mRNA_H-elongata_contig57255.13190.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57255.13190.1
Unique NamemRNA_H-elongata_contig57255.13190.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57255.13190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57255contigH-elongata_contig57255:1724..3644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size771
Cds size768
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57255.13190.1prot_H-elongata_contig57255.13190.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57255 1726..3644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.7526226-CDS-H-elongata_contig57255:1725..19021622930930.7526226-CDS-H-elongata_contig57255:1725..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 1726..1902 -
1691679629.4743824-CDS-H-elongata_contig57255:1725..19021691679629.4743824-CDS-H-elongata_contig57255:1725..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 1726..1902 -
1622930930.7725055-CDS-H-elongata_contig57255:2467..26051622930930.7725055-CDS-H-elongata_contig57255:2467..2605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 2468..2605 -
1691679629.485032-CDS-H-elongata_contig57255:2467..26051691679629.485032-CDS-H-elongata_contig57255:2467..2605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 2468..2605 -
1622930930.7882366-CDS-H-elongata_contig57255:3191..36441622930930.7882366-CDS-H-elongata_contig57255:3191..3644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 3192..3644 -
1691679629.4967654-CDS-H-elongata_contig57255:3191..36441691679629.4967654-CDS-H-elongata_contig57255:3191..3644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 3192..3644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57255.13190.1

>prot_H-elongata_contig57255.13190.1 ID=prot_H-elongata_contig57255.13190.1|Name=mRNA_H-elongata_contig57255.13190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
ELLRGFTFPPGQIAMRPLARRCRAQGSQYSSTIDEEVARNSPHPYEHGKQ
QTTRLAAASVRSLRRPRQGVDLAKAQRLRGSLECTGSSAGDFRGIERGDA
EAVVAAVEGRAWDSGGPLSTDGSGCSRPILPLTACSILLFSCLGDPAAAF
QWGAQPATAPAAPRTAVRDPRKQQSSCLQHSYGVLLQGSFTGRLRRQARR
APYVWGQGWPSVPVPHGTLEVTPTSGMGGGDRNTGGSNGGGMRVRGSGGA
RSSVEK
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mRNA from alignment at H-elongata_contig57255:1724..3644-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57255.13190.1 ID=mRNA_H-elongata_contig57255.13190.1|Name=mRNA_H-elongata_contig57255.13190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1921bp|location=Sequence derived from alignment at H-elongata_contig57255:1724..3644- (Himanthalia elongata Himel1 dioecious)
GAGCTTCTTCGAGGTTTCACCTTTCCACCCGGACAAATCGCCATGCGACC
TCTCGCGAGGCGCTGTCGAGCGCAGGGATCACAATACTCATCCACGATAG
ATGAAGAAGTGGCACGAAACAGTCCCCATCCCTATGAGCACGGAAAGCAG
CAGACCACGAGACTCGCTGCTGCATCCGTGCGGTCTCTCAGACGTCCCCG
ACAAGGTGTAGACCTCGCAAAGGCTCAGCGCCTTCGGGGTTCGTTAGAGT
GCACCGGAAGTTCGGCTGGAGACTTTCGTGGGATCGAGAGAGGAGATGCG
GAAGCTGTGGTAGCAGCGGTGGAGGGGAGGGCTTGGGATAGTGGAGGGCC
TCTGTCGACTGATGGGAGCGGTTGCTCGAGGCCGATACTCCCCTTGACGG
CGTGCTCGATTCTGTTGTTTTCGTGTCTTGGTGATCCGGCCGCTGCTTTC
CAGGTGCGTTCGGCTGAGGATACTCATATGCCTCAACTCTTGTTTGAGTT
GAACTCTTCGTCGCTCTGATCTTGTGCCATTTAACGCAGCCGTGCAGTTT
CTCTGGATAGCACGATCTCTCTCCAAATATACATGACTTTTCTTCTCCCC
TTCGACAAGCGATATTTGTGTACGTGTGTGAACCACCGCCACAACTTTTT
TGCAAACTGTACTAATATTCAATTAGTCTGTAGTACGAGTATCCAGTCCA
CCCTGACACATGTTTTTGATGATGGGTGTTTCAAAACGCGTTGGCGTCTT
GTCCTCGAGCTCCAACATGTGACCGTAACTCACCCCATAACATGTTCGCC
GCTTGGAGTAGACAGCCACACACGCAACCCACGCTAGCACACACTCGTTA
GCACACGTTCAGCTCCTCTGCCATTGCTCCTGAGGCCAAATAAAACAGCC
AGCCCCCCCCCACTAACCCCCTGTTATTAATTATTACCGAAATATACAAT
AATTAGCCACGTAGTGCAACTCCCAGTTATTGCATGCTTTCGCCTCTGAC
CGTTGGACCCCTGTCGCCCTCGTTTTCTGCTGTCCCCAGTGGGGAGCACA
GCCTGCAACTGCCCCCGCCGCCCCTCGAACCGCCGTGCGCGACCCTCGAA
AGCAGCAATCGTCCTGTCTCCAACACTCCTACGGCGTGCTGCTGCAGGGC
AGCTTCACAGGACGATTAAGACGTCAGGCGAGGAATGCATGTGTTGAAGA
TTGAGGAGGTTCATAAGAGAAGAAGGGACTGTGGAAACACAGGCATCAGT
ACAATACGACGTACTCGACGAGTATTAATAGTATTTTAACTTACAGTATT
TGTAGATATAATATATTTTTTATTTAATAAACGACTTTGTTTTATTCTTG
TAGACTATAAGATTCAGTCTCTTGTTATTGCGATGCGTACGATCGTGTTT
TCAAGCACAGTGAACTAACTACCCCCGCCCTAACCATGAAGGCACTCTTC
TGAGTCGGAAATAATTGTTGTTTTGACTCTAAATTCCTATTGGACCTAAT
CCCAACCCCTCTCGTGACTCCTTGCTGAACAGGGAAAATCTTATGGAACA
AACATAAAATCAGAGCGTAAACTTGAGAGAAAATGAAAACGATCGAGTCG
AGCAGCTAAAATCGTGGTGAAAGCGTGAAAGATGTTCTCGCGGCAGGCGA
TTCATTCAAATAGTGACAGTCGCAACGGCGTATGTAATTGCCACGGCACA
TTTCTGCAACCTCAACCGCTGTTCCGTGTGTACTAAGAACAGGCGAGGAG
AGCGCCCTACGTATGGGGGCAAGGATGGCCATCGGTGCCGGTCCCACACG
GCACGCTCGAGGTTACCCCGACGAGCGGGATGGGGGGGGGCGACCGGAAT
ACGGGGGGATCTAACGGTGGAGGCATGCGGGTACGGGGGTCCGGGGGTGC
GCGGAGTTCCGTGGAGAAACC
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Coding sequence (CDS) from alignment at H-elongata_contig57255:1724..3644-

>mRNA_H-elongata_contig57255.13190.1 ID=mRNA_H-elongata_contig57255.13190.1|Name=mRNA_H-elongata_contig57255.13190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig57255:1724..3644- (Himanthalia elongata Himel1 dioecious)
GAGCTTCTTCGAGGTTTCACCTTTCCACCCGGACAAATCGCCATGCGACC
TCTCGCGAGGCGCTGTCGAGCGCAGGGATCACAATACTCATCCACGATAG
ATGAAGAAGTGGCACGAAACAGTCCCCATCCCTATGAGCACGGAAAGCAG
CAGACCACGAGACTCGCTGCTGCATCCGTGCGGTCTCTCAGACGTCCCCG
ACAAGGTGTAGACCTCGCAAAGGCTCAGCGCCTTCGGGGTTCGTTAGAGT
GCACCGGAAGTTCGGCTGGAGACTTTCGTGGGATCGAGAGAGGAGATGCG
GAAGCTGTGGTAGCAGCGGTGGAGGGGAGGGCTTGGGATAGTGGAGGGCC
TCTGTCGACTGATGGGAGCGGTTGCTCGAGGCCGATACTCCCCTTGACGG
CGTGCTCGATTCTGTTGTTTTCGTGTCTTGGTGATCCGGCCGCTGCTTTC
CAGGAGCTTCTTCGAGGTTTCACCTTTCCACCCGGACAAATCGCCATGCG
ACCTCTCGCGAGGCGCTGTCGAGCGCAGGGATCACAATACTCATCCACGA
TAGATGAAGAAGTGGCACGAAACAGTCCCCATCCCTATGAGCACGGAAAG
CAGCAGACCACGAGACTCGCTGCTGCATCCGTGCGGTCTCTCAGACGTCC
CCGACAAGGTGTAGACCTCGCAAAGGCTCAGCGCCTTCGGGGTTCGTTAG
AGTGCACCGGAAGTTCGGCTGGAGACTTTCGTGGGATCGAGAGAGGAGAT
GCGGAAGCTGTGGTAGCAGCGGTGGAGGGGAGGGCTTGGGATAGTGGAGG
GCCTCTGTCGACTGATGGGAGCGGTTGCTCGAGGCCGATACTCCCCTTGA
CGGCGTGCTCGATTCTGTTGTTTTCGTGTCTTGGTGATCCGGCCGCTGCT
TTCCAGTGGGGAGCACAGCCTGCAACTGCCCCCGCCGCCCCTCGAACCGC
CGTGCGCGACCCTCGAAAGCAGCAATCGTCCTGTCTCCAACACTCCTACG
GCGTGCTGCTGCAGGGCAGCTTCACAGGACGATTAAGACGTCAGTGGGGA
GCACAGCCTGCAACTGCCCCCGCCGCCCCTCGAACCGCCGTGCGCGACCC
TCGAAAGCAGCAATCGTCCTGTCTCCAACACTCCTACGGCGTGCTGCTGC
AGGGCAGCTTCACAGGACGATTAAGACGTCAGGCGAGGAGAGCGCCCTAC
GTATGGGGGCAAGGATGGCCATCGGTGCCGGTCCCACACGGCACGCTCGA
GGTTACCCCGACGAGCGGGATGGGGGGGGGCGACCGGAATACGGGGGGAT
CTAACGGTGGAGGCATGCGGGTACGGGGGTCCGGGGGTGCGCGGAGTTCC
GTGGAGAAAGCGAGGAGAGCGCCCTACGTATGGGGGCAAGGATGGCCATC
GGTGCCGGTCCCACACGGCACGCTCGAGGTTACCCCGACGAGCGGGATGG
GGGGGGGCGACCGGAATACGGGGGGATCTAACGGTGGAGGCATGCGGGTA
CGGGGGTCCGGGGGTGCGCGGAGTTCCGTGGAGAAA
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