mRNA_H-elongata_contig57408.13205.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57408.13205.1
Unique NamemRNA_H-elongata_contig57408.13205.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57408.13205.1 vs. uniprot
Match: A0A6H5JX29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX29_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.880e-14
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   55 NSMFSYFVILTAALALTILFYMMFTAFGMTAFQAAAPFIGTLALVFGVAHYLDRANESED-AKARGSRMGSASKDKTLSASGGVAPKGKGSAALPKRRRVAD 357
            +S  +Y V++T AL++T L ++M++A+G+ A +AAAPF+GT+ALVF VAH LDRA+E+ED AKA           K+    G  A     + A+PKRRR+AD
Sbjct:    3 SSAATYLVLVTVALSVTYLSFLMYSAYGLGAVKAAAPFVGTVALVFAVAHCLDRAHEAEDTAKAA---------PKSTQGGGTTAKPTATTPAIPKRRRIAD 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57408.13205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX29_9PHAE8.880e-1446.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57408contigH-elongata_contig57408:2339..3073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003430.1
Exons1
Model size735
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57408.13205.1prot_H-elongata_contig57408.13205.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57408 2390..2698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.7911851-UTR-H-elongata_contig57408:2338..23891622930932.7911851-UTR-H-elongata_contig57408:2338..2389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57408 2339..2389 +
1691679630.3299234-UTR-H-elongata_contig57408:2338..23891691679630.3299234-UTR-H-elongata_contig57408:2338..2389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57408 2339..2389 +
1622930932.8332372-UTR-H-elongata_contig57408:2698..30731622930932.8332372-UTR-H-elongata_contig57408:2698..3073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57408 2699..3073 +
1691679630.3578806-UTR-H-elongata_contig57408:2698..30731691679630.3578806-UTR-H-elongata_contig57408:2698..3073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57408 2699..3073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.811963-CDS-H-elongata_contig57408:2389..26981622930932.811963-CDS-H-elongata_contig57408:2389..2698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57408 2390..2698 +
1691679630.3421166-CDS-H-elongata_contig57408:2389..26981691679630.3421166-CDS-H-elongata_contig57408:2389..2698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57408 2390..2698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57408.13205.1

>prot_H-elongata_contig57408.13205.1 ID=prot_H-elongata_contig57408.13205.1|Name=mRNA_H-elongata_contig57408.13205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MNSMFSYFVILTAALALTILFYMMFTAFGMTAFQAAAPFIGTLALVFGVA
HYLDRANESEDAKARGSRMGSASKDKTLSASGGVAPKGKGSAALPKRRRV
AD*
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mRNA from alignment at H-elongata_contig57408:2339..3073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57408.13205.1 ID=mRNA_H-elongata_contig57408.13205.1|Name=mRNA_H-elongata_contig57408.13205.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at H-elongata_contig57408:2339..3073+ (Himanthalia elongata Himel1 dioecious)
CATCCAGAGGTTCTTCTAGAAAATCCACACGGACAACACGGCGGTTTAGA
CATGAACTCCATGTTCAGCTACTTCGTTATTCTCACGGCAGCCCTGGCTC
TGACTATCCTTTTCTACATGATGTTTACTGCTTTTGGTATGACCGCATTC
CAGGCAGCGGCACCCTTCATCGGAACTTTAGCCCTGGTTTTCGGAGTGGC
GCATTATTTGGACAGAGCGAACGAATCGGAGGACGCGAAAGCGCGGGGTT
CCAGGATGGGGTCGGCGTCGAAGGATAAAACATTATCTGCGAGTGGTGGG
GTTGCACCAAAGGGTAAAGGGTCGGCAGCGTTGCCCAAGCGTCGTCGAGT
GGCGGATTGACTTCGCGAAAGGGTGCGACAGCTTTGAAATATTGCTATTG
ATAGTCCAACAGTATAATAGTATTAATAGTAATCGTTTCTGGAAAATTGT
GTTCGGTGGTGTTCTGTAGCCGTAACCAACCGTAGTAATAGACCTATTAT
TAGTGAGAGATTCAGAGGATCCATGTATATGGTAACGAACACTGTACTTA
ACGTGTCAATTACCGGTTGTATCGACAGTACCATTGCCTGGATTTCTATA
CAAGGACAGAGTCACGCGGGAACTCGTATGGAAGGACTGAACTTATTCGT
CTGTAAGTATATAAGTGAAGCGGGGGGCAATAACGAAATGAAGAGAATAC
CGGTCGCGCCCACTTTTTCTTTTTTCTTTTTCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig57408:2339..3073+

>mRNA_H-elongata_contig57408.13205.1 ID=mRNA_H-elongata_contig57408.13205.1|Name=mRNA_H-elongata_contig57408.13205.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig57408:2339..3073+ (Himanthalia elongata Himel1 dioecious)
ATGAACTCCATGTTCAGCTACTTCGTTATTCTCACGGCAGCCCTGGCTCT
GACTATCCTTTTCTACATGATGTTTACTGCTTTTGGTATGACCGCATTCC
AGGCAGCGGCACCCTTCATCGGAACTTTAGCCCTGGTTTTCGGAGTGGCG
CATTATTTGGACAGAGCGAACGAATCGGAGGACGCGAAAGCGCGGGGTTC
CAGGATGGGGTCGGCGTCGAAGGATAAAACATTATCTGCGAGTGGTGGGG
TTGCACCAAAGGGTAAAGGGTCGGCAGCGTTGCCCAAGCGTCGTCGAGTG
GCGGATTGAATGAACTCCATGTTCAGCTACTTCGTTATTCTCACGGCAGC
CCTGGCTCTGACTATCCTTTTCTACATGATGTTTACTGCTTTTGGTATGA
CCGCATTCCAGGCAGCGGCACCCTTCATCGGAACTTTAGCCCTGGTTTTC
GGAGTGGCGCATTATTTGGACAGAGCGAACGAATCGGAGGACGCGAAAGC
GCGGGGTTCCAGGATGGGGTCGGCGTCGAAGGATAAAACATTATCTGCGA
GTGGTGGGGTTGCACCAAAGGGTAAAGGGTCGGCAGCGTTGCCCAAGCGT
CGTCGAGTGGCGGATTGA
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