mRNA_H-elongata_contig57407.13204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57407.13204.1
Unique NamemRNA_H-elongata_contig57407.13204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: D8LB20_ECTSI (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB20_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 5.550e-43
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 1
Query:    1 VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAK 285
            VKA+DV QG + DCWLVAAMATLAG MPG+I+KLF +S+RS RGKYKVRLFD+ +D+W TI VDD IPTR+G P+FAKPNGKELWVVLLEKA+AK
Sbjct:  113 VKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRGKYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 207          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: C1E5L8_MICCC (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E5L8_MICCC)

HSP 1 Score: 109 bits (272), Expect = 5.440e-26
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPTRNGK--PLFAKPNGKELWVVLLEKAIAK 285
            ++  D+ QG + DCWL+AA+ATLA   P +IRK F++ + S RGKY+VRL+D L+ QW  I++DD IP + G   P+F KPNG+ELW +LLEKA AK
Sbjct:  130 IEPADLRQGHLGDCWLLAALATLA-EHPVAIRKCFLNREYSSRGKYRVRLYDGLKRQWVIIVIDDYIPVKKGTKDPIFVKPNGEELWAMLLEKAFAK 225          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: D8TN36_VOLCA (Calpain catalytic domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TN36_VOLCA)

HSP 1 Score: 103 bits (258), Expect = 6.840e-26
Identity = 47/96 (48.96%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPT-RNGKPLFAKPNGKELWVVLLEKAIAK 285
            ++  D+ QG++ DCWL++A+A LA    G+++++F++ + +  GKYKVRL+D  ++ W TI VDD IP  ++G+P+FAKPNG E WV+LLEKA+AK
Sbjct:   68 IEPGDICQGQLGDCWLMSALACLAN-QEGAVQQVFLTKEYNAYGKYKVRLYDAPKEAWVTIAVDDWIPCGQDGRPIFAKPNGDEAWVLLLEKAMAK 162          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: A0A6U5W761_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5W761_GUITH)

HSP 1 Score: 107 bits (266), Expect = 2.010e-25
Identity = 45/92 (48.91%), Postives = 72/92 (78.26%), Query Frame = 1
Query:   10 KDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAK 285
            +D+ QG++ DCWL+AA+A L+    G+I + F + + S+RG YK++L+D  R++W  +I+DD +PT +G+P+FA+PNG+E+WV+LLEKA AK
Sbjct:   81 EDIAQGQLGDCWLLAALACLS-ERAGAIERCFETREISVRGLYKLKLYDGQREEWVRMIIDDYLPTEHGQPIFAQPNGREIWVLLLEKAFAK 171          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: F0YAK9_AURAN (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK9_AURAN)

HSP 1 Score: 99.8 bits (247), Expect = 2.300e-25
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   13 DVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPT--RNGKPLFAKPNGKELWVVLLEKAIAK 285
            DV QG + DCWL++A+A+ A A P  IR+LF++      G Y++RL+DV +++W  I++DD IP    N +P F KPNG ELWV+LLEKA AK
Sbjct:    1 DVKQGGLGDCWLLSAIASCAEAHPEIIRRLFITQFVEPCGVYRIRLYDVRKEKWVVIVIDDRIPMDDANARPRFTKPNGNELWVMLLEKAFAK 93          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: A0A8J4CF99_9CHLO (Calpain catalytic domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CF99_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 7.990e-25
Identity = 49/96 (51.04%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPT-RNGKPLFAKPNGKELWVVLLEKAIAK 285
            ++  D+ QG++ DCWL++A+A LA    G+++++FV+ + +  GKYKVRL+D  ++ W TI VDD IP   NG P+FAKPNG E WV+LLEKA+AK
Sbjct:  122 IEPSDICQGQLGDCWLMSALACLAN-QDGAVQQIFVTKEYNAYGKYKVRLYDAPKEAWVTIAVDDWIPCGSNGLPIFAKPNGDEAWVLLLEKAMAK 216          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: A0A836C565_9CHLO (Calpain catalytic domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C565_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 1.310e-24
Identity = 47/96 (48.96%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPT-RNGKPLFAKPNGKELWVVLLEKAIAK 285
            V+  D+ QG++ DCWL++A+A LA   PG+I+++F + + ++ G+YK+RL+D  R +W+T+ +DD +P   +G+P+FAKPNG E WVVLLEKA+AK
Sbjct:  130 VEPADICQGQLGDCWLMSALACLA-CQPGAIQQVFQTKEWTMYGRYKLRLYDGNRKKWSTVTIDDYLPCGADGQPIFAKPNGDEAWVVLLEKAVAK 224          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: A0A7S0N3J2_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N3J2_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 3.230e-24
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPTRNG--KPLFAKPNGKELWVVLLEKAIAK 285
            ++ +DV QG + DCWL+AA A LA   PG+I+K+FV+ + + R KY+VRL+D    +W T+ +DD IP   G  K  F+KPNG E+WV+LLEKA AK
Sbjct:  127 IEPQDVAQGAVGDCWLIAAFACLA-EFPGAIQKVFVTREWNTRRKYQVRLYDGFHQRWETVTIDDRIPVEKGTNKAAFSKPNGNEMWVILLEKAFAK 222          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: A0A8J4ALW4_9CHLO (Calpain catalytic domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ALW4_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 7.330e-24
Identity = 47/96 (48.96%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPTR-NGKPLFAKPNGKELWVVLLEKAIAK 285
            ++  D+ QG++ DCWL++A+A LA    G+++++FV+ + +  GKYKVRL+D  ++ W  + VDD IP   NG P+FAKPNG E WV+LLEKA+AK
Sbjct:  122 IEPSDICQGQLGDCWLMSALACLAN-QDGAVQQIFVTKEYNAYGKYKVRLYDAPKEAWVNVAVDDWIPCGDNGLPVFAKPNGDEAWVLLLEKAMAK 216          
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Match: L1IPC0_GUITC (Calpain catalytic domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPC0_GUITC)

HSP 1 Score: 103 bits (256), Expect = 7.790e-24
Identity = 44/88 (50.00%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   22 QGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRLFDVLRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAK 285
            QG++ DCWL+AA+A L+    G+I + F + + S+RG YK++L+D  R++W  +I+DD +PT +G+P+FA+PNG+E+WV+LLEKA AK
Sbjct:  174 QGQLGDCWLLAALACLS-ERAGAIERCFETREISVRGLYKLKLYDGQREEWVRMIIDDYLPTEHGQPIFAQPNGREIWVLLLEKAFAK 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57407.13204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB20_ECTSI5.550e-4375.79Calcium-dependent cytoplasmic cysteine proteinase,... [more]
C1E5L8_MICCC5.440e-2653.61Calcium-dependent cytoplasmic cysteine proteinase,... [more]
D8TN36_VOLCA6.840e-2648.96Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6U5W761_GUITH2.010e-2548.91Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
F0YAK9_AURAN2.300e-2550.54Calpain catalytic domain-containing protein (Fragm... [more]
A0A8J4CF99_9CHLO7.990e-2551.04Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A836C565_9CHLO1.310e-2448.96Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S0N3J2_9CHLO3.230e-2450.52Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A8J4ALW4_9CHLO7.330e-2448.96Calpain catalytic domain-containing protein n=1 Ta... [more]
L1IPC0_GUITC7.790e-2450.00Calpain catalytic domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57407contigH-elongata_contig57407:2743..3509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D8LB20
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.7261455-CDS-H-elongata_contig57407:2742..29021622930932.7261455-CDS-H-elongata_contig57407:2742..2902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57407 2743..2902 -
1691679630.3027413-CDS-H-elongata_contig57407:2742..29021691679630.3027413-CDS-H-elongata_contig57407:2742..2902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57407 2743..2902 -
1622930932.7432888-CDS-H-elongata_contig57407:3381..35091622930932.7432888-CDS-H-elongata_contig57407:3381..3509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57407 3382..3509 -
1691679630.3191562-CDS-H-elongata_contig57407:3381..35091691679630.3191562-CDS-H-elongata_contig57407:3381..3509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57407 3382..3509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57407.13204.1prot_H-elongata_contig57407.13204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57407 2743..3509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57407.13204.1

>prot_H-elongata_contig57407.13204.1 ID=prot_H-elongata_contig57407.13204.1|Name=mRNA_H-elongata_contig57407.13204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
VKAKDVTQGEICDCWLVAAMATLAGAMPGSIRKLFVSSQRSLRGKYKVRL
FDVLRDQWTTIIVDDIIPTRNGKPLFAKPNGKELWVVLLEKAIAK*
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mRNA from alignment at H-elongata_contig57407:2743..3509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57407.13204.1 ID=mRNA_H-elongata_contig57407.13204.1|Name=mRNA_H-elongata_contig57407.13204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=767bp|location=Sequence derived from alignment at H-elongata_contig57407:2743..3509- (Himanthalia elongata Himel1 dioecious)
GTCAAAGCCAAGGACGTGACGCAAGGAGAGATATGCGACTGTTGGCTGGT CGCGGCGATGGCCACCCTGGCGGGCGCCATGCCGGGCTCCATCAGGAAGC TATTCGTTAGTTCCCAGCGCTCCTTGAGGTGTGTTTGTTTATTTATTAAA TTGTGCATAACCGCGCAGTTCATTCCATGTCATTGCATATAACCCACCCG GTGTCTGTGTGTGTGTATGTTGAGTACGAAACGGCTTGAAGTAGATATCA TCTTAGCTACAACTTGGGTGTATGACTTCCTACGTCCATCCTCTCCTGGA TGAACCTCCATGTTCCGTCTCGGAGCCTATACGGCGCAAGGCGCTTAATT GTGCCCGATTGTGCAAGGTCGATCGGTCCAGAGTGGCAGATGACCTCTGG TCATATAAGCCCGACATCGGTTTTCGCTGGATTTTCCCTTTTGTGTTTTT TAGAGCATTTGGCGAAAACTGAGAGTGCAATGTGGCAGGTGACCCCAGAG CAACCTTCTACGTTTGGTCGGTACGACCGTTAGCAACGAGGCCGCGCTGC CTACACGTGTGCTCTCACTCTTCATTTCTTCTCTCGATGTATACTCGTAC CCAAAAGAGGGAAGTACAAAGTGCGGTTGTTTGACGTGTTGCGGGACCAA TGGACAACCATCATCGTGGACGACATCATCCCCACGCGCAACGGGAAGCC TCTGTTTGCTAAGCCCAACGGCAAGGAGTTGTGGGTCGTCCTGCTGGAGA AGGCCATTGCCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig57407:2743..3509-

>mRNA_H-elongata_contig57407.13204.1 ID=mRNA_H-elongata_contig57407.13204.1|Name=mRNA_H-elongata_contig57407.13204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig57407:2743..3509- (Himanthalia elongata Himel1 dioecious)
GTCAAAGCCAAGGACGTGACGCAAGGAGAGATATGCGACTGTTGGCTGGT
CGCGGCGATGGCCACCCTGGCGGGCGCCATGCCGGGCTCCATCAGGAAGC
TATTCGTTAGTTCCCAGCGCTCCTTGAGGTCAAAGCCAAGGACGTGACGC
AAGGAGAGATATGCGACTGTTGGCTGGTCGCGGCGATGGCCACCCTGGCG
GGCGCCATGCCGGGCTCCATCAGGAAGCTATTCGTTAGTTCCCAGCGCTC
CTTGAGAGGGAAGTACAAAGTGCGGTTGTTTGACGTGTTGCGGGACCAAT
GGACAACCATCATCGTGGACGACATCATCCCCACGCGCAACGGGAAGCCT
CTGTTTGCTAAGCCCAACGGCAAGGAGTTGTGGGTCGTCCTGCTGGAGAA
GGCCATTGCCAAGTGAAGGGAAGTACAAAGTGCGGTTGTTTGACGTGTTG
CGGGACCAATGGACAACCATCATCGTGGACGACATCATCCCCACGCGCAA
CGGGAAGCCTCTGTTTGCTAAGCCCAACGGCAAGGAGTTGTGGGTCGTCC
TGCTGGAGAAGGCCATTGCCAAGTGA
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