mRNA_H-elongata_contig5743.13207.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: A0A6H5JZC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC7_9PHAE) HSP 1 Score: 138 bits (347), Expect = 4.650e-36 Identity = 74/164 (45.12%), Postives = 100/164 (60.98%), Query Frame = 1
Query: 1 QDGTDKDDDIFGGGIGDSGSVILVGSTYGDWFGTSNGGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGDEGT---VFLGGFTKGLWGISHAGGYDFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKGNWSDANLGGNDSVAVMLD 483
QDGT +D++ + GSV+L GST GDW GT+ G DFAAVKL+ + ++LWKWQ GT +D+ L+G + + V L G T+G W S+AGGYDF L+ +DG+ELW WQ+GT DD VA +G V LAG T+G+W+ N G D L+
Sbjct: 66 QDGTSDEDNLNDAVVNSDGSVVLAGSTEGDWGGTNAGLGDFAAVKLDESG-AVLWKWQSGTSDDELLVGITSANSASGSEVVLVGRTEGSWAASNAGGYDFCAAKLD-ADGNELWSWQDGTGADDTTKAVAVDGDGSVFLAGYTEGDWNQPNEGETDFAVTKLE 227
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: D7G7A3_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI) HSP 1 Score: 136 bits (342), Expect = 4.310e-34 Identity = 73/164 (44.51%), Postives = 98/164 (59.76%), Query Frame = 1
Query: 1 QDGTDKDDDIFGGGIGDSGSVILVGSTYGDWFGTSNGGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGDEGT---VFLGGFTKGLWGISHAGGYDFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKGNWSDANLGGNDSVAVMLD 483
QDGT +D++ + GSV+L GST GDW GT+ G D AAVKL+ + ++LWKWQ GT +D+ L+G + + V L G T+G W S+ GGYDF L+ +DG+ELW WQ+GT DD VA +G V LAG T+G+W+ N G D LD
Sbjct: 244 QDGTSDEDNLNDAVVNSDGSVVLAGSTEGDWSGTNAGLGDLAAVKLDESG-AVLWKWQSGTSDDELLVGITSANSASGSEVVLVGRTEGSWAASNVGGYDFCAAKLD-ADGNELWSWQDGTDADDTTKAVAVDGDGSVFLAGYTEGDWNQPNEGETDFAVTKLD 405
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: D7FXY5_ECTSI (von Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI) HSP 1 Score: 123 bits (308), Expect = 6.440e-30 Identity = 71/148 (47.97%), Postives = 87/148 (58.78%), Query Frame = 1
Query: 49 DSGSVILVGSTYGDWFGTSN-GGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAV-MGDEGTVFLGGFTKGLWGISHAG-GYDFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKGNWSDANLGGNDSVAVMLD 483
+S ++IL G T G W G ++ GG DF AV + + D S LW WQ GTEEDD LMG V G V L G T G W ++AG G DFA V L DGSE+WR+Q+G+S DD VA + VVLAG T+G+ N G D V LD
Sbjct: 105 ESTAIILAGFTKGGWDGAASAGGSDFVAVSVASGDGSQLWSWQDGTEEDDVLMGVVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTEGSLGGDNAGETDCAVVKLD 252
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: D8LAU1_ECTSI (PEGA domain family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU1_ECTSI) HSP 1 Score: 122 bits (306), Expect = 2.730e-29 Identity = 67/157 (42.68%), Postives = 87/157 (55.41%), Query Frame = 1
Query: 19 DDDIFGGGIGDSGSVILVGSTYGDWFGTSNGGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGDEG-TVFLGGFTKGLWGISHAGGYDFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGL-VVLAGVTKGNWSDANLGGNDSVAVMLD 483
D + F G+ SV+ G G W GT G DF AV L+ +LWKWQ G+E D + GA + DEG +V + G+T G + +AG DF + LN +DGSE+WRWQ+GT E D VA +G VL G T+G+W N G D VMLD
Sbjct: 71 DINAFAAAAGEGRSVVTAGFASGGWEGTGLGFVDFTAVSLDADSGELLWKWQDGSEGFDVIYGATLADEGESVVMAGYTSGNFSGVNAGSNDFVAIKLNFTDGSEVWRWQDGTDEWDQIGAVAETADGTGFVLVGSTQGDWDGDNAGNGDFAVVMLD 227
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.990e-29 Identity = 70/148 (47.30%), Postives = 86/148 (58.11%), Query Frame = 1
Query: 49 DSGSVILVGSTYGDWFGTSN-GGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAV-MGDEGTVFLGGFTKGLWGISHAG-GYDFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKGNWSDANLGGNDSVAVMLD 483
+S +++L G T G W G ++ GG DF AV L + D S LW WQ GTEEDD L+G V G V L G T G W ++AG G DFA V L DGSE+WR+Q+G+S DD VA + VVLAG T G+ N G D V LD
Sbjct: 52 ESTAIVLAGFTKGGWNGAASAGGSDFVAVSLASGDGSRLWSWQDGTEEDDVLVGLVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTDGSLGGVNAGETDCTVVKLD 199
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.330e-25 Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 52 SGSVILVGSTYGDWFGTSNGGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGDEGTVFLGGFTKGLWGISHAGGY---DFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKG 429
+GS +L G T GD+ GTS GG DF AVKL+ + + W+WQ GT EDD + V D+G+ L G T G W +A G DFA V+L+ SDG E+WRWQ+GT+EDD A +G VVL+G + G
Sbjct: 207 NGSFVLGGRTTGDFNGTSAGGTDFVAVKLDDSGTEV-WRWQDGTAEDDFVEAVVHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLS-SDGKEIWRWQDGTTEDDTLEGAAIQGDGSVVLSGNSGG 333
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.400e-25 Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 1
Query: 10 TDKDDDIFGGGIGDSGSVILVGSTYGDWFGTSNGGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGD-EGTVFLGGFTK-GLWGISHAGGYDFAGVLLNLSDGSELWRWQNGTSE-DDIALDVAGGYNGLVVLAGVTKGNWSDANLGGNDSVAVML 480
T +DD + + GSVI VG TYG W G +NG DFAA +L+ + I W++Q GTEE+D + A MGD + +V + G T G S++G D V LN + G+E+WR+Q+GTS D + L NG+VV AG T G WS N G +D AV L
Sbjct: 98 TPEDDIPYWMAMAGDGSVICVGQTYGSWDGDANGDSDFAAFRLDGNGEEI-WRYQDGTEEEDLMTAAAMGDGDSSVVMAGQTYVNFSGASNSGSADIVVVKLNATSGTEIWRYQDGTSVYDKLGLIAVAEDNGIVV-AGSTDGIWSGENAGLDDFAAVKL 255
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: D7G371_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G371_ECTSI) HSP 1 Score: 104 bits (260), Expect = 6.090e-24 Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 58 SVILVGSTYGDWFGTSNGGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGDEGTVFLGGFTKGLWGISHAGGY---DFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKG 429
S IL G T G++ GTS GG DF AVKL+ + + W+WQ GT +DD + D+G+ L G T G W +A G DFA V+L+ SDG E+WRWQ+GT+EDD A +G VVL+G + G
Sbjct: 83 SFILGGRTTGNFNGTSAGGTDFVAVKLDDSGTEV-WRWQDGTVQDDVVEAVAHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLS-SDGKEIWRWQDGTTEDDTLEGAAIQEDGSVVLSGNSGG 207
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.660e-23 Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 1
Query: 1 QDGTDKDDD-IFGGGIGDSGSVILVGSTYG--DWFGTSNGGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGDEGTVFLGGFTKG-LWGISHAGGYDFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKGNWSDANLGGNDSVAVMLD 483
Q G+ DDD ++G GS L G T G D + GGED A KL++ D +LW WQ GT +D + A D+G V +GG++ G L G+ G DF + + SDG+E WRWQ GT +D++ + +G VVL G+T+G+W + N G VAV LD
Sbjct: 12 QAGSSYDDDAVYGVSTDAEGSFFLAGKTTGSLDGITLNAGGEDMAVGKLDS-DGVLLWSWQEGTTGEDTMSDAAATDDGGVVVGGYSNGTLSGVVSEGLGDFIAIKFD-SDGTEEWRWQEGTEKDEVISTCSKTADGNVVLTGLTQGDWEETNTGLWALVAVKLD 174
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE) HSP 1 Score: 105 bits (261), Expect = 3.150e-23 Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 1
Query: 22 DDIFGGGIGDSGSVILVGSTYGDWFG-TSN-GGEDFAAVKLNTTDKSILWKWQGGTEEDDRLMGAVMGDEGTVFLGGFTKG-LWGISHAGGYDFAGVLLNLSDGSELWRWQNGTSEDDIALDVAGGYNGLVVLAGVTKGNWSDANLGGNDSVAVMLD 483
D ++G GS L G+T G G T N GG D AA KL++ D ++LW WQ G+ EDD L A D+G V GF G L G+ G DF + + SDG+E WRWQ+GT +D++ L + +G VVL G+T+G+W + N G VAV LD
Sbjct: 23 DYVYGVSADAEGSFFLAGTTEGSLDGITFNAGGTDMAAGKLDS-DGAVLWYWQEGSTEDDTLADAAATDDGGVVFAGFYNGTLNGVPSEGLGDFFAIKFD-SDGTEEWRWQDGTEKDEVILTCSKTADGNVVLTGMTQGDWVETNTGLWALVAVKLD 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5743.13207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5743.13207.1 >prot_H-elongata_contig5743.13207.1 ID=prot_H-elongata_contig5743.13207.1|Name=mRNA_H-elongata_contig5743.13207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp QDGTDKDDDIFGGGIGDSGSVILVGSTYGDWFGTSNGGEDFAAVKLNTTDback to top mRNA from alignment at H-elongata_contig5743:10116..11334- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5743.13207.1 ID=mRNA_H-elongata_contig5743.13207.1|Name=mRNA_H-elongata_contig5743.13207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1219bp|location=Sequence derived from alignment at H-elongata_contig5743:10116..11334- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5743:10116..11334- >mRNA_H-elongata_contig5743.13207.1 ID=mRNA_H-elongata_contig5743.13207.1|Name=mRNA_H-elongata_contig5743.13207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig5743:10116..11334- (Himanthalia elongata Himel1 dioecious)back to top |