCATGGAGA
AGGCAAGCGTTCGAGCAAACGAGAAGCTTGCCGACAGCTTCGCCAAGCCA
CCGACCCCGATTATGCGCAAGAAAAGACTGCGCAAGCGAGAAGAGGCAGG
AGCGTCGTCTTCCCTGGGGCTAGAGGCCGCCATCCAGGACTCCAGCAACT
CCTCGGCAATCGGTGGAGCGGATCATGGGTCTAGGGCGACGAGAGCCGTG
AAAGGAGAGGAGAGCAGCAACGGCGACAGCAGCAAGAGGTTCGAGAGGGC
CATGGAGAAGGCAAGCGTTCGAGCAAACGAGAAGCTTGCCGACAGCTTCG
CCAAGCCACCGACCCCGATTGACCAAATTGCGCCACCACTGCCGCCAGCT
CCTCCTACTTCTACTACCCCTTCCCCCCCGGTGCCCGCGGATCCGATGCC
CTTCGCCGAAGAGCTGGATACCGACCTCGGTGTGTCGCTAGCCAGGGCAA
GGAGGCTAGCACAGATGAAAGAAAAGGCCAGGGAAAGAAAGGCCAGGGAC
GTTGGAGAGGCAAGCCAGCAAGTCCTTAGTGACCAAATTGCGCCACCACT
GCCGCCAGCTCCTCCTACTTCTACTACCCCTTCCCCCCCGGTGCCCGCGG
ATCCGATGCCCTTCGCCGAAGAGCTGGATACCGACCTCGGTGTGTCGCTA
GCCAGGGCAAGGAGGCTAGCACAGATGAAAGAAAAGGCCAGGGAAAGAAA
GGCCAGGGACGTTGGAGAGGCAAGCCAGCAAGTCCTTAGTCAGAGGCGGG
TGAAAACGGAGCTCGTTGAACAAGGCGTTGCTGTCAAGAAGGAGTTGAAG
GAAGAGGAGGAGGGGGCCGAGGGAGCGATTGTCTTCACGTCGACCACAGA
GTTCACCACGCGACTGGAGGTGCGGTACAAGTGTTGGTGACAGAGGCGGG
TGAAAACGGAGCTCGTTGAACAAGGCGTTGCTGTCAAGAAGGAGTTGAAG
GAAGAGGAGGAGGGGGCCGAGGGAGCGATTGTCTTCACGTCGACCACAGA
GTTCACCACGCGACTGGAGGTGCGGTACAAGTGTTGGTGA back to top
|