mRNA_H-elongata_contig57341.13201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57341.13201.1
Unique NamemRNA_H-elongata_contig57341.13201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: D7FQ20_ECTSI (Magnesium-protoporphyrin IX methyltransferase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ20_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 7.110e-40
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 PSFIKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDGSANSLFCDAGCG 228
            P  + ST++DKDKEEVTEYFNNNGFERWNKIYSESD+VNDVQRDIRTGHGQT+ KVL WVEEDGSA S+FCDAGCG
Sbjct:   57 PHVLMSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNDVQRDIRTGHGQTIDKVLRWVEEDGSAKSVFCDAGCG 132
[Close]
BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A836C7Y3_9STRA (Magnesium-protoporphyrin IX methyltransferase, putative chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.330e-31
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:   10 IKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDG-SANSLFCDAGCG 228
            + + V+DKDKEEVTEYFNNNGFERWNKIYS+SD+VN VQ+DIR GHGQTV KVL W++ DG +A   FCDAGCG
Sbjct:   41 MSTPVVDKDKEEVTEYFNNNGFERWNKIYSDSDEVNAVQKDIRDGHGQTVDKVLAWIDADGDAAKRTFCDAGCG 114
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BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A7R9U5L8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5L8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.620e-29
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   10 IKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDG-SANSLFCDAGCG 228
            +K++V DKDK EVTEYFNN GF+RWN+IYS S+DVN+VQ DIRTGH QT+ KVL WV+EDG +A   FCDAGCG
Sbjct:   40 LKASVEDKDKVEVTEYFNNEGFDRWNRIYSASEDVNNVQLDIRTGHDQTIAKVLKWVDEDGDAAGQTFCDAGCG 113
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BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A7R9U5K7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5K7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.910e-29
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   10 IKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDG-SANSLFCDAGCG 228
            +K++V DKDK EVTEYFNN GF+RWN+IYS S+DVN+VQ DIRTGH QT+ KVL WV+EDG +A   FCDAGCG
Sbjct:   40 LKASVEDKDKVEVTEYFNNEGFDRWNRIYSASEDVNNVQLDIRTGHDQTIAKVLKWVDEDGDAAGQTFCDAGCG 113
[Close]
BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A7S3UWH7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWH7_HETAK)

HSP 1 Score: 105 bits (263), Expect = 3.680e-26
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   10 IKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDGSANS-LFCDAGCG 228
            +K+ V   DKEEV EYFN NGFERWNKIYS+SD+VN VQ DIRTGH QT+ KVL W+ +DG A+   FCD GCG
Sbjct:   40 LKAVVGVDDKEEVREYFNTNGFERWNKIYSDSDEVNKVQLDIRTGHQQTIDKVLNWISQDGDASKRTFCDCGCG 113
[Close]
BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A7S3PU20_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU20_9STRA)

HSP 1 Score: 100 bits (250), Expect = 9.710e-26
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   34 DKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDGSANSL-FCDAGCG 228
            DK+EV EYFNN GF RWNKIYSESD+VN VQ DIR GHGQT+QK+L WVE+DG+      CD GCG
Sbjct:   41 DKKEVREYFNNEGFNRWNKIYSESDEVNSVQLDIRDGHGQTIQKILNWVEDDGNIKGKSVCDCGCG 106
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BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A5J4YIZ1_PORPP (Magnesium protoporphyrin IX methyltransferase, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIZ1_PORPP)

HSP 1 Score: 102 bits (255), Expect = 5.750e-25
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   10 IKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDGSAN-SLFCDAGCG 228
            +       DK+EV EYFNN GFERWNKIYSE  +VN+VQ+DIRTGH QT+Q++L W++ DG A    FCDAGCG
Sbjct:   41 VMQLTQKDDKKEVEEYFNNTGFERWNKIYSEDAEVNNVQKDIRTGHNQTIQRILAWIDADGDAQYKTFCDAGCG 114
[Close]
BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A7S0ZDP8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDP8_9RHOD)

HSP 1 Score: 100 bits (250), Expect = 6.540e-25
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    4 SFIKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDGSANSL-FCDAGCG 228
            S +    M  DK  V EYFNN GFERWNKIYSE   +N VQ+DIRTGH QTVQ +L W++ED +AN L FCDAGCG
Sbjct:   45 SSLSLLKMQDDKTIVEEYFNNTGFERWNKIYSEDKTINTVQQDIRTGHNQTVQVILNWIDEDKNANELTFCDAGCG 120
[Close]
BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: A0A7S1TQT4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQT4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.440e-24
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   28 DKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDG-SANSLFCDAGCG 228
            DKD  EV EYFN  GFERWNKIYSESD+VN+VQ DIRTGH QT+ KVL WV+ DG +A   FCDAGCG
Sbjct:   24 DKDLVEVEEYFNTAGFERWNKIYSESDEVNNVQLDIRTGHDQTIAKVLKWVDADGDAAKRTFCDAGCG 91
[Close]
BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Match: L1IBG6_GUITC (Mg-protoporphyrin O-methyltransferase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IBG6_GUITC)

HSP 1 Score: 101 bits (252), Expect = 1.510e-24
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   10 IKSTVMDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLTWVEEDGSA--NSLFCDAGCG 228
             +  V+D DK+EV EYFNN GF RW+KIYSESDDVN VQ+ IR+GH QT+ KVL W++EDGSA     FCDAGCG
Sbjct:   41 FRMAVVD-DKKEVKEYFNNEGFNRWSKIYSESDDVNAVQKFIRSGHQQTIDKVLAWIQEDGSAANGQTFCDAGCG 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57341.13201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ20_ECTSI7.110e-4084.21Magnesium-protoporphyrin IX methyltransferase, put... [more]
A0A836C7Y3_9STRA6.330e-3172.97Magnesium-protoporphyrin IX methyltransferase, put... [more]
A0A7R9U5L8_9STRA2.620e-2970.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9U5K7_9STRA7.910e-2970.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3UWH7_HETAK3.680e-2666.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PU20_9STRA9.710e-2669.70Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A5J4YIZ1_PORPP5.750e-2560.81Magnesium protoporphyrin IX methyltransferase, chl... [more]
A0A7S0ZDP8_9RHOD6.540e-2563.16Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S1TQT4_9STRA1.440e-2472.06Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L1IBG6_GUITC1.510e-2465.33Mg-protoporphyrin O-methyltransferase n=1 Tax=Guil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57341contigH-elongata_contig57341:2992..3653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.1e-29
Seed eggNOG ortholog2880.D7FQ20
Preferred nameCHLM
KEGG rclassRC00003,RC00460
KEGG koko:K03428
KEGG ReactionR04237
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046406,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.hexaprenyldihydroxybenzoate methyltransferase activity
EggNOG OGsCOG2227@1,KOG1270@2759
EC2.1.1.11
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57341.13201.1prot_H-elongata_contig57341.13201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57341 3016..3653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.428485-UTR-H-elongata_contig57341:2991..30151622930932.428485-UTR-H-elongata_contig57341:2991..3015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57341 2992..3015 +
1691679630.1525688-UTR-H-elongata_contig57341:2991..30151691679630.1525688-UTR-H-elongata_contig57341:2991..3015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57341 2992..3015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.4457543-CDS-H-elongata_contig57341:3015..31561622930932.4457543-CDS-H-elongata_contig57341:3015..3156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57341 3016..3156 +
1691679630.1819096-CDS-H-elongata_contig57341:3015..31561691679630.1819096-CDS-H-elongata_contig57341:3015..3156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57341 3016..3156 +
1622930932.4644434-CDS-H-elongata_contig57341:3578..36531622930932.4644434-CDS-H-elongata_contig57341:3578..3653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57341 3579..3653 +
1691679630.1957192-CDS-H-elongata_contig57341:3578..36531691679630.1957192-CDS-H-elongata_contig57341:3578..3653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57341 3579..3653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57341.13201.1

>prot_H-elongata_contig57341.13201.1 ID=prot_H-elongata_contig57341.13201.1|Name=mRNA_H-elongata_contig57341.13201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MDKDKEEVTEYFNNNGFERWNKIYSESDDVNDVQRDIRTGHGQTVQKVLT
WVEEDGSANSLFCDAGCGGER*
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mRNA from alignment at H-elongata_contig57341:2992..3653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57341.13201.1 ID=mRNA_H-elongata_contig57341.13201.1|Name=mRNA_H-elongata_contig57341.13201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=662bp|location=Sequence derived from alignment at H-elongata_contig57341:2992..3653+ (Himanthalia elongata Himel1 dioecious)
CCTTCGTTCATCAAAAGCACCGTGATGGACAAGGATAAAGAAGAGGTAAC
GGAGTACTTCAACAACAACGGGTTTGAACGTTGGAACAAGATCTACTCTG
AATCGGACGACGTCAACGACGTGCAGCGGGACATCCGGACGGGACACGGA
CAAACTGTACAAAAGGTAGAGAACAACACCCCCAATCAACTTGAGTGAAT
CCTCGCGTTTCACGTTCGTGCGCCAGATGTTTCGCTAGTGCGCTGCGGTC
TTCGGTATGTATCATGTCAAAGATGACCTCGAGGTTTGACATCGCCTGTA
TATGTTTTGTTCACATTTGCTGCAAGATCATCAAAGAAAATGGTGAATGA
AAGCAGTAGTTACCTCGCTGTTAAGGGGAAGCAATGGGCCCGTCAGAGCG
TTACCGCCGTAATCGTTCTAACATATGCCCCAAGGTGACGCTACCGCTGT
ATTACACACGCGTTGCGCCTGGAATGTTGTGGCACCATGCTGCCACGCCG
GCTGTTAGCACAAGCTAACCAACCGCTGTGCTTACAAGTACCCGTATACA
TATTTTGAACGCACATTACGCTTTGCTTCTCGTGCAGGTATTAACATGGG
TGGAGGAGGACGGGAGCGCGAACAGCTTGTTCTGTGATGCGGGATGTGGT
GGTGAGCGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig57341:2992..3653+

>mRNA_H-elongata_contig57341.13201.1 ID=mRNA_H-elongata_contig57341.13201.1|Name=mRNA_H-elongata_contig57341.13201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig57341:2992..3653+ (Himanthalia elongata Himel1 dioecious)
ATGGACAAGGATAAAGAAGAGGTAACGGAGTACTTCAACAACAACGGGTT
TGAACGTTGGAACAAGATCTACTCTGAATCGGACGACGTCAACGACGTGC
AGCGGGACATCCGGACGGGACACGGACAAACTGTACAAAAGATGGACAAG
GATAAAGAAGAGGTAACGGAGTACTTCAACAACAACGGGTTTGAACGTTG
GAACAAGATCTACTCTGAATCGGACGACGTCAACGACGTGCAGCGGGACA
TCCGGACGGGACACGGACAAACTGTACAAAAGGTATTAACATGGGTGGAG
GAGGACGGGAGCGCGAACAGCTTGTTCTGTGATGCGGGATGTGGTGGTGA
GCGCTAAGTATTAACATGGGTGGAGGAGGACGGGAGCGCGAACAGCTTGT
TCTGTGATGCGGGATGTGGTGGTGAGCGCTAA
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