mRNA_H-elongata_contig57433.13211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57433.13211.1
Unique NamemRNA_H-elongata_contig57433.13211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57433.13211.1 vs. uniprot
Match: D8LKB8_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKB8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.250e-14
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   49 TGGGGDAA-SVKVFDRVAKRHQRDRAAASDLEGDYDYLREHIAQVLVDRIE 198
            +GGGGD   +VKVFDR AKR QRDRAAA+D EG++DYLREHIA+VLVDRIE
Sbjct:   28 SGGGGDGTPAVKVFDRTAKRRQRDRAAAADWEGEFDYLREHIARVLVDRIE 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57433.13211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKB8_ECTSI1.250e-1476.47Methyltransf_11 domain-containing protein n=2 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57433contigH-elongata_contig57433:2533..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue6e-13
Seed eggNOG ortholog2880.D8LKB8
KEGG koko:K18162
KEGG Pathwayko04714,map04714
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0007005,GO:0008150,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010257,GO:0010506,GO:0010507,GO:0016043,GO:0019222,GO:0022607,GO:0030154,GO:0030435,GO:0030587,GO:0031154,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0032502,GO:0032981,GO:0033108,GO:0034622,GO:0040011,GO:0042330,GO:0042331,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0043934,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0065003,GO:0065007,GO:0071840,GO:0090702,GO:0099120
EggNOG free text desc.peptidyl-arginine hydroxylation
EggNOG OGsCOG0500@1,KOG2940@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-01_009670.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Hectar predicted targeting categorymitochondrion
Exons1
Model size505
Cds size213
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.3757598-CDS-H-elongata_contig57433:2532..27451622930933.3757598-CDS-H-elongata_contig57433:2532..2745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57433 2533..2745 +
1691679630.5295515-CDS-H-elongata_contig57433:2532..27451691679630.5295515-CDS-H-elongata_contig57433:2532..2745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57433 2533..2745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.394579-UTR-H-elongata_contig57433:2745..30371622930933.394579-UTR-H-elongata_contig57433:2745..3037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57433 2746..3037 +
1691679630.541608-UTR-H-elongata_contig57433:2745..30371691679630.541608-UTR-H-elongata_contig57433:2745..3037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57433 2746..3037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57433.13211.1prot_H-elongata_contig57433.13211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57433 2533..2745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57433.13211.1

>prot_H-elongata_contig57433.13211.1 ID=prot_H-elongata_contig57433.13211.1|Name=mRNA_H-elongata_contig57433.13211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MLTRRQHVRLAWRLFSTGGGGDAASVKVFDRVAKRHQRDRAAASDLEGDY
DYLREHIAQVLVDRIEVGQE*
back to top

mRNA from alignment at H-elongata_contig57433:2533..3037+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57433.13211.1 ID=mRNA_H-elongata_contig57433.13211.1|Name=mRNA_H-elongata_contig57433.13211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at H-elongata_contig57433:2533..3037+ (Himanthalia elongata Himel1 dioecious)
ATGTTGACGCGTCGTCAGCACGTGAGGCTAGCATGGCGCTTGTTCTCCAC
GGGTGGAGGTGGCGATGCTGCGTCGGTCAAAGTGTTTGACAGGGTCGCAA
AACGACACCAACGCGATAGAGCTGCGGCTTCCGACCTCGAGGGGGACTAC
GACTATCTAAGGGAGCACATTGCACAGGTTTTAGTCGACCGTATCGAGGT
GGGACAGGAGTGATTGTACATTTTTGGTCAACCTCTGAGCTTCGCCTCCG
ATTCGCTATTTTGGTACAGCTGCTGCTGCAACAGCGGGGCGGACTTTGCG
TTGGGAGAGCTTAACCTCGGGTTGGTTCCTTTTTTGTCAAGATATACTGA
TCGCATTTGTACAATGTCGTCTGCCGGTATACCGCGCGCCGTTACGCGAT
TGTTCAACTGGTTAGTGATTTGATTGATGAGATAACACTCTCCATTAATC
ATACAGACGTCCTAAGTTGGAATCTCGGGGGCAATCATCTCCACTGTAAC
GGAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57433:2533..3037+

>mRNA_H-elongata_contig57433.13211.1 ID=mRNA_H-elongata_contig57433.13211.1|Name=mRNA_H-elongata_contig57433.13211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig57433:2533..3037+ (Himanthalia elongata Himel1 dioecious)
ATGTTGACGCGTCGTCAGCACGTGAGGCTAGCATGGCGCTTGTTCTCCAC
GGGTGGAGGTGGCGATGCTGCGTCGGTCAAAGTGTTTGACAGGGTCGCAA
AACGACACCAACGCGATAGAGCTGCGGCTTCCGACCTCGAGGGGGACTAC
GACTATCTAAGGGAGCACATTGCACAGGTTTTAGTCGACCGTATCGAGGT
GGGACAGGAGTGAATGTTGACGCGTCGTCAGCACGTGAGGCTAGCATGGC
GCTTGTTCTCCACGGGTGGAGGTGGCGATGCTGCGTCGGTCAAAGTGTTT
GACAGGGTCGCAAAACGACACCAACGCGATAGAGCTGCGGCTTCCGACCT
CGAGGGGGACTACGACTATCTAAGGGAGCACATTGCACAGGTTTTAGTCG
ACCGTATCGAGGTGGGACAGGAGTGA
back to top