mRNA_H-elongata_contig57432.13210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57432.13210.1
Unique NamemRNA_H-elongata_contig57432.13210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57432.13210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57432contigH-elongata_contig57432:2213..2898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57432.13210.1prot_H-elongata_contig57432.13210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57432 2348..2725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.2749212-UTR-H-elongata_contig57432:2212..23471622930933.2749212-UTR-H-elongata_contig57432:2212..2347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57432 2213..2347 +
1691679630.499518-UTR-H-elongata_contig57432:2212..23471691679630.499518-UTR-H-elongata_contig57432:2212..2347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57432 2213..2347 +
1622930933.3350904-UTR-H-elongata_contig57432:2725..28981622930933.3350904-UTR-H-elongata_contig57432:2725..2898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57432 2726..2898 +
1691679630.520655-UTR-H-elongata_contig57432:2725..28981691679630.520655-UTR-H-elongata_contig57432:2725..2898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57432 2726..2898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.3211935-CDS-H-elongata_contig57432:2347..27251622930933.3211935-CDS-H-elongata_contig57432:2347..2725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57432 2348..2725 +
1691679630.51301-CDS-H-elongata_contig57432:2347..27251691679630.51301-CDS-H-elongata_contig57432:2347..2725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57432 2348..2725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57432.13210.1

>prot_H-elongata_contig57432.13210.1 ID=prot_H-elongata_contig57432.13210.1|Name=mRNA_H-elongata_contig57432.13210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MSRHGLVIESMKNNRRRRVITRSITWIHVTCRSTIFSTIFSSRCVSQRYL
QKKKMQYSKQYSYKSILSCGSFRFLGLDAALVTFSAFLMSERASGRCGGL
CKTFAALKLLGSIDIVYSIYIVYTM*
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mRNA from alignment at H-elongata_contig57432:2213..2898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57432.13210.1 ID=mRNA_H-elongata_contig57432.13210.1|Name=mRNA_H-elongata_contig57432.13210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=686bp|location=Sequence derived from alignment at H-elongata_contig57432:2213..2898+ (Himanthalia elongata Himel1 dioecious)
AGAAGAAAGACACGCAGAAGAAAGAGAGCAGCCGGTAGCACGCCTTTGGT
GTACAGCGAGTGGGTGGCAGGTTAGACGTGAACGCCACCCTTGTTACCGT
ACATACAGTAACTTAGATAGAGGTGTGCACCGAACATGTCAAGGCATGGA
TTGGTCATTGAAAGCATGAAAAACAATAGGCGGCGACGAGTTATAACGCG
TAGTATCACGTGGATACACGTAACTTGCCGGAGTACAATATTCAGTACAA
TATTCAGTAGTAGATGTGTTTCACAACGGTACTTACAAAAAAAAAAAATG
CAGTACTCGAAACAGTATAGTTACAAGTCGATTTTGTCGTGCGGATCGTT
CCGATTCCTAGGCTTGGACGCGGCATTAGTAACCTTTTCAGCCTTTTTAA
TGAGCGAGCGAGCGAGTGGACGCTGTGGAGGTTTATGTAAAACGTTTGCT
GCTCTTAAATTACTTGGGAGTATTGATATCGTATATAGTATTTATATAGT
ATATACTATGTAGTTCGTAGAACAGTGCTGCCGTGGAGTGGAGAAGCCTC
GGTACCCTTTGATTCGGCCTTGTCTCGTTCTTACATGAGGTATGTTCTTT
CGAGGGACTATAACCGGTGTGAGGTAACACGAGAGAACCAAAAGCGAAAT
AATATGGAAACGAGAAGAGCTTTGGCATCGCCCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig57432:2213..2898+

>mRNA_H-elongata_contig57432.13210.1 ID=mRNA_H-elongata_contig57432.13210.1|Name=mRNA_H-elongata_contig57432.13210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig57432:2213..2898+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAGGCATGGATTGGTCATTGAAAGCATGAAAAACAATAGGCGGCG
ACGAGTTATAACGCGTAGTATCACGTGGATACACGTAACTTGCCGGAGTA
CAATATTCAGTACAATATTCAGTAGTAGATGTGTTTCACAACGGTACTTA
CAAAAAAAAAAAATGCAGTACTCGAAACAGTATAGTTACAAGTCGATTTT
GTCGTGCGGATCGTTCCGATTCCTAGGCTTGGACGCGGCATTAGTAACCT
TTTCAGCCTTTTTAATGAGCGAGCGAGCGAGTGGACGCTGTGGAGGTTTA
TGTAAAACGTTTGCTGCTCTTAAATTACTTGGGAGTATTGATATCGTATA
TAGTATTTATATAGTATATACTATGTAGATGTCAAGGCATGGATTGGTCA
TTGAAAGCATGAAAAACAATAGGCGGCGACGAGTTATAACGCGTAGTATC
ACGTGGATACACGTAACTTGCCGGAGTACAATATTCAGTACAATATTCAG
TAGTAGATGTGTTTCACAACGGTACTTACAAAAAAAAAAAATGCAGTACT
CGAAACAGTATAGTTACAAGTCGATTTTGTCGTGCGGATCGTTCCGATTC
CTAGGCTTGGACGCGGCATTAGTAACCTTTTCAGCCTTTTTAATGAGCGA
GCGAGCGAGTGGACGCTGTGGAGGTTTATGTAAAACGTTTGCTGCTCTTA
AATTACTTGGGAGTATTGATATCGTATATAGTATTTATATAGTATATACT
ATGTAG
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