mRNA_H-elongata_contig57467.13214.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: D7FY40_ECTSI (GTP cyclohydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY40_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.850e-52 Identity = 81/101 (80.20%), Postives = 92/101 (91.09%), Query Frame = 1
Query: 4 DDDETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKV 306
DDDE R+ KMQ+AC+TL++CLGEDVSREGLVKTP RMA+ALL+CTRGY + LS IVN A+FEEDHHEMILVKDIEIHSLCEHHMVPF+GK HI YIPRSK+
Sbjct: 66 DDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKI 166
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: A0A835YJ24_9STRA (GTP cyclohydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ24_9STRA) HSP 1 Score: 146 bits (368), Expect = 9.000e-42 Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 1
Query: 10 DETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKVRRL 315
+E R+A M A +TL+ C+GED +REGLV+TP RMA ALL CT+GY +RL ++NGAIFEE HHEMILVKDI+++S+CEHH+VPF G+AHI YIPRSKV L
Sbjct: 52 EEERLATMTAAVSTLLTCMGEDPTREGLVRTPYRMARALLDCTKGYEKRLDDVINGAIFEEHHHEMILVKDIDVYSMCEHHLVPFYGRAHIAYIPRSKVLGL 153
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: L8GDP8_ACACA (GTP cyclohydrolase 1 (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GDP8_ACACA) HSP 1 Score: 135 bits (341), Expect = 4.180e-39 Identity = 62/100 (62.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query: 4 DDDETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSK 303
DD+E ++ KM +A TLI+C+GED SREGLVKTP RMA+AL T+GY E L +IV GA+FEE+H +M++V+DI++ SLCEHHM+PF GK HIGYIP K
Sbjct: 28 DDEEAKMKKMTDAVRTLIECVGEDPSREGLVKTPLRMAKALQFFTKGYHENLETIVGGAVFEENHEDMVIVRDIDLFSLCEHHMIPFYGKVHIGYIPNKK 127
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: H3G797_PHYRM (GTP cyclohydrolase 1 n=2 Tax=Phytophthora TaxID=4783 RepID=H3G797_PHYRM) HSP 1 Score: 138 bits (347), Expect = 4.810e-39 Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1
Query: 1 PDD---DETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKVRRL 315
PDD D+ ++ KM A TL++C+GED REGLVKTP RMA+ALL T+GYG+ L ++N A+FEEDH EM++V+DI+++S+CEHHMVPF+GK HIGYIP KV L
Sbjct: 13 PDDHVQDQEKLKKMAAAVTTLLECIGEDPRREGLVKTPMRMAKALLYNTKGYGQSLRDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGL 120
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: D0NDK8_PHYIT (GTP cyclohydrolase 1 n=13 Tax=Phytophthora TaxID=4783 RepID=D0NDK8_PHYIT) HSP 1 Score: 139 bits (349), Expect = 7.740e-39 Identity = 62/103 (60.19%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 7 DDETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKVRRL 315
+D+ ++ KM A TL++C+GED REGLVKTP RMA+ALL T+GYG+ LS ++N A+FEEDH EM++V+DI+++S+CEHHMVPF+GK HIGYIP KV L
Sbjct: 58 EDKEKLEKMAAAVTTLLECIGEDPQREGLVKTPMRMAKALLYNTKGYGQSLSDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGL 160
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: A0A484DTW1_BRELC (GTP cyclohydrolase 1 n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTW1_BRELC) HSP 1 Score: 139 bits (349), Expect = 8.600e-39 Identity = 62/104 (59.62%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 4 DDDETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKVRRL 315
D D+ ++ KM A TL++C+GED +REGLVKTP RMA+ALL T+GYG+ L+ ++N A+FEEDH EM++V+DI+++S+CEHHMVPF+GK HIGYIP KV L
Sbjct: 61 DKDQEKLEKMAGAVITLLECIGEDPTREGLVKTPMRMAKALLYNTKGYGQTLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGL 164
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: A0A3M6VET4_9STRA (GTP cyclohydrolase 1 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VET4_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.120e-38 Identity = 60/104 (57.69%), Postives = 85/104 (81.73%), Query Frame = 1
Query: 4 DDDETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKVRRL 315
+DD+ +++KM A TL++C+GED REGL KTP RMA+A+L T+GYG++L+ ++N A+FEEDH EM++V+DI+++S+CEHHMVPF+GK HIGYIP KV L
Sbjct: 55 NDDKEKLSKMAAAVTTLLECIGEDPEREGLQKTPMRMAKAMLYNTKGYGQKLTDVLNEAVFEEDHEEMVIVRDIDLYSMCEHHMVPFAGKIHIGYIPNGKVLGL 158
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: L8GI36_ACACA (GTP cyclohydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GI36_ACACA) HSP 1 Score: 138 bits (347), Expect = 1.470e-38 Identity = 64/104 (61.54%), Postives = 82/104 (78.85%), Query Frame = 1
Query: 4 DDDETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKVRRL 315
DD+E ++ KM +A TLI+C+GED SREGLVKTP RMA+AL T+GY E L +IV GA+FEE+H +M++V+DI++ SLCEHHM+PF GK HIGYIP KV L
Sbjct: 51 DDEEAKMKKMTDAVRTLIECVGEDPSREGLVKTPLRMAKALQFFTKGYHENLETIVGGAVFEENHEDMVIVRDIDLFSLCEHHMIPFYGKVHIGYIPNKKVLGL 154
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: A0A7S1BAL5_9STRA (GTP cyclohydrolase 1 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BAL5_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.600e-38 Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 13 ETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKV 306
ET+I +M EAC T+++C+GED REGLVKTP R AEAL+ + GY ++L + N A+F EDH EM++V+DI+IHSLCEHHMVPF+GK H+GYIP K+
Sbjct: 48 ETKIQRMTEACRTILECIGEDPDREGLVKTPHRWAEALMFFSSGYEKKLEDVTNNAVFSEDHDEMVIVRDIDIHSLCEHHMVPFTGKVHVGYIPDGKI 145
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Match: A0A3R7FZY1_9STRA (GTP cyclohydrolase 1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FZY1_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.770e-38 Identity = 60/103 (58.25%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 7 DDETRIAKMQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAIFEEDHHEMILVKDIEIHSLCEHHMVPFSGKAHIGYIPRSKVRRL 315
+D+ ++ KM A TL++C+GED REGLVKTP RMA+A+L T+GYG+ L+ ++N A+FEEDH EM++V+DI+++S+CEHHMVPF+GK HIGYIP KV L
Sbjct: 67 EDKEKLEKMAAAVTTLLECIGEDTQREGLVKTPMRMAKAMLYNTKGYGQSLTDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGL 169 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57467.13214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57467.13214.1 >prot_H-elongata_contig57467.13214.1 ID=prot_H-elongata_contig57467.13214.1|Name=mRNA_H-elongata_contig57467.13214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp MQEACATLIQCLGEDVSREGLVKTPRRMAEALLSCTRGYGERLSSIVNGAback to top mRNA from alignment at H-elongata_contig57467:2223..2543- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57467.13214.1 ID=mRNA_H-elongata_contig57467.13214.1|Name=mRNA_H-elongata_contig57467.13214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig57467:2223..2543- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57467:2223..2543- >mRNA_H-elongata_contig57467.13214.1 ID=mRNA_H-elongata_contig57467.13214.1|Name=mRNA_H-elongata_contig57467.13214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig57467:2223..2543- (Himanthalia elongata Himel1 dioecious)back to top |