mRNA_H-elongata_contig57478.13216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57478.13216.1
Unique NamemRNA_H-elongata_contig57478.13216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57478.13216.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.440e-33
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:   28 AEGIDVAVVCLQECQSQELQRGLLGVLLELREEKPGL----LRRQLLRCVFLWEAAPILLSRKGYATDVRRDCLALSLWLLTEAHASGDEHLLIPANKTHSRQQRASIS 342
            A+G++ AVVCLQECQS +LQRG+LGVLL LR  K GL    LRR+LLR +FLWEAAPILLS+KGY+TDVRRDCLALSLWLL E HA+GDE  L  ++KT  R +R S+S
Sbjct:  369 ADGVNAAVVCLQECQSPDLQRGVLGVLLGLR--KDGLIKDFLRRKLLRSMFLWEAAPILLSKKGYSTDVRRDCLALSLWLLWETHAAGDERSLALSSKTR-RHRRPSVS 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57478.13216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE1.440e-3367.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57478contigH-elongata_contig57478:1597..2212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue8.3e-32
Seed eggNOG ortholog2880.D8LFY8
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.8851564-CDS-H-elongata_contig57478:1596..17541622930933.8851564-CDS-H-elongata_contig57478:1596..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57478 1597..1754 +
1691679630.7414882-CDS-H-elongata_contig57478:1596..17541691679630.7414882-CDS-H-elongata_contig57478:1596..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57478 1597..1754 +
1622930933.906106-CDS-H-elongata_contig57478:1967..22111622930933.906106-CDS-H-elongata_contig57478:1967..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57478 1968..2211 +
1691679630.7558632-CDS-H-elongata_contig57478:1967..22111691679630.7558632-CDS-H-elongata_contig57478:1967..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57478 1968..2211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57478.13216.1prot_H-elongata_contig57478.13216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57478 1597..2211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57478.13216.1

>prot_H-elongata_contig57478.13216.1 ID=prot_H-elongata_contig57478.13216.1|Name=mRNA_H-elongata_contig57478.13216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
FGGVSVIAAAEGIDVAVVCLQECQSQELQRGLLGVLLELREEKPGLLRRQ
LLRCVFLWEAAPILLSRKGYATDVRRDCLALSLWLLTEAHASGDEHLLIP
ANKTHSRQQRASISLATTTETLASPRDGSPARTG
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mRNA from alignment at H-elongata_contig57478:1597..2212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57478.13216.1 ID=mRNA_H-elongata_contig57478.13216.1|Name=mRNA_H-elongata_contig57478.13216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=616bp|location=Sequence derived from alignment at H-elongata_contig57478:1597..2212+ (Himanthalia elongata Himel1 dioecious)
TTTGGTGGGGTTTCGGTCATAGCTGCGGCCGAAGGTATCGATGTCGCGGT
GGTTTGCCTGCAGGAGTGCCAGAGCCAAGAGCTGCAGAGGGGCCTCCTCG
GAGTGCTTCTGGAACTCCGAGAGGAGAAGCCTGGTCTATTGCGACGTCAG
CTGCTTCGGTAAGCCTCCCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TTGCTTCTATCCTTATCCCTGTCGACTTATTGGGGTTTAATGCCTTCTAT
CCTTTTCTTGACCGGAGGCGTTGGTACTTAAATATTTCACGTGACGAGCC
CACGAAGAAACCCGCGCCCCTCCCCCCCTCCCTTTCCTTCCGTCTTTTTT
TCTTCGAAAATTGCTCCGCAGATGCGTTTTCCTGTGGGAAGCCGCGCCGA
TCCTCCTGTCGCGAAAGGGCTACGCGACGGACGTGCGCCGTGACTGCCTT
GCCCTCTCGCTCTGGCTTCTGACCGAGGCGCACGCGTCCGGAGACGAGCA
TTTGTTGATCCCGGCCAACAAAACGCATTCTCGCCAACAGCGTGCGTCGA
TTTCCCTGGCCACCACAACCGAGACCCTCGCCTCGCCGAGGGATGGGTCT
CCGGCACGTACTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig57478:1597..2212+

>mRNA_H-elongata_contig57478.13216.1 ID=mRNA_H-elongata_contig57478.13216.1|Name=mRNA_H-elongata_contig57478.13216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig57478:1597..2212+ (Himanthalia elongata Himel1 dioecious)
TTTGGTGGGGTTTCGGTCATAGCTGCGGCCGAAGGTATCGATGTCGCGGT
GGTTTGCCTGCAGGAGTGCCAGAGCCAAGAGCTGCAGAGGGGCCTCCTCG
GAGTGCTTCTGGAACTCCGAGAGGAGAAGCCTGGTCTATTGCGACGTCAG
CTGCTTCGTTTGGTGGGGTTTCGGTCATAGCTGCGGCCGAAGGTATCGAT
GTCGCGGTGGTTTGCCTGCAGGAGTGCCAGAGCCAAGAGCTGCAGAGGGG
CCTCCTCGGAGTGCTTCTGGAACTCCGAGAGGAGAAGCCTGGTCTATTGC
GACGTCAGCTGCTTCGATGCGTTTTCCTGTGGGAAGCCGCGCCGATCCTC
CTGTCGCGAAAGGGCTACGCGACGGACGTGCGCCGTGACTGCCTTGCCCT
CTCGCTCTGGCTTCTGACCGAGGCGCACGCGTCCGGAGACGAGCATTTGT
TGATCCCGGCCAACAAAACGCATTCTCGCCAACAGCGTGCGTCGATTTCC
CTGGCCACCACAACCGAGACCCTCGCCTCGCCGAGGGATGGGTCTCCGGC
ACGTACTGGTATGCGTTTTCCTGTGGGAAGCCGCGCCGATCCTCCTGTCG
CGAAAGGGCTACGCGACGGACGTGCGCCGTGACTGCCTTGCCCTCTCGCT
CTGGCTTCTGACCGAGGCGCACGCGTCCGGAGACGAGCATTTGTTGATCC
CGGCCAACAAAACGCATTCTCGCCAACAGCGTGCGTCGATTTCCCTGGCC
ACCACAACCGAGACCCTCGCCTCGCCGAGGGATGGGTCTCCGGCACGTAC
TGGT
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