mRNA_H-elongata_contig57292.13195.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A6H5KC18_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC18_9PHAE) HSP 1 Score: 121 bits (303), Expect = 4.210e-31 Identity = 57/80 (71.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GH +MSLP+T++AARE+D+VGVFRYR+AYP AIHL+ SGAI+VQPLITHRFSLA +F+ TI++GF+VSA GG+AIKV
Sbjct: 276 GMGHIMMSLPITASAAREVDLVGVFRYRDAYPTAIHLVGSGAIDVQPLITHRFSLATNFTSDTINEGFKVSARGGDAIKV 355
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A9NJU4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NJU4_PICSI) HSP 1 Score: 98.6 bits (244), Expect = 5.270e-25 Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GHN M++P+T AAARE+D+ GVFRYRN +P + +SSG ++V+PLITHRF FS + + FE SAGGGNAIKV
Sbjct: 18 GMGHNEMTVPLTPAAAREVDIFGVFRYRNTWPLCLEFLSSGKVDVKPLITHRFG----FSQKEVEEAFETSAGGGNAIKV 93
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A836CMG9_9STRA (Sorbitol dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG9_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.290e-24 Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 1 FGQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKVQS 249
G GH M+LP+T++AARE+D++GVFRYRNAYP AI LIS I+VQPLIT+RF+L FS I +GFEVSA G NAIK +
Sbjct: 274 IGMGHGEMTLPLTASAAREVDILGVFRYRNAYPLAIDLISKRHIDVQPLITNRFNLVGGFSQEVIKEGFEVSAKGRNAIKADA 356
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A7J9JMI8_9ROSI (ADH_zinc_N domain-containing protein (Fragment) n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9JMI8_9ROSI) HSP 1 Score: 99.8 bits (247), Expect = 4.850e-24 Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GHN M++P+T AAARE+DV+GVFRY+N +P I L+ SG I+V+PLITHRF FS I + FE SAGGGNAIKV
Sbjct: 144 GLGHNEMTVPLTPAAAREVDVIGVFRYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNAIKV 219
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A7J8MHQ3_9ROSI (ADH_zinc_N domain-containing protein n=5 Tax=Gossypium TaxID=3633 RepID=A0A7J8MHQ3_9ROSI) HSP 1 Score: 99.8 bits (247), Expect = 6.840e-24 Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GHN M++P+T AAARE+DV+GVFRY+N +P I L+ SG I+V+PLITHRF FS I + FE SAGGGNAIKV
Sbjct: 160 GLGHNEMTVPLTPAAAREVDVIGVFRYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNAIKV 235
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A5J5TFM0_GOSBA (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A5J5TFM0_GOSBA) HSP 1 Score: 99.8 bits (247), Expect = 1.810e-23 Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GHN M++P+T AAARE+DV+GVFRY+N +P I L+ SG I+V+PLITHRF FS I + FE SAGGGNAIKV
Sbjct: 211 GLGHNEMTVPLTPAAAREVDVIGVFRYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNAIKV 286
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A7J9EKX6_9ROSI (ADH_zinc_N domain-containing protein (Fragment) n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9EKX6_9ROSI) HSP 1 Score: 95.1 bits (235), Expect = 9.710e-23 Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GHN M++P+T AAARE+DV+GVF Y+N +P I L+ SG I+V+PLITHRF FS I + FE SAGGGN IKV
Sbjct: 95 GLGHNEMTVPLTPAAAREVDVIGVFWYKNTWPLCIELLRSGKIDVKPLITHRFG----FSQKEIEEAFETSAGGGNVIKV 170
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A5B6UQA3_9ROSI (Sorbitol dehydrogenase n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UQA3_9ROSI) HSP 1 Score: 96.7 bits (239), Expect = 1.060e-22 Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GH+ M+LP+T AAARE+DV+G+FRYRN +P I + SG I+V+PLITHRF FS + + FE SAGGG+AIKV
Sbjct: 160 GMGHHEMTLPLTPAAAREVDVIGIFRYRNTWPLCIEFLRSGKIDVKPLITHRFG----FSQKEVEEAFETSAGGGSAIKV 235
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A6A2YSQ4_HIBSY (GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YSQ4_HIBSY) HSP 1 Score: 97.8 bits (242), Expect = 1.250e-22 Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 4 GQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GHN M++P+T AAARE+DV+G+FRYRN +P I + SG I+V+PLITHRF FS + + FE SAGGGN IKV
Sbjct: 226 GMGHNEMTVPLTPAAAREVDVIGIFRYRNTWPLCIEFLRSGKIDVKPLITHRFG----FSQKEVEEAFETSAGGGNTIKV 301
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Match: A0A1S3AYN0_CUCME (sorbitol dehydrogenase-like n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3AYN0_CUCME) HSP 1 Score: 97.8 bits (242), Expect = 1.430e-22 Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 1 FGQGHNIMSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAEDFSPATISKGFEVSAGGGNAIKV 243
G GHN M++P+T AAARE+D++GVFRY+N +P + ISSG I+V+PLITHRF FS + + FE SA GGNAIKV
Sbjct: 234 IGMGHNEMTVPLTPAAAREVDIIGVFRYKNTWPVCLEFISSGKIDVKPLITHRFG----FSQKEVEEAFETSARGGNAIKV 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57292.13195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57292.13195.1 >prot_H-elongata_contig57292.13195.1 ID=prot_H-elongata_contig57292.13195.1|Name=mRNA_H-elongata_contig57292.13195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp MSLPVTSAAAREIDVVGVFRYRNAYPAAIHLISSGAINVQPLITHRFSLAback to top mRNA from alignment at H-elongata_contig57292:2822..3683- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57292.13195.1 ID=mRNA_H-elongata_contig57292.13195.1|Name=mRNA_H-elongata_contig57292.13195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=862bp|location=Sequence derived from alignment at H-elongata_contig57292:2822..3683- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57292:2822..3683- >mRNA_H-elongata_contig57292.13195.1 ID=mRNA_H-elongata_contig57292.13195.1|Name=mRNA_H-elongata_contig57292.13195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig57292:2822..3683- (Himanthalia elongata Himel1 dioecious)back to top |